File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/ef5d8f3432ecfab1e10373223bf9ed/.command.log
Size
2.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-c493d4-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/f3b48a58b87541786c8500c34a822e/aih-tih-sc-c493d4-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/ef5d8f3432ecfab1e10373223bf9ed/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/bef5636c4d1ee51f096c51c59500b9/aih-tih-sc-c493d4-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/ef5d8f3432ecfab1e10373223bf9ed/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
AC092807.3--DDAH1
arriba
TVP23C--CDRT4
arriba
NPHP3--ACAD11
arriba

  0%|          | 0/5 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   0%|          | 0/5 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:  20%|██        | 1/5 [00:00<00:00,  9.13it/s]
Processing TLK2--AC240565.1:  20%|██        | 1/5 [00:00<00:00,  9.13it/s]  
Processing TLK2--AC240565.1:  40%|████      | 2/5 [00:00<00:00,  9.39it/s]
Processing AC092807.3--DDAH1:  40%|████      | 2/5 [00:00<00:00,  9.39it/s]
Processing AC092807.3--DDAH1:  60%|██████    | 3/5 [00:00<00:00,  9.49it/s]
Processing TVP23C--CDRT4:  60%|██████    | 3/5 [00:00<00:00,  9.49it/s]    
Processing TVP23C--CDRT4:  80%|████████  | 4/5 [00:00<00:00,  9.54it/s]
Processing NPHP3--ACAD11:  80%|████████  | 4/5 [00:00<00:00,  9.54it/s]
Processing NPHP3--ACAD11: 100%|██████████| 5/5 [00:00<00:00,  9.56it/s]
Processing NPHP3--ACAD11: 100%|██████████| 5/5 [00:00<00:00,  9.50it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory