File Info

Filename
aih-tih-sc-b6fd19-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/4e12943b487bccbdda4ced16e1e404/aih-tih-sc-b6fd19-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:40:19
                             Started mapping on |	Jun 08 07:42:19
                                    Finished on |	Jun 08 08:39:27
       Mapping speed, Million of reads per hour |	311.57

                          Number of input reads |	296685615
                      Average input read length |	260
                                    UNIQUE READS:
                   Uniquely mapped reads number |	284827093
                        Uniquely mapped reads % |	96.00%
                          Average mapped length |	260.21
                       Number of splices: Total |	326289413
            Number of splices: Annotated (sjdb) |	321731830
                       Number of splices: GT/AG |	323230737
                       Number of splices: GC/AG |	2303287
                       Number of splices: AT/AC |	256123
               Number of splices: Non-canonical |	499266
                      Mismatch rate per base, % |	0.17%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.11
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.68
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6934274
             % of reads mapped to multiple loci |	2.34%
        Number of reads mapped to too many loci |	210281
             % of reads mapped to too many loci |	0.07%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	569849
       % of reads unmapped: too many mismatches |	0.19%
            Number of reads unmapped: too short |	2117899
                 % of reads unmapped: too short |	0.71%
                Number of reads unmapped: other |	180295
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3393137
                            % of chimeric reads |	1.14%