File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/6d849d29674f31e6605a6194a68653/.command.log
Size
3.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-ffabe0-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/6d849d29674f31e6605a6194a68653/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/6d849d29674f31e6605a6194a68653/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/8d18621eec29b2dac163068f91fe85/aih-tih-sc-ffabe0-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/daab9517e92cacad17607fc0d544cb/aih-tih-sc-ffabe0-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
TENT4B--POMC
starfusion
RAP1GDS1--AC114786.2
starfusion
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba

  0%|          | 0/10 [00:00<?, ?it/s]
Processing TLK2--AC240565.1:   0%|          | 0/10 [00:00<?, ?it/s]
Processing TLK2--AC240565.1:  10%|█         | 1/10 [00:00<00:00,  9.26it/s]
Processing TLK2P1--AC110079.1:  10%|█         | 1/10 [00:00<00:00,  9.26it/s]
Processing TLK2P1--AC110079.1:  20%|██        | 2/10 [00:00<00:00,  9.49it/s]
Processing TENT4B--POMC:  20%|██        | 2/10 [00:00<00:00,  9.49it/s]      
Processing TENT4B--POMC:  30%|███       | 3/10 [00:00<00:00,  9.57it/s]
Processing RAP1GDS1--AC114786.2:  30%|███       | 3/10 [00:00<00:00,  9.57it/s]
Processing RAP1GDS1--AC114786.2:  40%|████      | 4/10 [00:00<00:00,  9.60it/s]
Processing STX16--NPEPL1:  40%|████      | 4/10 [00:00<00:00,  9.60it/s]       
Processing STX16--NPEPL1:  50%|█████     | 5/10 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  50%|█████     | 5/10 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  60%|██████    | 6/10 [00:00<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  60%|██████    | 6/10 [00:00<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  70%|███████   | 7/10 [00:00<00:00,  9.64it/s]
Processing PCDHA6--PCDHAC1:  70%|███████   | 7/10 [00:00<00:00,  9.64it/s]  
Processing PCDHA6--PCDHAC1:  80%|████████  | 8/10 [00:00<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  80%|████████  | 8/10 [00:00<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  90%|█████████ | 9/10 [00:00<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13:  90%|█████████ | 9/10 [00:00<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 10/10 [00:01<00:00,  9.66it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 10/10 [00:01<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory