File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/a2373897e8d5a96084fdbbe9610e39/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-790e56-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/6a80b4509cfbc6bb22fb0f92ca6b5f/aih-tih-sc-790e56-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/39d1e14e1381b95da636c8b2ce3530/aih-tih-sc-790e56-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/a2373897e8d5a96084fdbbe9610e39/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/a2373897e8d5a96084fdbbe9610e39/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 160666838
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-790e56-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	160666838
Known Splicing Events:	157887633
Partial Novel Splicing Events:	1113994
Novel Splicing Events:	1610569
Filtered Splicing Events:	54642

Total splicing  Junctions:	499218
Known Splicing Junctions:	268594
Partial Novel Splicing Junctions:	143187
Novel Splicing Junctions:	87437

===================================================================
Create BED file ...
Create Interact file ...