Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/6fce480862453544850e23e942b736/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/6fce480862453544850e23e942b736/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/3f282d8051bb23468a6a7ad4066241/aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/01bdbdc28275f3c8ecdfda99896927/aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory