File Info
- Filename
- aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/0cf7431a571ab0d34505f1edf4d8a2/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.fusions.csv
- Size
- 11.0 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-9b89b4-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| CTTN--DLG2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:70420510#chr11:84534731,reading-frame: out-of-frame,type: inversion,split_reads1: 300,split_reads2: 260,discordant_mates: 8,coverage1: 6693,coverage2: 3590,confidence: high | position: chr11:70420510:+#chr11:84534731:-,junction_reads: 1929,spanning_reads: 9,ffmp: 6.5305 | |
| LSM1--ADAM2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:38176275#chr8:39837212,reading-frame: in-frame,type: duplication,split_reads1: 204,split_reads2: 110,discordant_mates: 2,coverage1: 14559,coverage2: 783,confidence: high | position: chr8:38176275:-#chr8:39837212:-,junction_reads: 319,spanning_reads: 1,ffmp: 1.079 | |
| AL669831.4--SEPTIN14 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:805799:-#chr7:55796092:-,junction_reads: 162,spanning_reads: 0,ffmp: 0.3573 | ||
| DLGAP2--ANKRD42 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:1258883#chr11:83206058,reading-frame: out-of-frame,type: translocation,split_reads1: 3,split_reads2: 143,discordant_mates: 0,coverage1: 62,coverage2: 1256,confidence: high | position: chr8:1258883:+#chr11:83206058:+,junction_reads: 154,spanning_reads: 0,ffmp: 0.5193 | |
| FBXO25--DLGAP2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:451453#chr8:1258851,reading-frame: out-of-frame,type: deletion,split_reads1: 49,split_reads2: 17,discordant_mates: 1,coverage1: 1071,coverage2: 62,confidence: high | position: chr8:451453:+#chr8:1258851:+,junction_reads: 70,spanning_reads: 1,ffmp: 0.2394 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 41,spanning_reads: 0,ffmp: 0.1256 | ||
| AP000487.1--ADGRA2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:70398098#chr8:37835554,reading-frame: .,type: translocation,split_reads1: 5,split_reads2: 30,discordant_mates: 0,coverage1: 20,coverage2: 2872,confidence: high | position: chr11:70398098:-#chr8:37835554:+,junction_reads: 36,spanning_reads: 0,ffmp: 0.1214 | |
| PPP6R3--C11orf24 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:68537891#chr11:68268251,reading-frame: out-of-frame,type: inversion,split_reads1: 23,split_reads2: 7,discordant_mates: 1,coverage1: 3345,coverage2: 29,confidence: high | position: chr11:68537891:+#chr11:68268251:-,junction_reads: 31,spanning_reads: 1,ffmp: 0.1079 | |
| CPT1A--FBXO25 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:68773265#chr8:458369,reading-frame: in-frame,type: translocation,split_reads1: 17,split_reads2: 9,discordant_mates: 0,coverage1: 1128,coverage2: 1213,confidence: high | position: chr11:68773265:-#chr8:458369:+,junction_reads: 26,spanning_reads: 0,ffmp: 0.0877 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 25,spanning_reads: 0,ffmp: 0.0282 | ||
| FSIP1--AC013652.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:39600845#chr15:39071608,reading-frame: .,type: deletion,split_reads1: 19,split_reads2: 2,discordant_mates: 0,coverage1: 870,coverage2: 3,confidence: high | position: chr15:39600845:-#chr15:39071608:-,junction_reads: 22,spanning_reads: 0,ffmp: 0.0742 | |
| PLPBP--NSD3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:37766355:+#chr8:38316042:-,junction_reads: 19,spanning_reads: 2,ffmp: 0.0708 | ||
| AGAP12P--FRMPD2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:48025897:-#chr10:48181008:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0292 | ||
| CYP7B1--ADAM32 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:64798466#chr8:39221610,reading-frame: out-of-frame,type: inversion,split_reads1: 7,split_reads2: 4,discordant_mates: 0,coverage1: 837,coverage2: 169,confidence: high | position: chr8:64798466:-#chr8:39221610:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0371 | |
| STX16--NPEPL1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 76,split_reads2: 64,discordant_mates: 2,coverage1: 2938,coverage2: 467,confidence: high | position: chr20:58673711:+#chr20:58691724:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0303 | |
| BMS1P7--AGAP14P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:48050282:-#chr10:46337259:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0152 | ||
| PCDHA4--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 106,split_reads2: 113,discordant_mates: 4,coverage1: 1074,coverage2: 2808,confidence: high | ||
| PCDHA4--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 106,split_reads2: 113,discordant_mates: 4,coverage1: 1074,coverage2: 2808,confidence: high | ||
| PCDHA4--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 106,split_reads2: 113,discordant_mates: 4,coverage1: 1074,coverage2: 2808,confidence: high | ||
| PPP6R3--AP002813.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:68537891#chr11:68290770,reading-frame: out-of-frame,type: inversion,split_reads1: 169,split_reads2: 39,discordant_mates: 4,coverage1: 3345,coverage2: 77,confidence: high | ||
| PPP6R3--LRP5 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr11:68537891#chr11:68290770,reading-frame: out-of-frame,type: inversion,split_reads1: 169,split_reads2: 39,discordant_mates: 4,coverage1: 3345,coverage2: 77,confidence: high | |
| DLG2--AC091182.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:84534570#chr8:37387048,reading-frame: out-of-frame,type: translocation,split_reads1: 156,split_reads2: 17,discordant_mates: 1,coverage1: 2019,coverage2: 42,confidence: high | ||
| DLG2--AC091182.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:84534570#chr8:37387048,reading-frame: out-of-frame,type: translocation,split_reads1: 156,split_reads2: 17,discordant_mates: 1,coverage1: 2019,coverage2: 42,confidence: high | ||
| PCDHA11--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 83,split_reads2: 71,discordant_mates: 0,coverage1: 845,coverage2: 2808,confidence: high | ||
| PCDHA11--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 83,split_reads2: 71,discordant_mates: 0,coverage1: 845,coverage2: 2808,confidence: high | ||
| PCDHA11--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 83,split_reads2: 71,discordant_mates: 0,coverage1: 845,coverage2: 2808,confidence: high | ||
| KAT6A--AC105999.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:42048378#chr8:40418551,reading-frame: out-of-frame,type: inversion,split_reads1: 142,split_reads2: 7,discordant_mates: 1,coverage1: 3097,coverage2: 8,confidence: high | ||
| KAT6A--AC010857.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:42048378#chr8:40418551,reading-frame: out-of-frame,type: inversion,split_reads1: 142,split_reads2: 7,discordant_mates: 1,coverage1: 3097,coverage2: 8,confidence: high | ||
| PLEKHA2--ANK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:38901446#chr8:41758137,reading-frame: .,type: inversion,split_reads1: 42,split_reads2: 102,discordant_mates: 0,coverage1: 546,coverage2: 335,confidence: high | ||
| PLPBP--ASH2L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:37762758#chr8:38107405,reading-frame: out-of-frame,type: inversion/3'-3',split_reads1: 104,split_reads2: 34,discordant_mates: 0,coverage1: 6144,coverage2: 63,confidence: high | ||
| PCDHA6--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 92,discordant_mates: 0,coverage1: 371,coverage2: 2808,confidence: high | ||
| PCDHA6--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 92,discordant_mates: 0,coverage1: 371,coverage2: 2808,confidence: high | ||
| PCDHA6--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 92,discordant_mates: 0,coverage1: 371,coverage2: 2808,confidence: high | ||
| KAT6A--SIRLNT | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:42048378#chr8:40357260,reading-frame: out-of-frame,type: inversion,split_reads1: 119,split_reads2: 4,discordant_mates: 1,coverage1: 3097,coverage2: 8,confidence: high | ||
| ANKRD42--AC139365.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:83236509#chr8:45639111,reading-frame: out-of-frame,type: translocation,split_reads1: 54,split_reads2: 18,discordant_mates: 1,coverage1: 2965,coverage2: 45,confidence: high | ||
| ANKRD42--AC118650.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:83236509#chr8:45639111,reading-frame: out-of-frame,type: translocation,split_reads1: 54,split_reads2: 18,discordant_mates: 1,coverage1: 2965,coverage2: 45,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 40,split_reads2: 32,discordant_mates: 1,coverage1: 481,coverage2: 244,confidence: high | |
| MIR4457--TERT | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:1315261#chr5:1282624,reading-frame: .,type: deletion/read-through,split_reads1: 25,split_reads2: 46,discordant_mates: 0,coverage1: 143,coverage2: 601,confidence: high | ||
| CLPTM1L--TERT | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:1315261#chr5:1282624,reading-frame: .,type: deletion/read-through,split_reads1: 25,split_reads2: 46,discordant_mates: 0,coverage1: 143,coverage2: 601,confidence: high | ||
| PRR12--PPP5C | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:49615009#chr19:46404470,reading-frame: out-of-frame,type: inversion,split_reads1: 36,split_reads2: 13,discordant_mates: 1,coverage1: 2414,coverage2: 18,confidence: high | ||
| PRR12--CCDC8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:49615009#chr19:46404470,reading-frame: out-of-frame,type: inversion,split_reads1: 36,split_reads2: 13,discordant_mates: 1,coverage1: 2414,coverage2: 18,confidence: high | ||
| LRP5--FBXO25 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:68340481#chr8:458369,reading-frame: .,type: translocation/3'-3',split_reads1: 4,split_reads2: 18,discordant_mates: 0,coverage1: 8,coverage2: 1213,confidence: high | ||
| PSG8--CD177 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:42762047#chr19:43353853,reading-frame: .,type: deletion/3'-3',split_reads1: 4,split_reads2: 9,discordant_mates: 0,coverage1: 4,coverage2: 621,confidence: high | ||
| CST9--CST9L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:23603621#chr20:23565037,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 6,discordant_mates: 0,coverage1: 267,coverage2: 71,confidence: high | ||
| PMS2P8--CCDC146 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:73041421#chr7:77236947,reading-frame: .,type: deletion,split_reads1: 3,split_reads2: 8,discordant_mates: 0,coverage1: 1357,coverage2: 435,confidence: high |
46 rows