File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/bba3616c976e92be3dede81f23d8cf/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:46:14
                             Started mapping on |	Jun 08 08:54:42
                                    Finished on |	Jun 08 09:32:36
       Mapping speed, Million of reads per hour |	245.34

                          Number of input reads |	154970419
                      Average input read length |	257
                                    UNIQUE READS:
                   Uniquely mapped reads number |	147195251
                        Uniquely mapped reads % |	94.98%
                          Average mapped length |	256.31
                       Number of splices: Total |	163217022
            Number of splices: Annotated (sjdb) |	161000741
                       Number of splices: GT/AG |	161433697
                       Number of splices: GC/AG |	1124216
                       Number of splices: AT/AC |	121898
               Number of splices: Non-canonical |	537211
                      Mismatch rate per base, % |	0.18%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.98
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.61
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6214280
             % of reads mapped to multiple loci |	4.01%
        Number of reads mapped to too many loci |	235195
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1117904
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	207789
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%