.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-fba77b-R1_A23YTGFLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2ff2e45df40bf92a593f07ff692a29/.command.log
Size: 1.3 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-fba77b-R1_A23YTGFLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2ff2e45df40bf92a593f07ff692a29/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2ff2e45df40bf92a593f07ff692a29/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/58c00a5676445ce81d1198eacbb0cc/aih-tih-sc-fba77b-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/6a6af39768c33f3c9bb5df5adf663c/aih-tih-sc-fba77b-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m
ATP9A--WRN
starfusion
arriba

  0%|          | 0/1 [00:00<?, ?it/s]
Processing ATP9A--WRN:   0%|          | 0/1 [00:00<?, ?it/s]
Processing ATP9A--WRN: 100%|██████████| 1/1 [00:00<00:00,  9.21it/s]
Processing ATP9A--WRN: 100%|██████████| 1/1 [00:00<00:00,  9.19it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory