File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/0cf7431a571ab0d34505f1edf4d8a2/.command.log
Size
9.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-9b89b4-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/5d5e24b851e83b7e8c7cb4c3b31dbf/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/0cf7431a571ab0d34505f1edf4d8a2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/0cf7431a571ab0d34505f1edf4d8a2/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/2b1c16c820b66cb59916677ed86330/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
CTTN--DLG2
starfusion
arriba
LSM1--ADAM2
starfusion
arriba
AL669831.4--SEPTIN14
starfusion
DLGAP2--ANKRD42
starfusion
arriba
FBXO25--DLGAP2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AP000487.1--ADGRA2
starfusion
arriba
PPP6R3--C11orf24
starfusion
arriba
CPT1A--FBXO25
starfusion
arriba
TLK2--AC240565.1
starfusion
FSIP1--AC013652.1
starfusion
arriba
PLPBP--NSD3
starfusion
AGAP12P--FRMPD2
starfusion
CYP7B1--ADAM32
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
BMS1P7--AGAP14P
starfusion
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
PPP6R3--AP002813.1
arriba
PPP6R3--LRP5
arriba
DLG2--AC091182.1
arriba
DLG2--AC091182.2
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHA13
arriba
KAT6A--AC105999.1
arriba
KAT6A--AC010857.1
arriba
PLEKHA2--ANK1
arriba
PLPBP--ASH2L
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
KAT6A--SIRLNT
arriba
ANKRD42--AC139365.1
arriba
ANKRD42--AC118650.1
arriba
TVP23C--CDRT4
arriba
MIR4457--TERT
arriba
CLPTM1L--TERT
arriba
PRR12--PPP5C
arriba
PRR12--CCDC8
arriba
LRP5--FBXO25
arriba
PSG8--CD177
arriba
CST9--CST9L
arriba
PMS2P8--CCDC146
arriba

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Processing CTTN--DLG2:   0%|          | 0/45 [00:00<?, ?it/s]
Processing CTTN--DLG2:   2%|▏         | 1/45 [00:00<00:04,  9.07it/s]
Processing LSM1--ADAM2:   2%|▏         | 1/45 [00:00<00:04,  9.07it/s]
Processing LSM1--ADAM2:   4%|▍         | 2/45 [00:00<00:04,  9.36it/s]
Processing AL669831.4--SEPTIN14:   4%|▍         | 2/45 [00:00<00:04,  9.36it/s]
Processing AL669831.4--SEPTIN14:   7%|▋         | 3/45 [00:00<00:04,  9.44it/s]
Processing DLGAP2--ANKRD42:   7%|▋         | 3/45 [00:00<00:04,  9.44it/s]     
Processing DLGAP2--ANKRD42:   9%|▉         | 4/45 [00:00<00:04,  9.46it/s]
Processing FBXO25--DLGAP2:   9%|▉         | 4/45 [00:00<00:04,  9.46it/s] 
Processing FBXO25--DLGAP2:  11%|█         | 5/45 [00:00<00:04,  9.40it/s]
Processing TLK2P1--AC110079.1:  11%|█         | 5/45 [00:00<00:04,  9.40it/s]
Processing TLK2P1--AC110079.1:  13%|█▎        | 6/45 [00:00<00:04,  9.45it/s]
Processing AP000487.1--ADGRA2:  13%|█▎        | 6/45 [00:00<00:04,  9.45it/s]
Processing AP000487.1--ADGRA2:  16%|█▌        | 7/45 [00:00<00:04,  9.47it/s]
Processing PPP6R3--C11orf24:  16%|█▌        | 7/45 [00:00<00:04,  9.47it/s]  
Processing PPP6R3--C11orf24:  18%|█▊        | 8/45 [00:00<00:03,  9.48it/s]
Processing CPT1A--FBXO25:  18%|█▊        | 8/45 [00:00<00:03,  9.48it/s]   
Processing CPT1A--FBXO25:  20%|██        | 9/45 [00:00<00:03,  9.49it/s]
Processing TLK2--AC240565.1:  20%|██        | 9/45 [00:00<00:03,  9.49it/s]
Processing TLK2--AC240565.1:  22%|██▏       | 10/45 [00:01<00:03,  9.50it/s]
Processing FSIP1--AC013652.1:  22%|██▏       | 10/45 [00:01<00:03,  9.50it/s]
Processing FSIP1--AC013652.1:  24%|██▍       | 11/45 [00:01<00:03,  9.49it/s]
Processing PLPBP--NSD3:  24%|██▍       | 11/45 [00:01<00:03,  9.49it/s]      
Processing PLPBP--NSD3:  27%|██▋       | 12/45 [00:01<00:03,  9.51it/s]
Processing AGAP12P--FRMPD2:  27%|██▋       | 12/45 [00:01<00:03,  9.51it/s]
Processing AGAP12P--FRMPD2:  29%|██▉       | 13/45 [00:01<00:03,  9.50it/s]
Processing CYP7B1--ADAM32:  29%|██▉       | 13/45 [00:01<00:03,  9.50it/s] 
Processing CYP7B1--ADAM32:  31%|███       | 14/45 [00:01<00:03,  9.51it/s]
Processing STX16--NPEPL1:  31%|███       | 14/45 [00:01<00:03,  9.51it/s] 
Processing STX16--NPEPL1:  33%|███▎      | 15/45 [00:01<00:03,  9.51it/s]
Processing BMS1P7--AGAP14P:  33%|███▎      | 15/45 [00:01<00:03,  9.51it/s]
Processing BMS1P7--AGAP14P:  36%|███▌      | 16/45 [00:01<00:03,  9.52it/s]
Processing PCDHA4--PCDHAC2:  36%|███▌      | 16/45 [00:01<00:03,  9.52it/s]
Processing PCDHA4--PCDHAC2:  38%|███▊      | 17/45 [00:01<00:02,  9.52it/s]
Processing PCDHA4--PCDHAC1:  38%|███▊      | 17/45 [00:01<00:02,  9.52it/s]
Processing PCDHA4--PCDHAC1:  40%|████      | 18/45 [00:01<00:02,  9.51it/s]
Processing PCDHA4--PCDHA13:  40%|████      | 18/45 [00:01<00:02,  9.51it/s]
Processing PCDHA4--PCDHA13:  42%|████▏     | 19/45 [00:02<00:02,  9.52it/s]
Processing PPP6R3--AP002813.1:  42%|████▏     | 19/45 [00:02<00:02,  9.52it/s]
Processing PPP6R3--AP002813.1:  44%|████▍     | 20/45 [00:02<00:02,  9.52it/s]
Processing PPP6R3--LRP5:  44%|████▍     | 20/45 [00:02<00:02,  9.52it/s]      
Processing PPP6R3--LRP5:  47%|████▋     | 21/45 [00:02<00:02,  9.53it/s]
Processing DLG2--AC091182.1:  47%|████▋     | 21/45 [00:02<00:02,  9.53it/s]
Processing DLG2--AC091182.1:  49%|████▉     | 22/45 [00:02<00:02,  9.53it/s]
Processing DLG2--AC091182.2:  49%|████▉     | 22/45 [00:02<00:02,  9.53it/s]
Processing DLG2--AC091182.2:  51%|█████     | 23/45 [00:02<00:02,  9.52it/s]
Processing PCDHA11--PCDHAC2:  51%|█████     | 23/45 [00:02<00:02,  9.52it/s]
Processing PCDHA11--PCDHAC2:  53%|█████▎    | 24/45 [00:02<00:02,  9.52it/s]
Processing PCDHA11--PCDHAC1:  53%|█████▎    | 24/45 [00:02<00:02,  9.52it/s]
Processing PCDHA11--PCDHAC1:  56%|█████▌    | 25/45 [00:02<00:02,  9.53it/s]
Processing PCDHA11--PCDHA13:  56%|█████▌    | 25/45 [00:02<00:02,  9.53it/s]
Processing PCDHA11--PCDHA13:  58%|█████▊    | 26/45 [00:02<00:01,  9.52it/s]
Processing KAT6A--AC105999.1:  58%|█████▊    | 26/45 [00:02<00:01,  9.52it/s]
Processing KAT6A--AC105999.1:  60%|██████    | 27/45 [00:02<00:01,  9.54it/s]
Processing KAT6A--AC010857.1:  60%|██████    | 27/45 [00:02<00:01,  9.54it/s]
Processing KAT6A--AC010857.1:  62%|██████▏   | 28/45 [00:02<00:01,  9.53it/s]
Processing PLEKHA2--ANK1:  62%|██████▏   | 28/45 [00:02<00:01,  9.53it/s]    
Processing PLEKHA2--ANK1:  64%|██████▍   | 29/45 [00:03<00:01,  9.53it/s]
Processing PLPBP--ASH2L:  64%|██████▍   | 29/45 [00:03<00:01,  9.53it/s] 
Processing PLPBP--ASH2L:  67%|██████▋   | 30/45 [00:03<00:01,  9.52it/s]
Processing PCDHA6--PCDHAC1:  67%|██████▋   | 30/45 [00:03<00:01,  9.52it/s]
Processing PCDHA6--PCDHAC1:  69%|██████▉   | 31/45 [00:03<00:01,  9.52it/s]
Processing PCDHA6--PCDHAC2:  69%|██████▉   | 31/45 [00:03<00:01,  9.52it/s]
Processing PCDHA6--PCDHAC2:  71%|███████   | 32/45 [00:03<00:01,  9.52it/s]
Processing PCDHA6--PCDHA13:  71%|███████   | 32/45 [00:03<00:01,  9.52it/s]
Processing PCDHA6--PCDHA13:  73%|███████▎  | 33/45 [00:03<00:01,  9.53it/s]
Processing KAT6A--SIRLNT:  73%|███████▎  | 33/45 [00:03<00:01,  9.53it/s]  
Processing KAT6A--SIRLNT:  76%|███████▌  | 34/45 [00:03<00:01,  9.51it/s]
Processing ANKRD42--AC139365.1:  76%|███████▌  | 34/45 [00:03<00:01,  9.51it/s]
Processing ANKRD42--AC139365.1:  78%|███████▊  | 35/45 [00:03<00:01,  9.53it/s]
Processing ANKRD42--AC118650.1:  78%|███████▊  | 35/45 [00:03<00:01,  9.53it/s]
Processing ANKRD42--AC118650.1:  80%|████████  | 36/45 [00:03<00:00,  9.54it/s]
Processing TVP23C--CDRT4:  80%|████████  | 36/45 [00:03<00:00,  9.54it/s]      
Processing TVP23C--CDRT4:  82%|████████▏ | 37/45 [00:03<00:00,  9.53it/s]
Processing MIR4457--TERT:  82%|████████▏ | 37/45 [00:03<00:00,  9.53it/s]
Processing MIR4457--TERT:  84%|████████▍ | 38/45 [00:03<00:00,  9.51it/s]
Processing CLPTM1L--TERT:  84%|████████▍ | 38/45 [00:04<00:00,  9.51it/s]
Processing CLPTM1L--TERT:  87%|████████▋ | 39/45 [00:04<00:00,  9.49it/s]
Processing PRR12--PPP5C:  87%|████████▋ | 39/45 [00:04<00:00,  9.49it/s] 
Processing PRR12--PPP5C:  89%|████████▉ | 40/45 [00:04<00:00,  9.48it/s]
Processing PRR12--CCDC8:  89%|████████▉ | 40/45 [00:04<00:00,  9.48it/s]
Processing PRR12--CCDC8:  91%|█████████ | 41/45 [00:04<00:00,  9.50it/s]
Processing LRP5--FBXO25:  91%|█████████ | 41/45 [00:04<00:00,  9.50it/s]
Processing LRP5--FBXO25:  93%|█████████▎| 42/45 [00:04<00:00,  9.50it/s]
Processing PSG8--CD177:  93%|█████████▎| 42/45 [00:04<00:00,  9.50it/s] 
Processing PSG8--CD177:  96%|█████████▌| 43/45 [00:04<00:00,  9.51it/s]
Processing CST9--CST9L:  96%|█████████▌| 43/45 [00:04<00:00,  9.51it/s]
Processing CST9--CST9L:  98%|█████████▊| 44/45 [00:04<00:00,  9.52it/s]
Processing PMS2P8--CCDC146:  98%|█████████▊| 44/45 [00:04<00:00,  9.52it/s]
Processing PMS2P8--CCDC146: 100%|██████████| 45/45 [00:04<00:00,  9.53it/s]
Processing PMS2P8--CCDC146: 100%|██████████| 45/45 [00:04<00:00,  9.50it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory