Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/2d08c7e1b84dac80e2138be207b184/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/05194ae2fa5be7c7172f4a72a2e04f/fi_workdir/aih-tih-sc-f2fa3a-R1_A23YTGFLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/2d08c7e1b84dac80e2138be207b184/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 5018
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 5018
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:5018
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACOT11--GLIS1 HAVANA gene 30739 42111 . + . FI_gene_label "GLIS1^ENSG00000174332.5" ; ID "ACOT11--GLIS1^GLIS1^ENSG00000174332.5" ; ccdsid "CCDS582.1" ; exon_id "ENSE00001265898.3" ; exon_number 3 ; gene_id "ACOT11--GLIS1^GLIS1^ENSG00000174332.5" ; gene_name GLIS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008079.2" ; havana_transcript "OTTHUMT00000022109.1" ; hgnc_id "HGNC:29525" ; level 2 ; orig_coord_info "chr1,53594108,53594902,-" ; protein_id "ENSP00000309653.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "ACOT11--GLIS1^ENST00000312233.4" ; transcript_name "GLIS1-201" ; transcript_support_level 2 ; transcript_type protein_coding
ACOT11--GLIS1 HAVANA mRNA 30739 42111 . + . FI_gene_label "GLIS1^ENSG00000174332.5" ; ID "ACOT11--GLIS1^ENST00000312233.4" ; Parent "ACOT11--GLIS1^GLIS1^ENSG00000174332.5" ; ccdsid "CCDS582.1" ; exon_id "ENSE00001265898.3" ; exon_number 3 ; gene_id "ACOT11--GLIS1^GLIS1^ENSG00000174332.5" ; gene_name GLIS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008079.2" ; havana_transcript "OTTHUMT00000022109.1" ; hgnc_id "HGNC:29525" ; level 2 ; orig_coord_info "chr1,53594108,53594902,-" ; protein_id "ENSP00000309653.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "ACOT11--GLIS1^ENST00000312233.4" ; transcript_name "GLIS1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ACOT11--GLIS1 HAVANA gene 2190 19779 . + . FI_gene_label "ACOT11^ENSG00000162390.18" ; ID "ACOT11--GLIS1^ACOT11^ENSG00000162390.18" ; ccdsid "CCDS593.1" ; exon_id "ENSE00001424268.1" ; exon_number 1 ; gene_id "ACOT11--GLIS1^ACOT11^ENSG00000162390.18" ; gene_name ACOT11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009891.2" ; havana_transcript "OTTHUMT00000027351.1" ; hgnc_id "HGNC:18156" ; level 2 ; orig_coord_info "chr1,54548310,54548342,+" ; protein_id "ENSP00000340260.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACOT11--GLIS1^ENST00000343744.7" ; transcript_name "ACOT11-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACOT11--GLIS1 HAVANA mRNA 2190 19779 . + . FI_gene_label "ACOT11^ENSG00000162390.18" ; ID "ACOT11--GLIS1^ENST00000343744.7" ; Parent "ACOT11--GLIS1^ACOT11^ENSG00000162390.18" ; ccdsid "CCDS593.1" ; exon_id "ENSE00001424268.1" ; exon_number 1 ; gene_id "ACOT11--GLIS1^ACOT11^ENSG00000162390.18" ; gene_name ACOT11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009891.2" ; havana_transcript "OTTHUMT00000027351.1" ; hgnc_id "HGNC:18156" ; level 2 ; orig_coord_info "chr1,54548310,54548342,+" ; protein_id "ENSP00000340260.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACOT11--GLIS1^ENST00000343744.7" ; transcript_name "ACOT11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPC1--MYO3A HAVANA gene 3665 21440 . + . FI_gene_label "EPC1^ENSG00000120616.16" ; ID "EPC1--MYO3A^EPC1^ENSG00000120616.16" ; ccdsid "CCDS7172.1" ; exon_id "ENSE00001817472.1" ; exon_number 1 ; gene_id "EPC1--MYO3A^EPC1^ENSG00000120616.16" ; gene_name EPC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017925.4" ; havana_transcript "OTTHUMT00000047484.1" ; hgnc_id "HGNC:19876" ; level 2 ; orig_coord_info "chr10,32346763,32346915,-" ; protein_id "ENSP00000263062.8" ; tag basic CCDS ; transcript_id "EPC1--MYO3A^ENST00000263062.8" ; transcript_name "EPC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EPC1--MYO3A HAVANA mRNA 3665 21440 . + . FI_gene_label "EPC1^ENSG00000120616.16" ; ID "EPC1--MYO3A^ENST00000263062.8" ; Parent "EPC1--MYO3A^EPC1^ENSG00000120616.16" ; ccdsid "CCDS7172.1" ; exon_id "ENSE00001817472.1" ; exon_number 1 ; gene_id "EPC1--MYO3A^EPC1^ENSG00000120616.16" ; gene_name EPC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017925.4" ; havana_transcript "OTTHUMT00000047484.1" ; hgnc_id "HGNC:19876" ; level 2 ; orig_coord_info "chr10,32346763,32346915,-" ; protein_id "ENSP00000263062.8" ; tag basic CCDS ; transcript_id "EPC1--MYO3A^ENST00000263062.8" ; transcript_name "EPC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPC1--MYO3A HAVANA gene 25666 34971 . + . FI_gene_label "MYO3A^ENSG00000095777.17" ; ID "EPC1--MYO3A^MYO3A^ENSG00000095777.17" ; exon_id "ENSE00001177755.2" ; exon_number 3 ; gene_id "EPC1--MYO3A^MYO3A^ENSG00000095777.17" ; gene_name MYO3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017837.5" ; havana_transcript "OTTHUMT00000047261.1" ; hgnc_id "HGNC:7601" ; level 2 ; orig_coord_info "chr10,25952111,25952278,+" ; protein_id "ENSP00000365479.1" ; tag basic ; transcript_id "EPC1--MYO3A^ENST00000376302.5" ; transcript_name "MYO3A-202" ; transcript_support_level 1 ; transcript_type protein_coding
EPC1--MYO3A HAVANA mRNA 25666 34971 . + . FI_gene_label "MYO3A^ENSG00000095777.17" ; ID "EPC1--MYO3A^ENST00000376302.5" ; Parent "EPC1--MYO3A^MYO3A^ENSG00000095777.17" ; exon_id "ENSE00001177755.2" ; exon_number 3 ; gene_id "EPC1--MYO3A^MYO3A^ENSG00000095777.17" ; gene_name MYO3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017837.5" ; havana_transcript "OTTHUMT00000047261.1" ; hgnc_id "HGNC:7601" ; level 2 ; orig_coord_info "chr10,25952111,25952278,+" ; protein_id "ENSP00000365479.1" ; tag basic ; transcript_id "EPC1--MYO3A^ENST00000376302.5" ; transcript_name "MYO3A-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGGY--ZMYM4 HAVANA gene 1457 33775 . + . FI_gene_label "FGGY^ENSG00000172456.18" ; ID "FGGY--ZMYM4^FGGY^ENSG00000172456.18" ; ccdsid "CCDS611.2" ; exon_id "ENSE00003609460.1" ; exon_number 2 ; gene_id "FGGY--ZMYM4^FGGY^ENSG00000172456.18" ; gene_name FGGY ; gene_type protein_coding ; havana_gene "OTTHUMG00000008424.16" ; havana_transcript "OTTHUMT00000023210.2" ; hgnc_id "HGNC:25610" ; level 2 ; orig_coord_info "chr1,59321550,59321750,+" ; protein_id "ENSP00000305922.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FGGY--ZMYM4^ENST00000303721.12" ; transcript_name "FGGY-201" ; transcript_support_level 1 ; transcript_type protein_coding
FGGY--ZMYM4 HAVANA mRNA 1457 33775 . + . FI_gene_label "FGGY^ENSG00000172456.18" ; ID "FGGY--ZMYM4^ENST00000303721.12" ; Parent "FGGY--ZMYM4^FGGY^ENSG00000172456.18" ; ccdsid "CCDS611.2" ; exon_id "ENSE00003609460.1" ; exon_number 2 ; gene_id "FGGY--ZMYM4^FGGY^ENSG00000172456.18" ; gene_name FGGY ; gene_type protein_coding ; havana_gene "OTTHUMG00000008424.16" ; havana_transcript "OTTHUMT00000023210.2" ; hgnc_id "HGNC:25610" ; level 2 ; orig_coord_info "chr1,59321550,59321750,+" ; protein_id "ENSP00000305922.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FGGY--ZMYM4^ENST00000303721.12" ; transcript_name "FGGY-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGGY--ZMYM4 HAVANA gene 48010 78596 . + . FI_gene_label "ZMYM4^ENSG00000146463.12" ; ID "FGGY--ZMYM4^ZMYM4^ENSG00000146463.12" ; ccdsid "CCDS389.1" ; exon_id "ENSE00001670766.2" ; exon_number 1 ; gene_id "FGGY--ZMYM4^ZMYM4^ENSG00000146463.12" ; gene_name ZMYM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004241.6" ; havana_transcript "OTTHUMT00000012207.4" ; hgnc_id "HGNC:13055" ; level 2 ; orig_coord_info "chr1,35269047,35269085,+" ; protein_id "ENSP00000322915.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FGGY--ZMYM4^ENST00000314607.11" ; transcript_name "ZMYM4-201" ; transcript_support_level 2 ; transcript_type protein_coding
FGGY--ZMYM4 HAVANA mRNA 48010 78596 . + . FI_gene_label "ZMYM4^ENSG00000146463.12" ; ID "FGGY--ZMYM4^ENST00000314607.11" ; Parent "FGGY--ZMYM4^ZMYM4^ENSG00000146463.12" ; ccdsid "CCDS389.1" ; exon_id "ENSE00001670766.2" ; exon_number 1 ; gene_id "FGGY--ZMYM4^ZMYM4^ENSG00000146463.12" ; gene_name ZMYM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004241.6" ; havana_transcript "OTTHUMT00000012207.4" ; hgnc_id "HGNC:13055" ; level 2 ; orig_coord_info "chr1,35269047,35269085,+" ; protein_id "ENSP00000322915.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FGGY--ZMYM4^ENST00000314607.11" ; transcript_name "ZMYM4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
GMDS--GSE1 HAVANA gene 31837 52994 . + . FI_gene_label "GSE1^ENSG00000131149.19" ; ID "GMDS--GSE1^GSE1^ENSG00000131149.19" ; ccdsid "CCDS10952.1" ; exon_id "ENSE00001399788.3" ; exon_number 1 ; gene_id "GMDS--GSE1^GSE1^ENSG00000131149.19" ; gene_name GSE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137650.8" ; havana_transcript "OTTHUMT00000325527.3" ; hgnc_id "HGNC:28979" ; level 2 ; orig_coord_info "chr16,85613392,85613398,+" ; protein_id "ENSP00000253458.6" ; tag not_organism_supported basic MANE_Select appris_principal_4 CCDS ; transcript_id "GMDS--GSE1^ENST00000253458.12" ; transcript_name "GSE1-201" ; transcript_support_level 5 ; transcript_type protein_coding
GMDS--GSE1 HAVANA mRNA 31837 52994 . + . FI_gene_label "GSE1^ENSG00000131149.19" ; ID "GMDS--GSE1^ENST00000253458.12" ; Parent "GMDS--GSE1^GSE1^ENSG00000131149.19" ; ccdsid "CCDS10952.1" ; exon_id "ENSE00001399788.3" ; exon_number 1 ; gene_id "GMDS--GSE1^GSE1^ENSG00000131149.19" ; gene_name GSE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137650.8" ; havana_transcript "OTTHUMT00000325527.3" ; hgnc_id "HGNC:28979" ; level 2 ; orig_coord_info "chr16,85613392,85613398,+" ; protein_id "ENSP00000253458.6" ; tag not_organism_supported basic MANE_Select appris_principal_4 CCDS ; transcript_id "GMDS--GSE1^ENST00000253458.12" ; transcript_name "GSE1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GMDS--GSE1 HAVANA gene 1001 19334 . + . FI_gene_label "GMDS^ENSG00000112699.11" ; ID "GMDS--GSE1^GMDS^ENSG00000112699.11" ; ccdsid "CCDS4474.1" ; exon_id "ENSE00001486507.5" ; exon_number 1 ; gene_id "GMDS--GSE1^GMDS^ENSG00000112699.11" ; gene_name GMDS ; gene_type protein_coding ; havana_gene "OTTHUMG00000016143.6" ; havana_transcript "OTTHUMT00000043380.4" ; hgnc_id "HGNC:4369" ; level 1 ; orig_coord_info "chr6,2245321,2245422,-" ; protein_id "ENSP00000370194.4" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "GMDS--GSE1^ENST00000380815.5" ; transcript_name "GMDS-202" ; transcript_support_level 1 ; transcript_type protein_coding
GMDS--GSE1 HAVANA mRNA 1001 19334 . + . FI_gene_label "GMDS^ENSG00000112699.11" ; ID "GMDS--GSE1^ENST00000380815.5" ; Parent "GMDS--GSE1^GMDS^ENSG00000112699.11" ; ccdsid "CCDS4474.1" ; exon_id "ENSE00001486507.5" ; exon_number 1 ; gene_id "GMDS--GSE1^GMDS^ENSG00000112699.11" ; gene_name GMDS ; gene_type protein_coding ; havana_gene "OTTHUMG00000016143.6" ; havana_transcript "OTTHUMT00000043380.4" ; hgnc_id "HGNC:4369" ; level 1 ; orig_coord_info "chr6,2245321,2245422,-" ; protein_id "ENSP00000370194.4" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "GMDS--GSE1^ENST00000380815.5" ; transcript_name "GMDS-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAST2--AGBL4 ENSEMBL gene 44347 55242 . + . FI_gene_label "AGBL4^ENSG00000186094.17" ; ID "MAST2--AGBL4^AGBL4^ENSG00000186094.17" ; exon_id "ENSE00003651001.2" ; exon_number 1 ; gene_id "MAST2--AGBL4^AGBL4^ENSG00000186094.17" ; gene_name AGBL4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007793.6" ; hgnc_id "HGNC:25892" ; level 3 ; orig_coord_info "chr1,48663152,48663242,-" ; protein_id "ENSP00000335516.8" ; tag basic ; transcript_id "MAST2--AGBL4^ENST00000334103.11" ; transcript_name "AGBL4-201" ; transcript_support_level 5 ; transcript_type protein_coding
MAST2--AGBL4 ENSEMBL mRNA 44347 55242 . + . FI_gene_label "AGBL4^ENSG00000186094.17" ; ID "MAST2--AGBL4^ENST00000334103.11" ; Parent "MAST2--AGBL4^AGBL4^ENSG00000186094.17" ; exon_id "ENSE00003651001.2" ; exon_number 1 ; gene_id "MAST2--AGBL4^AGBL4^ENSG00000186094.17" ; gene_name AGBL4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007793.6" ; hgnc_id "HGNC:25892" ; level 3 ; orig_coord_info "chr1,48663152,48663242,-" ; protein_id "ENSP00000335516.8" ; tag basic ; transcript_id "MAST2--AGBL4^ENST00000334103.11" ; transcript_name "AGBL4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MAST2--AGBL4 HAVANA gene 2147 31461 . + . FI_gene_label "MAST2^ENSG00000086015.22" ; ID "MAST2--AGBL4^MAST2^ENSG00000086015.22" ; ccdsid "CCDS41326.1" ; exon_id "ENSE00002687770.2" ; exon_number 1 ; gene_id "MAST2--AGBL4^MAST2^ENSG00000086015.22" ; gene_name MAST2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008007.7" ; havana_transcript "OTTHUMT00000021977.2" ; hgnc_id "HGNC:19035" ; level 2 ; orig_coord_info "chr1,45803896,45804072,+" ; protein_id "ENSP00000354671.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MAST2--AGBL4^ENST00000361297.7" ; transcript_name "MAST2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAST2--AGBL4 HAVANA mRNA 2147 31461 . + . FI_gene_label "MAST2^ENSG00000086015.22" ; ID "MAST2--AGBL4^ENST00000361297.7" ; Parent "MAST2--AGBL4^MAST2^ENSG00000086015.22" ; ccdsid "CCDS41326.1" ; exon_id "ENSE00002687770.2" ; exon_number 1 ; gene_id "MAST2--AGBL4^MAST2^ENSG00000086015.22" ; gene_name MAST2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008007.7" ; havana_transcript "OTTHUMT00000021977.2" ; hgnc_id "HGNC:19035" ; level 2 ; orig_coord_info "chr1,45803896,45804072,+" ; protein_id "ENSP00000354671.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MAST2--AGBL4^ENST00000361297.7" ; transcript_name "MAST2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NFIA--DAB1 HAVANA gene 93999 101140 . + . FI_gene_label "DAB1^ENSG00000173406.16" ; ID "NFIA--DAB1^DAB1^ENSG00000173406.16" ; exon_id "ENSE00001454696.1" ; exon_number 1 ; gene_id "NFIA--DAB1^DAB1^ENSG00000173406.16" ; gene_name DAB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008391.7" ; havana_transcript "OTTHUMT00000027960.2" ; hgnc_id "HGNC:2661" ; level 2 ; orig_coord_info "chr1,57290964,57291030,-" ; protein_id "ENSP00000329120.6" ; tag mRNA_end_NF cds_end_NF ; transcript_id "NFIA--DAB1^ENST00000332102.10" ; transcript_name "DAB1-201" ; transcript_support_level 3 ; transcript_type protein_coding
NFIA--DAB1 HAVANA mRNA 93999 101140 . + . FI_gene_label "DAB1^ENSG00000173406.16" ; ID "NFIA--DAB1^ENST00000332102.10" ; Parent "NFIA--DAB1^DAB1^ENSG00000173406.16" ; exon_id "ENSE00001454696.1" ; exon_number 1 ; gene_id "NFIA--DAB1^DAB1^ENSG00000173406.16" ; gene_name DAB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008391.7" ; havana_transcript "OTTHUMT00000027960.2" ; hgnc_id "HGNC:2661" ; level 2 ; orig_coord_info "chr1,57290964,57291030,-" ; protein_id "ENSP00000329120.6" ; tag mRNA_end_NF cds_end_NF ; transcript_id "NFIA--DAB1^ENST00000332102.10" ; transcript_name "DAB1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
NFIA--DAB1 HAVANA gene 66175 74497 . + . FI_gene_label "NFIA^ENSG00000162599.17" ; ID "NFIA--DAB1^NFIA^ENSG00000162599.17" ; exon_id "ENSE00001847802.1" ; exon_number 1 ; gene_id "NFIA--DAB1^NFIA^ENSG00000162599.17" ; gene_name NFIA ; gene_type protein_coding ; havana_gene "OTTHUMG00000008618.11" ; havana_transcript "OTTHUMT00000023800.5" ; hgnc_id "HGNC:7784" ; level 2 ; orig_coord_info "chr1,61404085,61404282,+" ; protein_id "ENSP00000474462.1" ; tag CAGE_supported_TSS basic ; transcript_id "NFIA--DAB1^ENST00000357977.5" ; transcript_name "NFIA-201" ; transcript_support_level 2 ; transcript_type protein_coding
NFIA--DAB1 HAVANA mRNA 66175 74497 . + . FI_gene_label "NFIA^ENSG00000162599.17" ; ID "NFIA--DAB1^ENST00000357977.5" ; Parent "NFIA--DAB1^NFIA^ENSG00000162599.17" ; exon_id "ENSE00001847802.1" ; exon_number 1 ; gene_id "NFIA--DAB1^NFIA^ENSG00000162599.17" ; gene_name NFIA ; gene_type protein_coding ; havana_gene "OTTHUMG00000008618.11" ; havana_transcript "OTTHUMT00000023800.5" ; hgnc_id "HGNC:7784" ; level 2 ; orig_coord_info "chr1,61404085,61404282,+" ; protein_id "ENSP00000474462.1" ; tag CAGE_supported_TSS basic ; transcript_id "NFIA--DAB1^ENST00000357977.5" ; transcript_name "NFIA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NFIA--OMA1 HAVANA gene 66175 74497 . + . FI_gene_label "NFIA^ENSG00000162599.17" ; ID "NFIA--OMA1^NFIA^ENSG00000162599.17" ; exon_id "ENSE00001847802.1" ; exon_number 1 ; gene_id "NFIA--OMA1^NFIA^ENSG00000162599.17" ; gene_name NFIA ; gene_type protein_coding ; havana_gene "OTTHUMG00000008618.11" ; havana_transcript "OTTHUMT00000023800.5" ; hgnc_id "HGNC:7784" ; level 2 ; orig_coord_info "chr1,61404085,61404282,+" ; protein_id "ENSP00000474462.1" ; tag CAGE_supported_TSS basic ; transcript_id "NFIA--OMA1^ENST00000357977.5" ; transcript_name "NFIA-201" ; transcript_support_level 2 ; transcript_type protein_coding
NFIA--OMA1 HAVANA mRNA 66175 74497 . + . FI_gene_label "NFIA^ENSG00000162599.17" ; ID "NFIA--OMA1^ENST00000357977.5" ; Parent "NFIA--OMA1^NFIA^ENSG00000162599.17" ; exon_id "ENSE00001847802.1" ; exon_number 1 ; gene_id "NFIA--OMA1^NFIA^ENSG00000162599.17" ; gene_name NFIA ; gene_type protein_coding ; havana_gene "OTTHUMG00000008618.11" ; havana_transcript "OTTHUMT00000023800.5" ; hgnc_id "HGNC:7784" ; level 2 ; orig_coord_info "chr1,61404085,61404282,+" ; protein_id "ENSP00000474462.1" ; tag CAGE_supported_TSS basic ; transcript_id "NFIA--OMA1^ENST00000357977.5" ; transcript_name "NFIA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NFIA--OMA1 HAVANA gene 82325 93375 . + . FI_gene_label "OMA1^ENSG00000162600.12" ; ID "NFIA--OMA1^OMA1^ENSG00000162600.12" ; ccdsid "CCDS608.1" ; exon_id "ENSE00003541330.1" ; exon_number 2 ; gene_id "NFIA--OMA1^OMA1^ENSG00000162600.12" ; gene_name OMA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010068.7" ; havana_transcript "OTTHUMT00000027819.2" ; hgnc_id "HGNC:29661" ; level 2 ; orig_coord_info "chr1,58538795,58539294,-" ; protein_id "ENSP00000360270.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NFIA--OMA1^ENST00000371226.8" ; transcript_name "OMA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NFIA--OMA1 HAVANA mRNA 82325 93375 . + . FI_gene_label "OMA1^ENSG00000162600.12" ; ID "NFIA--OMA1^ENST00000371226.8" ; Parent "NFIA--OMA1^OMA1^ENSG00000162600.12" ; ccdsid "CCDS608.1" ; exon_id "ENSE00003541330.1" ; exon_number 2 ; gene_id "NFIA--OMA1^OMA1^ENSG00000162600.12" ; gene_name OMA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010068.7" ; havana_transcript "OTTHUMT00000027819.2" ; hgnc_id "HGNC:29661" ; level 2 ; orig_coord_info "chr1,58538795,58539294,-" ; protein_id "ENSP00000360270.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NFIA--OMA1^ENST00000371226.8" ; transcript_name "OMA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHA13 HAVANA gene 8595 17035 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHA13 HAVANA mRNA 8595 17035 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA3--PCDHA13^ENST00000289272.3" ; Parent "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHA13 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHA13^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHA13 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHA13^ENST00000532566.3" ; Parent "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHA13^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC1 HAVANA gene 8595 18610 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHAC1 HAVANA mRNA 8595 18610 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA3--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC1 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC1^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHAC1 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC1^ENST00000532566.3" ; Parent "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC1^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC2 HAVANA gene 8601 19336 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHAC2 HAVANA mRNA 8601 19336 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA3--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC2 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC2^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHAC2 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC2^ENST00000532566.3" ; Parent "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC2^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
SSBP3--PATJ HAVANA gene 61398 75964 . + . FI_gene_label "PATJ^ENSG00000132849.21" ; ID "SSBP3--PATJ^PATJ^ENSG00000132849.21" ; exon_id "ENSE00001716531.2" ; exon_number 1 ; gene_id "SSBP3--PATJ^PATJ^ENSG00000132849.21" ; gene_name PATJ ; gene_type protein_coding ; havana_gene "OTTHUMG00000008560.10" ; havana_transcript "OTTHUMT00000488269.2" ; hgnc_id "HGNC:28881" ; level 2 ; orig_coord_info "chr1,61952390,61952411,+" ; protein_id "ENSP00000307496.8" ; tag basic ; transcript_id "SSBP3--PATJ^ENST00000307297.8" ; transcript_name "PATJ-201" ; transcript_support_level 2 ; transcript_type protein_coding
SSBP3--PATJ HAVANA mRNA 61398 75964 . + . FI_gene_label "PATJ^ENSG00000132849.21" ; ID "SSBP3--PATJ^ENST00000307297.8" ; Parent "SSBP3--PATJ^PATJ^ENSG00000132849.21" ; exon_id "ENSE00001716531.2" ; exon_number 1 ; gene_id "SSBP3--PATJ^PATJ^ENSG00000132849.21" ; gene_name PATJ ; gene_type protein_coding ; havana_gene "OTTHUMG00000008560.10" ; havana_transcript "OTTHUMT00000488269.2" ; hgnc_id "HGNC:28881" ; level 2 ; orig_coord_info "chr1,61952390,61952411,+" ; protein_id "ENSP00000307496.8" ; tag basic ; transcript_id "SSBP3--PATJ^ENST00000307297.8" ; transcript_name "PATJ-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SSBP3--PATJ HAVANA gene 2969 25764 . + . FI_gene_label "SSBP3^ENSG00000157216.16" ; ID "SSBP3--PATJ^SSBP3^ENSG00000157216.16" ; ccdsid "CCDS590.1" ; exon_id "ENSE00001894230.1" ; exon_number 1 ; gene_id "SSBP3--PATJ^SSBP3^ENSG00000157216.16" ; gene_name SSBP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008264.5" ; havana_transcript "OTTHUMT00000022720.2" ; hgnc_id "HGNC:15674" ; level 2 ; orig_coord_info "chr1,54405953,54406008,-" ; protein_id "ENSP00000350067.4" ; tag basic CCDS ; transcript_id "SSBP3--PATJ^ENST00000357475.9" ; transcript_name "SSBP3-202" ; transcript_support_level 1 ; transcript_type protein_coding
SSBP3--PATJ HAVANA mRNA 2969 25764 . + . FI_gene_label "SSBP3^ENSG00000157216.16" ; ID "SSBP3--PATJ^ENST00000357475.9" ; Parent "SSBP3--PATJ^SSBP3^ENSG00000157216.16" ; ccdsid "CCDS590.1" ; exon_id "ENSE00001894230.1" ; exon_number 1 ; gene_id "SSBP3--PATJ^SSBP3^ENSG00000157216.16" ; gene_name SSBP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008264.5" ; havana_transcript "OTTHUMT00000022720.2" ; hgnc_id "HGNC:15674" ; level 2 ; orig_coord_info "chr1,54405953,54406008,-" ; protein_id "ENSP00000350067.4" ; tag basic CCDS ; transcript_id "SSBP3--PATJ^ENST00000357475.9" ; transcript_name "SSBP3-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STIL--LRRC42 HAVANA gene 27924 37098 . + . FI_gene_label "LRRC42^ENSG00000116212.15" ; ID "STIL--LRRC42^LRRC42^ENSG00000116212.15" ; ccdsid "CCDS585.1" ; exon_id "ENSE00000772731.1" ; exon_number 2 ; gene_id "STIL--LRRC42^LRRC42^ENSG00000116212.15" ; gene_name LRRC42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008436.3" ; havana_transcript "OTTHUMT00000023249.1" ; hgnc_id "HGNC:28792" ; level 2 ; orig_coord_info "chr1,53952000,53952472,+" ; protein_id "ENSP00000318185.4" ; tag basic appris_principal_1 CCDS ; transcript_id "STIL--LRRC42^ENST00000319223.8" ; transcript_name "LRRC42-201" ; transcript_support_level 1 ; transcript_type protein_coding
STIL--LRRC42 HAVANA mRNA 27924 37098 . + . FI_gene_label "LRRC42^ENSG00000116212.15" ; ID "STIL--LRRC42^ENST00000319223.8" ; Parent "STIL--LRRC42^LRRC42^ENSG00000116212.15" ; ccdsid "CCDS585.1" ; exon_id "ENSE00000772731.1" ; exon_number 2 ; gene_id "STIL--LRRC42^LRRC42^ENSG00000116212.15" ; gene_name LRRC42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008436.3" ; havana_transcript "OTTHUMT00000023249.1" ; hgnc_id "HGNC:28792" ; level 2 ; orig_coord_info "chr1,53952000,53952472,+" ; protein_id "ENSP00000318185.4" ; tag basic appris_principal_1 CCDS ; transcript_id "STIL--LRRC42^ENST00000319223.8" ; transcript_name "LRRC42-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STIL--LRRC42 ENSEMBL gene 1001 24655 . + . FI_gene_label "STIL^ENSG00000123473.16" ; ID "STIL--LRRC42^STIL^ENSG00000123473.16" ; ccdsid "CCDS72786.1" ; exon_id "ENSE00001064464.3" ; exon_number 3 ; gene_id "STIL--LRRC42^STIL^ENSG00000123473.16" ; gene_name STIL ; gene_type protein_coding ; havana_gene "OTTHUMG00000007851.4" ; hgnc_id "HGNC:10879" ; level 3 ; orig_coord_info "chr1,47310276,47310319,-" ; protein_id "ENSP00000337367.6" ; tag basic CCDS ; transcript_id "STIL--LRRC42^ENST00000337817.9" ; transcript_name "STIL-201" ; transcript_support_level 5 ; transcript_type protein_coding
STIL--LRRC42 ENSEMBL mRNA 1001 24655 . + . FI_gene_label "STIL^ENSG00000123473.16" ; ID "STIL--LRRC42^ENST00000337817.9" ; Parent "STIL--LRRC42^STIL^ENSG00000123473.16" ; ccdsid "CCDS72786.1" ; exon_id "ENSE00001064464.3" ; exon_number 3 ; gene_id "STIL--LRRC42^STIL^ENSG00000123473.16" ; gene_name STIL ; gene_type protein_coding ; havana_gene "OTTHUMG00000007851.4" ; hgnc_id "HGNC:10879" ; level 3 ; orig_coord_info "chr1,47310276,47310319,-" ; protein_id "ENSP00000337367.6" ; tag basic CCDS ; transcript_id "STIL--LRRC42^ENST00000337817.9" ; transcript_name "STIL-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TACSTD2--AL353681.1 HAVANA gene 1001 2820 . + . FI_gene_label "TACSTD2^ENSG00000184292.7" ; ID "TACSTD2--AL353681.1^TACSTD2^ENSG00000184292.7" ; ccdsid "CCDS609.1" ; exon_id "ENSE00001454677.4" ; exon_number 1 ; gene_id "TACSTD2--AL353681.1^TACSTD2^ENSG00000184292.7" ; gene_name TACSTD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010067.2" ; havana_transcript "OTTHUMT00000027818.2" ; hgnc_id "HGNC:11530" ; level 2 ; orig_coord_info "chr1,58576188,58577156,-" ; protein_id "ENSP00000360269.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TACSTD2--AL353681.1^ENST00000371225.4" ; transcript_name "TACSTD2-201" ; transcript_support_level NA ; transcript_type protein_coding
TACSTD2--AL353681.1 HAVANA mRNA 1001 2820 . + . FI_gene_label "TACSTD2^ENSG00000184292.7" ; ID "TACSTD2--AL353681.1^ENST00000371225.4" ; Parent "TACSTD2--AL353681.1^TACSTD2^ENSG00000184292.7" ; ccdsid "CCDS609.1" ; exon_id "ENSE00001454677.4" ; exon_number 1 ; gene_id "TACSTD2--AL353681.1^TACSTD2^ENSG00000184292.7" ; gene_name TACSTD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010067.2" ; havana_transcript "OTTHUMT00000027818.2" ; hgnc_id "HGNC:11530" ; level 2 ; orig_coord_info "chr1,58576188,58577156,-" ; protein_id "ENSP00000360269.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TACSTD2--AL353681.1^ENST00000371225.4" ; transcript_name "TACSTD2-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
TACSTD2--AL603840.1 HAVANA gene 1001 2820 . + . FI_gene_label "TACSTD2^ENSG00000184292.7" ; ID "TACSTD2--AL603840.1^TACSTD2^ENSG00000184292.7" ; ccdsid "CCDS609.1" ; exon_id "ENSE00001454677.4" ; exon_number 1 ; gene_id "TACSTD2--AL603840.1^TACSTD2^ENSG00000184292.7" ; gene_name TACSTD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010067.2" ; havana_transcript "OTTHUMT00000027818.2" ; hgnc_id "HGNC:11530" ; level 2 ; orig_coord_info "chr1,58576188,58577156,-" ; protein_id "ENSP00000360269.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TACSTD2--AL603840.1^ENST00000371225.4" ; transcript_name "TACSTD2-201" ; transcript_support_level NA ; transcript_type protein_coding
TACSTD2--AL603840.1 HAVANA mRNA 1001 2820 . + . FI_gene_label "TACSTD2^ENSG00000184292.7" ; ID "TACSTD2--AL603840.1^ENST00000371225.4" ; Parent "TACSTD2--AL603840.1^TACSTD2^ENSG00000184292.7" ; ccdsid "CCDS609.1" ; exon_id "ENSE00001454677.4" ; exon_number 1 ; gene_id "TACSTD2--AL603840.1^TACSTD2^ENSG00000184292.7" ; gene_name TACSTD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010067.2" ; havana_transcript "OTTHUMT00000027818.2" ; hgnc_id "HGNC:11530" ; level 2 ; orig_coord_info "chr1,58576188,58577156,-" ; protein_id "ENSP00000360269.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TACSTD2--AL603840.1^ENST00000371225.4" ; transcript_name "TACSTD2-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
TACSTD2--FGGY HAVANA gene 6277 38595 . + . FI_gene_label "FGGY^ENSG00000172456.18" ; ID "TACSTD2--FGGY^FGGY^ENSG00000172456.18" ; ccdsid "CCDS611.2" ; exon_id "ENSE00003609460.1" ; exon_number 2 ; gene_id "TACSTD2--FGGY^FGGY^ENSG00000172456.18" ; gene_name FGGY ; gene_type protein_coding ; havana_gene "OTTHUMG00000008424.16" ; havana_transcript "OTTHUMT00000023210.2" ; hgnc_id "HGNC:25610" ; level 2 ; orig_coord_info "chr1,59321550,59321750,+" ; protein_id "ENSP00000305922.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TACSTD2--FGGY^ENST00000303721.12" ; transcript_name "FGGY-201" ; transcript_support_level 1 ; transcript_type protein_coding
TACSTD2--FGGY HAVANA mRNA 6277 38595 . + . FI_gene_label "FGGY^ENSG00000172456.18" ; ID "TACSTD2--FGGY^ENST00000303721.12" ; Parent "TACSTD2--FGGY^FGGY^ENSG00000172456.18" ; ccdsid "CCDS611.2" ; exon_id "ENSE00003609460.1" ; exon_number 2 ; gene_id "TACSTD2--FGGY^FGGY^ENSG00000172456.18" ; gene_name FGGY ; gene_type protein_coding ; havana_gene "OTTHUMG00000008424.16" ; havana_transcript "OTTHUMT00000023210.2" ; hgnc_id "HGNC:25610" ; level 2 ; orig_coord_info "chr1,59321550,59321750,+" ; protein_id "ENSP00000305922.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TACSTD2--FGGY^ENST00000303721.12" ; transcript_name "FGGY-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TACSTD2--FGGY HAVANA gene 1001 2820 . + . FI_gene_label "TACSTD2^ENSG00000184292.7" ; ID "TACSTD2--FGGY^TACSTD2^ENSG00000184292.7" ; ccdsid "CCDS609.1" ; exon_id "ENSE00001454677.4" ; exon_number 1 ; gene_id "TACSTD2--FGGY^TACSTD2^ENSG00000184292.7" ; gene_name TACSTD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010067.2" ; havana_transcript "OTTHUMT00000027818.2" ; hgnc_id "HGNC:11530" ; level 2 ; orig_coord_info "chr1,58576188,58577156,-" ; protein_id "ENSP00000360269.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TACSTD2--FGGY^ENST00000371225.4" ; transcript_name "TACSTD2-201" ; transcript_support_level NA ; transcript_type protein_coding
TACSTD2--FGGY HAVANA mRNA 1001 2820 . + . FI_gene_label "TACSTD2^ENSG00000184292.7" ; ID "TACSTD2--FGGY^ENST00000371225.4" ; Parent "TACSTD2--FGGY^TACSTD2^ENSG00000184292.7" ; ccdsid "CCDS609.1" ; exon_id "ENSE00001454677.4" ; exon_number 1 ; gene_id "TACSTD2--FGGY^TACSTD2^ENSG00000184292.7" ; gene_name TACSTD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010067.2" ; havana_transcript "OTTHUMT00000027818.2" ; hgnc_id "HGNC:11530" ; level 2 ; orig_coord_info "chr1,58576188,58577156,-" ; protein_id "ENSP00000360269.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TACSTD2--FGGY^ENST00000371225.4" ; transcript_name "TACSTD2-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
TCEANC2--ROR1 HAVANA gene 1025 15075 . + . FI_gene_label "TCEANC2^ENSG00000116205.14" ; ID "TCEANC2--ROR1^TCEANC2^ENSG00000116205.14" ; ccdsid "CCDS587.1" ; exon_id "ENSE00003503445.1" ; exon_number 2 ; gene_id "TCEANC2--ROR1^TCEANC2^ENSG00000116205.14" ; gene_name TCEANC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008434.6" ; havana_transcript "OTTHUMT00000023245.3" ; hgnc_id "HGNC:26494" ; level 2 ; orig_coord_info "chr1,54054423,54054524,+" ; protein_id "ENSP00000234827.1" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "TCEANC2--ROR1^ENST00000234827.6" ; transcript_name "TCEANC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TCEANC2--ROR1 HAVANA mRNA 1025 15075 . + . FI_gene_label "TCEANC2^ENSG00000116205.14" ; ID "TCEANC2--ROR1^ENST00000234827.6" ; Parent "TCEANC2--ROR1^TCEANC2^ENSG00000116205.14" ; ccdsid "CCDS587.1" ; exon_id "ENSE00003503445.1" ; exon_number 2 ; gene_id "TCEANC2--ROR1^TCEANC2^ENSG00000116205.14" ; gene_name TCEANC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008434.6" ; havana_transcript "OTTHUMT00000023245.3" ; hgnc_id "HGNC:26494" ; level 2 ; orig_coord_info "chr1,54054423,54054524,+" ; protein_id "ENSP00000234827.1" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "TCEANC2--ROR1^ENST00000234827.6" ; transcript_name "TCEANC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TCEANC2--ROR1 HAVANA gene 20544 35751 . + . FI_gene_label "ROR1^ENSG00000185483.12" ; ID "TCEANC2--ROR1^ROR1^ENSG00000185483.12" ; ccdsid "CCDS626.1" ; exon_id "ENSE00001454305.2" ; exon_number 1 ; gene_id "TCEANC2--ROR1^ROR1^ENSG00000185483.12" ; gene_name ROR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009022.2" ; havana_transcript "OTTHUMT00000025002.2" ; hgnc_id "HGNC:10256" ; level 2 ; orig_coord_info "chr1,63774418,63774508,+" ; protein_id "ENSP00000360120.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TCEANC2--ROR1^ENST00000371079.6" ; transcript_name "ROR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TCEANC2--ROR1 HAVANA mRNA 20544 35751 . + . FI_gene_label "ROR1^ENSG00000185483.12" ; ID "TCEANC2--ROR1^ENST00000371079.6" ; Parent "TCEANC2--ROR1^ROR1^ENSG00000185483.12" ; ccdsid "CCDS626.1" ; exon_id "ENSE00001454305.2" ; exon_number 1 ; gene_id "TCEANC2--ROR1^ROR1^ENSG00000185483.12" ; gene_name ROR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009022.2" ; havana_transcript "OTTHUMT00000025002.2" ; hgnc_id "HGNC:10256" ; level 2 ; orig_coord_info "chr1,63774418,63774508,+" ; protein_id "ENSP00000360120.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TCEANC2--ROR1^ENST00000371079.6" ; transcript_name "ROR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF362--STIL ENSEMBL gene 14551 38205 . + . FI_gene_label "STIL^ENSG00000123473.16" ; ID "ZNF362--STIL^STIL^ENSG00000123473.16" ; ccdsid "CCDS72786.1" ; exon_id "ENSE00001064464.3" ; exon_number 3 ; gene_id "ZNF362--STIL^STIL^ENSG00000123473.16" ; gene_name STIL ; gene_type protein_coding ; havana_gene "OTTHUMG00000007851.4" ; hgnc_id "HGNC:10879" ; level 3 ; orig_coord_info "chr1,47310276,47310319,-" ; protein_id "ENSP00000337367.6" ; tag basic CCDS ; transcript_id "ZNF362--STIL^ENST00000337817.9" ; transcript_name "STIL-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZNF362--STIL ENSEMBL mRNA 14551 38205 . + . FI_gene_label "STIL^ENSG00000123473.16" ; ID "ZNF362--STIL^ENST00000337817.9" ; Parent "ZNF362--STIL^STIL^ENSG00000123473.16" ; ccdsid "CCDS72786.1" ; exon_id "ENSE00001064464.3" ; exon_number 3 ; gene_id "ZNF362--STIL^STIL^ENSG00000123473.16" ; gene_name STIL ; gene_type protein_coding ; havana_gene "OTTHUMG00000007851.4" ; hgnc_id "HGNC:10879" ; level 3 ; orig_coord_info "chr1,47310276,47310319,-" ; protein_id "ENSP00000337367.6" ; tag basic CCDS ; transcript_id "ZNF362--STIL^ENST00000337817.9" ; transcript_name "STIL-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZNF362--STIL ENSEMBL gene 2252 11550 . + . FI_gene_label "ZNF362^ENSG00000160094.15" ; ID "ZNF362--STIL^ZNF362^ENSG00000160094.15" ; ccdsid "CCDS377.1" ; exon_id "ENSE00001460551.4" ; exon_number 1 ; gene_id "ZNF362--STIL^ZNF362^ENSG00000160094.15" ; gene_name ZNF362 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004124.6" ; hgnc_id "HGNC:18079" ; level 3 ; orig_coord_info "chr1,33270575,33270612,+" ; protein_id "ENSP00000362527.5" ; tag basic appris_principal_1 CCDS ; transcript_id "ZNF362--STIL^ENST00000373428.5" ; transcript_name "ZNF362-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF362--STIL ENSEMBL mRNA 2252 11550 . + . FI_gene_label "ZNF362^ENSG00000160094.15" ; ID "ZNF362--STIL^ENST00000373428.5" ; Parent "ZNF362--STIL^ZNF362^ENSG00000160094.15" ; ccdsid "CCDS377.1" ; exon_id "ENSE00001460551.4" ; exon_number 1 ; gene_id "ZNF362--STIL^ZNF362^ENSG00000160094.15" ; gene_name ZNF362 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004124.6" ; hgnc_id "HGNC:18079" ; level 3 ; orig_coord_info "chr1,33270575,33270612,+" ; protein_id "ENSP00000362527.5" ; tag basic appris_principal_1 CCDS ; transcript_id "ZNF362--STIL^ENST00000373428.5" ; transcript_name "ZNF362-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
TACSTD2--AL353681.1 HAVANA gene 5821 8551 . + . FI_gene_label "AL353681.1^ENSG00000235612.1" ; ID "TACSTD2--AL353681.1^AL353681.1^ENSG00000235612.1" ; exon_id "ENSE00001763878.1" ; exon_number 1 ; gene_id "TACSTD2--AL353681.1^AL353681.1^ENSG00000235612.1" ; gene_name "AL353681.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000008126.2" ; havana_transcript "OTTHUMT00000022251.2" ; level 2 ; orig_coord_info "chr1,56145721,56145881,+" ; tag basic ; transcript_id "TACSTD2--AL353681.1^ENST00000435828.1" ; transcript_name "AL353681.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
TACSTD2--AL353681.1 HAVANA RNA 5821 8551 . + . FI_gene_label "AL353681.1^ENSG00000235612.1" ; ID "TACSTD2--AL353681.1^ENST00000435828.1" ; Parent "TACSTD2--AL353681.1^AL353681.1^ENSG00000235612.1" ; exon_id "ENSE00001763878.1" ; exon_number 1 ; gene_id "TACSTD2--AL353681.1^AL353681.1^ENSG00000235612.1" ; gene_name "AL353681.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000008126.2" ; havana_transcript "OTTHUMT00000022251.2" ; level 2 ; orig_coord_info "chr1,56145721,56145881,+" ; tag basic ; transcript_id "TACSTD2--AL353681.1^ENST00000435828.1" ; transcript_name "AL353681.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
TACSTD2--AL603840.1 HAVANA gene 8117 15237 . + . FI_gene_label "AL603840.1^ENSG00000234810.4" ; ID "TACSTD2--AL603840.1^AL603840.1^ENSG00000234810.4" ; exon_id "ENSE00001721335.1" ; exon_number 1 ; gene_id "TACSTD2--AL603840.1^AL603840.1^ENSG00000234810.4" ; gene_name "AL603840.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000008243.10" ; havana_transcript "OTTHUMT00000022603.1" ; level 2 ; orig_coord_info "chr1,55581037,55581194,+" ; tag basic ; transcript_id "TACSTD2--AL603840.1^ENST00000422374.1" ; transcript_name "AL603840.1-203" ; transcript_support_level 2 ; transcript_type lncRNA
TACSTD2--AL603840.1 HAVANA RNA 8117 15237 . + . FI_gene_label "AL603840.1^ENSG00000234810.4" ; ID "TACSTD2--AL603840.1^ENST00000422374.1" ; Parent "TACSTD2--AL603840.1^AL603840.1^ENSG00000234810.4" ; exon_id "ENSE00001721335.1" ; exon_number 1 ; gene_id "TACSTD2--AL603840.1^AL603840.1^ENSG00000234810.4" ; gene_name "AL603840.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000008243.10" ; havana_transcript "OTTHUMT00000022603.1" ; level 2 ; orig_coord_info "chr1,55581037,55581194,+" ; tag basic ; transcript_id "TACSTD2--AL603840.1^ENST00000422374.1" ; transcript_name "AL603840.1-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
385 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
783 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 33 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed