Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/40702d2b683ea6797e44ec1fb3dc13/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/40702d2b683ea6797e44ec1fb3dc13/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/3f495784421297883ff82d85b94b1b/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/45d99ae9c98611c40a6b92484dca39/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
PRSS27--TPSB2
starfusion
TVP23C--CDRT4
arriba
CCAR2--AC055854.1
arriba
PAPOLA--RBMXP1
arriba
PAPOLA--FO393412.1
arriba
AC092807.3--DDAH1
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
STON1--GTF2A1L
arriba

  0%|          | 0/12 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   0%|          | 0/12 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   8%|▊         | 1/12 [00:00<00:01,  9.23it/s]
Processing TLK2--AC240565.1:   8%|▊         | 1/12 [00:00<00:01,  9.23it/s]  
Processing TLK2--AC240565.1:  17%|█▋        | 2/12 [00:00<00:01,  9.47it/s]
Processing PRSS27--TPSB2:  17%|█▋        | 2/12 [00:00<00:01,  9.47it/s]   
Processing PRSS27--TPSB2:  25%|██▌       | 3/12 [00:00<00:00,  9.55it/s]
Processing TVP23C--CDRT4:  25%|██▌       | 3/12 [00:00<00:00,  9.55it/s]
Processing TVP23C--CDRT4:  33%|███▎      | 4/12 [00:00<00:00,  9.58it/s]
Processing CCAR2--AC055854.1:  33%|███▎      | 4/12 [00:00<00:00,  9.58it/s]
Processing CCAR2--AC055854.1:  42%|████▏     | 5/12 [00:00<00:00,  9.61it/s]
Processing PAPOLA--RBMXP1:  42%|████▏     | 5/12 [00:00<00:00,  9.61it/s]   
Processing PAPOLA--RBMXP1:  50%|█████     | 6/12 [00:00<00:00,  9.62it/s]
Processing PAPOLA--FO393412.1:  50%|█████     | 6/12 [00:00<00:00,  9.62it/s]
Processing PAPOLA--FO393412.1:  58%|█████▊    | 7/12 [00:00<00:00,  9.63it/s]
Processing AC092807.3--DDAH1:  58%|█████▊    | 7/12 [00:00<00:00,  9.63it/s] 
Processing AC092807.3--DDAH1:  67%|██████▋   | 8/12 [00:00<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC1:  67%|██████▋   | 8/12 [00:00<00:00,  9.63it/s] 
Processing PCDHA10--PCDHAC1:  75%|███████▌  | 9/12 [00:00<00:00,  9.62it/s]
Processing PCDHA10--PCDHAC2:  75%|███████▌  | 9/12 [00:00<00:00,  9.62it/s]
Processing PCDHA10--PCDHAC2:  83%|████████▎ | 10/12 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHA13:  83%|████████▎ | 10/12 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHA13:  92%|█████████▏| 11/12 [00:01<00:00,  9.64it/s]
Processing STON1--GTF2A1L:  92%|█████████▏| 11/12 [00:01<00:00,  9.64it/s]  
Processing STON1--GTF2A1L: 100%|██████████| 12/12 [00:01<00:00,  9.64it/s]
Processing STON1--GTF2A1L: 100%|██████████| 12/12 [00:01<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory