File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/08918c18d2406d179d60aa08b7b8f5/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:25:16
                             Started mapping on |	Jun 08 09:31:50
                                    Finished on |	Jun 08 10:09:58
       Mapping speed, Million of reads per hour |	383.07

                          Number of input reads |	243463925
                      Average input read length |	227
                                    UNIQUE READS:
                   Uniquely mapped reads number |	234206619
                        Uniquely mapped reads % |	96.20%
                          Average mapped length |	226.28
                       Number of splices: Total |	219722313
            Number of splices: Annotated (sjdb) |	216060651
                       Number of splices: GT/AG |	216660405
                       Number of splices: GC/AG |	1592890
                       Number of splices: AT/AC |	168802
               Number of splices: Non-canonical |	1300216
                      Mismatch rate per base, % |	0.25%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.27
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.58
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6857636
             % of reads mapped to multiple loci |	2.82%
        Number of reads mapped to too many loci |	422612
             % of reads mapped to too many loci |	0.17%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1605277
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	371781
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%