Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/0734f77412ec58e675bc615016ec7c/aih-tih-sc-0754d2-R1_A23YTGFLT4_1_2.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/1e710377721187d00adf408ca01ee0/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/1e710377721187d00adf408ca01ee0/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/0734f77412ec58e675bc615016ec7c/aih-tih-sc-0754d2-R1_A23YTGFLT4_1_1.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/dae1d6aa7b1426d476226fd533566f/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)
-ctat genome lib [/tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.ZNEdBQDLuY/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary
-sample contains 29706015 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir -J /tmp/nxf.ZNEdBQDLuY/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.Chimeric.out.junction -O /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.ZNEdBQDLuY/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
[10000], rate=54545.45/min
[20000], rate=54545.45/min
[30000], rate=54545.45/min
[40000], rate=60000.00/min
[50000], rate=65217.39/min
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[80000], rate=72727.27/min
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[420000], rate=110043.67/min
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[440000], rate=106024.10/min -building interval tree based on /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
[10000], rate=200000.00/min
[20000], rate=240000.00/min
[30000], rate=225000.00/min
[40000], rate=171428.57/min
[50000], rate=166666.67/min
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[100000], rate=181818.18/min
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[250000], rate=166666.67/min
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[280000], rate=112000.00/min
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[300000], rate=98901.10/min
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[400000], rate=85409.25/min
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[420000], rate=81290.32/min
[430000], rate=80373.83/min -building interval tree based on /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
[10000], rate=100000.00/min
[20000], rate=100000.00/min
[30000], rate=75000.00/min
[40000], rate=72727.27/min
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[430000], rate=72676.06/min -building interval tree based on /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
[10000], rate=66666.67/min
[20000], rate=57142.86/min
[30000], rate=51428.57/min
[40000], rate=51063.83/min
[50000], rate=50000.00/min
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[410000], rate=61042.18/min
[420000], rate=61165.05/min
[430000], rate=60280.37/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir --filt_file /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
6000000.00 reads per min processed...
12000000.00 reads per min processed...
6000000.00 reads per min processed...
4800000.00 reads per min processed...
3750000.00 reads per min processed...
3600000.00 reads per min processed...
3500000.00 reads per min processed...
3428571.43 reads per min processed...
3857142.86 reads per min processed...
4000000.00 reads per min processed...
4125000.00 reads per min processed...
4000000.00 reads per min processed...
3900000.00 reads per min processed...
3818181.82 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.ZNEdBQDLuY/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -83145.535877
EM: Round [1] log likelihood: -83064.273820
EM: Round [2] log likelihood: -83029.282866
EM: Round [3] log likelihood: -83011.890089
EM: Round [4] log likelihood: -83002.645708
EM: Round [5] log likelihood: -82997.504989
EM: Round [6] log likelihood: -82994.519424
EM: Round [7] log likelihood: -82992.703701
EM: Round [8] log likelihood: -82991.546813
EM: Round [9] log likelihood: -82990.776768
EM: Round [10] log likelihood: -82990.243960
EM: Round [11] log likelihood: -82989.862898
EM: Round [12] log likelihood: -82989.582711
EM: Round [13] log likelihood: -82989.371899
EM: Round [14] log likelihood: -82989.210218
EM: Round [15] log likelihood: -82989.084210
EM: Round [16] log likelihood: -82988.984663
EM: Round [17] log likelihood: -82988.905102
EM: Round [18] log likelihood: -82988.840875
EM: Round [19] log likelihood: -82988.788574
EM: Round [20] log likelihood: -82988.745658
EM: Round [21] log likelihood: -82988.710206
EM: Round [22] log likelihood: -82988.680743
EM: Round [23] log likelihood: -82988.656127
EM: Round [24] log likelihood: -82988.635459
EM: Round [25] log likelihood: -82988.618030
EM: Round [26] log likelihood: -82988.603273
EM: Round [27] log likelihood: -82988.590731
EM: Round [28] log likelihood: -82988.580032
EM: Round [29] log likelihood: -82988.570877
EM: Round [30] log likelihood: -82988.563015
EM: Round [31] log likelihood: -82988.556244
EM: Round [32] log likelihood: -82988.550394
EM: Round [33] log likelihood: -82988.545324
EM: Round [34] log likelihood: -82988.540917
EM: Round [35] log likelihood: -82988.537074
EM: Round [36] log likelihood: -82988.533712
EM: Round [37] log likelihood: -82988.530762
EM: Round [38] log likelihood: -82988.528165
EM: Round [39] log likelihood: -82988.525870
EM: Round [40] log likelihood: -82988.523837
EM: Round [41] log likelihood: -82988.522028
EM: Round [42] log likelihood: -82988.520414
EM: Round [43] log likelihood: -82988.518967
EM: Round [44] log likelihood: -82988.517666
EM: Round [45] log likelihood: -82988.516491
EM: Round [46] log likelihood: -82988.515426
EM: Round [47] log likelihood: -82988.514458
EM: Round [48] log likelihood: -82988.513573
EM: Round [49] log likelihood: -82988.512761
EM: Round [50] log likelihood: -82988.512014
EM: Round [51] log likelihood: -82988.511324
EM: Round [52] log likelihood: -82988.510684
EM: Round [53] log likelihood: -82988.510088
EM: Round [54] log likelihood: -82988.509532
EM: Round [55] log likelihood: -82988.509010
EM: Round [56] log likelihood: -82988.508519
EM: Round [57] log likelihood: -82988.508056
EM: Round [58] log likelihood: -82988.507618
EM: Round [59] log likelihood: -82988.507202
EM: Round [60] log likelihood: -82988.506807
EM: Round [61] log likelihood: -82988.506430
EM: Round [62] log likelihood: -82988.506069
EM: Round [63] log likelihood: -82988.505724
EM: Round [64] log likelihood: -82988.505393
EM: Round [65] log likelihood: -82988.505075
EM: Round [66] log likelihood: -82988.504769
EM: Round [67] log likelihood: -82988.504473
EM: Round [68] log likelihood: -82988.504188
EM: Round [69] log likelihood: -82988.503912
EM: Round [70] log likelihood: -82988.503645
EM: Round [71] log likelihood: -82988.503387
EM: Round [72] log likelihood: -82988.503136
EM: Round [73] log likelihood: -82988.502893
EM: Round [74] log likelihood: -82988.502657
EM: Round [75] log likelihood: -82988.502428
EM: Round [76] log likelihood: -82988.502205
EM: Round [77] log likelihood: -82988.501988
EM: Round [78] log likelihood: -82988.501777
EM: Round [79] log likelihood: -82988.501572
EM: Round [80] log likelihood: -82988.501372
EM: Round [81] log likelihood: -82988.501177
EM: Round [82] log likelihood: -82988.500987
EM: Round [83] log likelihood: -82988.500802
EM: Round [84] log likelihood: -82988.500622
EM: Round [85] log likelihood: -82988.500446
EM: Round [86] log likelihood: -82988.500275
EM: Round [87] log likelihood: -82988.500108
EM: Round [88] log likelihood: -82988.499946
EM: Round [89] log likelihood: -82988.499787
EM: Round [90] log likelihood: -82988.499632
EM: Round [91] log likelihood: -82988.499481
EM: Round [92] log likelihood: -82988.499334
EM: Round [93] log likelihood: -82988.499190
EM: Round [94] log likelihood: -82988.499050
EM: Round [95] log likelihood: -82988.498914
EM: Round [96] log likelihood: -82988.498780
EM: Round [97] log likelihood: -82988.498651
EM: Round [98] log likelihood: -82988.498524
EM: Round [99] log likelihood: -82988.498400
EM: Round [100] log likelihood: -82988.498280
EM: Round [101] log likelihood: -82988.498163
EM: Round [102] log likelihood: -82988.498048
EM: Round [103] log likelihood: -82988.497936
EM: Round [104] log likelihood: -82988.497828
EM: Round [105] log likelihood: -82988.497721
EM: Round [106] log likelihood: -82988.497618
EM: Round [107] log likelihood: -82988.497517
EM: Round [108] log likelihood: -82988.497419
EM: Stopping iterations at round 108 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -83095.255537
EM: Round [1] log likelihood: -83026.373424
EM: Round [2] log likelihood: -82998.595011
EM: Round [3] log likelihood: -82985.347006
EM: Round [4] log likelihood: -82978.468763
EM: Round [5] log likelihood: -82974.692800
EM: Round [6] log likelihood: -82972.518142
EM: Round [7] log likelihood: -82971.205611
EM: Round [8] log likelihood: -82970.376096
EM: Round [9] log likelihood: -82969.828468
EM: Round [10] log likelihood: -82969.452284
EM: Round [11] log likelihood: -82969.184673
EM: Round [12] log likelihood: -82968.988504
EM: Round [13] log likelihood: -82968.841027
EM: Round [14] log likelihood: -82968.727804
EM: Round [15] log likelihood: -82968.639354
EM: Round [16] log likelihood: -82968.569255
EM: Round [17] log likelihood: -82968.513032
EM: Round [18] log likelihood: -82968.467488
EM: Round [19] log likelihood: -82968.430283
EM: Round [20] log likelihood: -82968.399674
EM: Round [21] log likelihood: -82968.374338
EM: Round [22] log likelihood: -82968.353255
EM: Round [23] log likelihood: -82968.335629
EM: Round [24] log likelihood: -82968.320831
EM: Round [25] log likelihood: -82968.308362
EM: Round [26] log likelihood: -82968.297817
EM: Round [27] log likelihood: -82968.288872
EM: Round [28] log likelihood: -82968.281259
EM: Round [29] log likelihood: -82968.274761
EM: Round [30] log likelihood: -82968.269198
EM: Round [31] log likelihood: -82968.264422
EM: Round [32] log likelihood: -82968.260310
EM: Round [33] log likelihood: -82968.256759
EM: Round [34] log likelihood: -82968.253683
EM: Round [35] log likelihood: -82968.251010
EM: Round [36] log likelihood: -82968.248680
EM: Round [37] log likelihood: -82968.246643
EM: Round [38] log likelihood: -82968.244855
EM: Round [39] log likelihood: -82968.243280
EM: Round [40] log likelihood: -82968.241888
EM: Round [41] log likelihood: -82968.240653
EM: Round [42] log likelihood: -82968.239553
EM: Round [43] log likelihood: -82968.238569
EM: Round [44] log likelihood: -82968.237685
EM: Round [45] log likelihood: -82968.236888
EM: Round [46] log likelihood: -82968.236167
EM: Round [47] log likelihood: -82968.235510
EM: Round [48] log likelihood: -82968.234910
EM: Round [49] log likelihood: -82968.234360
EM: Round [50] log likelihood: -82968.233853
EM: Round [51] log likelihood: -82968.233384
EM: Round [52] log likelihood: -82968.232948
EM: Round [53] log likelihood: -82968.232542
EM: Round [54] log likelihood: -82968.232162
EM: Round [55] log likelihood: -82968.231805
EM: Round [56] log likelihood: -82968.231469
EM: Round [57] log likelihood: -82968.231151
EM: Round [58] log likelihood: -82968.230849
EM: Round [59] log likelihood: -82968.230563
EM: Round [60] log likelihood: -82968.230289
EM: Round [61] log likelihood: -82968.230028
EM: Round [62] log likelihood: -82968.229779
EM: Round [63] log likelihood: -82968.229539
EM: Round [64] log likelihood: -82968.229308
EM: Round [65] log likelihood: -82968.229087
EM: Round [66] log likelihood: -82968.228873
EM: Round [67] log likelihood: -82968.228666
EM: Round [68] log likelihood: -82968.228467
EM: Round [69] log likelihood: -82968.228274
EM: Round [70] log likelihood: -82968.228087
EM: Round [71] log likelihood: -82968.227906
EM: Round [72] log likelihood: -82968.227730
EM: Round [73] log likelihood: -82968.227560
EM: Round [74] log likelihood: -82968.227394
EM: Round [75] log likelihood: -82968.227233
EM: Round [76] log likelihood: -82968.227077
EM: Round [77] log likelihood: -82968.226925
EM: Round [78] log likelihood: -82968.226777
EM: Round [79] log likelihood: -82968.226633
EM: Round [80] log likelihood: -82968.226493
EM: Round [81] log likelihood: -82968.226357
EM: Round [82] log likelihood: -82968.226224
EM: Round [83] log likelihood: -82968.226095
EM: Round [84] log likelihood: -82968.225969
EM: Round [85] log likelihood: -82968.225846
EM: Round [86] log likelihood: -82968.225727
EM: Round [87] log likelihood: -82968.225611
EM: Round [88] log likelihood: -82968.225497
EM: Round [89] log likelihood: -82968.225387
EM: Round [90] log likelihood: -82968.225279
EM: Round [91] log likelihood: -82968.225175
EM: Round [92] log likelihood: -82968.225073
EM: Round [93] log likelihood: -82968.224973
EM: Stopping iterations at round 93 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 29706015 > /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir > /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir --annotate /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir
-done, see /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 835, filtered: 4508)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.ZNEdBQDLuY/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.ZNEdBQDLuY/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000287121.1]
WARNING, no entry stored in dbm for [ENSG00000254275.6]
WARNING, no entry stored in dbm for [ENSG00000187600.14]
WARNING, no entry stored in dbm for [ENSG00000260464.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000213090.2]
WARNING, no entry stored in dbm for [ENSG00000218175.2]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000280061.1]
WARNING, no entry stored in dbm for [ENSG00000287679.1]
WARNING, no entry stored in dbm for [ENSG00000205485.13]
WARNING, no entry stored in dbm for [ENSG00000287710.1]
WARNING, no entry stored in dbm for [ENSG00000235674.2]
WARNING, no entry stored in dbm for [ENSG00000261040.7]
WARNING, no entry stored in dbm for [ENSG00000259950.1]
WARNING, no entry stored in dbm for [ENSG00000279036.1]
WARNING, no entry stored in dbm for [ENSG00000256663.1]
WARNING, no entry stored in dbm for [ENSG00000234964.4]
WARNING, no entry stored in dbm for [ENSG00000235211.4]
WARNING, no entry stored in dbm for [ENSG00000260864.1]
WARNING, no entry stored in dbm for [ENSG00000242741.2]
WARNING, no entry stored in dbm for [ENSG00000259057.1]
WARNING, no entry stored in dbm for [ENSG00000222826.1]
WARNING, no entry stored in dbm for [ENSG00000233133.1]
WARNING, no entry stored in dbm for [ENSG00000128438.10]
WARNING, no entry stored in dbm for [ENSG00000128438.10]
WARNING, no entry stored in dbm for [ENSG00000226823.1]
WARNING, no entry stored in dbm for [ENSG00000251593.1]
WARNING, no entry stored in dbm for [ENSG00000271643.2]
WARNING, no entry stored in dbm for [ENSG00000261192.1]
WARNING, no entry stored in dbm for [ENSG00000225511.7]
WARNING, no entry stored in dbm for [ENSG00000251562.8]
WARNING, no entry stored in dbm for [ENSG00000228374.1]
WARNING, no entry stored in dbm for [ENSG00000213935.3]
WARNING, no entry stored in dbm for [ENSG00000241129.3]
WARNING, no entry stored in dbm for [ENSG00000180764.13]
WARNING, no entry stored in dbm for [ENSG00000238825.1]
WARNING, no entry stored in dbm for [ENSG00000207205.1]
WARNING, no entry stored in dbm for [ENSG00000199197.1]
WARNING, no entry stored in dbm for [ENSG00000222448.1]
WARNING, no entry stored in dbm for [ENSG00000271161.1]
WARNING, no entry stored in dbm for [ENSG00000235908.1]
WARNING, no entry stored in dbm for [ENSG00000255410.2]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000270938.1]
WARNING, no entry stored in dbm for [ENSG00000249007.1]
WARNING, no entry stored in dbm for [ENSG00000259241.1]
WARNING, no entry stored in dbm for [ENSG00000240211.1]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000254681.6]
WARNING, no entry stored in dbm for [ENSG00000251562.8]
WARNING, no entry stored in dbm for [ENSG00000218426.5]
WARNING, no entry stored in dbm for [ENSG00000223705.9]
WARNING, no entry stored in dbm for [ENSG00000187812.12]
WARNING, no entry stored in dbm for [ENSG00000228818.1]
WARNING, no entry stored in dbm for [ENSG00000228526.7]
WARNING, no entry stored in dbm for [ENSG00000270069.1]
WARNING, no entry stored in dbm for [ENSG00000196312.15]
WARNING, no entry stored in dbm for [ENSG00000237729.2]
WARNING, no entry stored in dbm for [ENSG00000251562.8]
WARNING, no entry stored in dbm for [ENSG00000275716.1]
WARNING, no entry stored in dbm for [ENSG00000257139.1]
WARNING, no entry stored in dbm for [ENSG00000255008.3]
WARNING, no entry stored in dbm for [ENSG00000231566.2]
WARNING, no entry stored in dbm for [ENSG00000250358.6]
WARNING, no entry stored in dbm for [ENSG00000263146.2]
WARNING, no entry stored in dbm for [ENSG00000237491.10]
WARNING, no entry stored in dbm for [ENSG00000237491.10]
WARNING, no entry stored in dbm for [ENSG00000244578.1]
WARNING, no entry stored in dbm for [ENSG00000204054.14]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000225511.7]
WARNING, no entry stored in dbm for [ENSG00000236871.7]
WARNING, no entry stored in dbm for [ENSG00000224468.3]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000224129.1]
WARNING, no entry stored in dbm for [ENSG00000225851.1]
WARNING, no entry stored in dbm for [ENSG00000225465.10]
WARNING, no entry stored in dbm for [ENSG00000258667.2]
WARNING, no entry stored in dbm for [ENSG00000248932.6]
WARNING, no entry stored in dbm for [ENSG00000262202.4]
WARNING, no entry stored in dbm for [ENSG00000206417.8]
WARNING, no entry stored in dbm for [ENSG00000265863.1]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000259394.2]
WARNING, no entry stored in dbm for [ENSG00000233485.1]
WARNING, no entry stored in dbm for [ENSG00000182057.5]
WARNING, no entry stored in dbm for [ENSG00000196167.10]
WARNING, no entry stored in dbm for [ENSG00000271569.1]
WARNING, no entry stored in dbm for [ENSG00000225210.10]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000176124.15]
WARNING, no entry stored in dbm for [ENSG00000235706.8]
WARNING, no entry stored in dbm for [ENSG00000232111.2]
WARNING, no entry stored in dbm for [ENSG00000258471.2]
WARNING, no entry stored in dbm for [ENSG00000270533.2]
WARNING, no entry stored in dbm for [ENSG00000261783.1]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000259577.2]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000235574.1]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000222826.1]
WARNING, no entry stored in dbm for [ENSG00000260372.7]
WARNING, no entry stored in dbm for [ENSG00000230479.1]
WARNING, no entry stored in dbm for [ENSG00000213365.3]
WARNING, no entry stored in dbm for [ENSG00000283064.1]
WARNING, no entry stored in dbm for [ENSG00000228685.1]
WARNING, no entry stored in dbm for [ENSG00000234851.4]
WARNING, no entry stored in dbm for [ENSG00000286108.1]
WARNING, no entry stored in dbm for [ENSG00000258656.1]
WARNING, no entry stored in dbm for [ENSG00000271335.6]
WARNING, no entry stored in dbm for [ENSG00000285646.2]
WARNING, no entry stored in dbm for [ENSG00000229425.3]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000265069.1]
WARNING, no entry stored in dbm for [ENSG00000237250.3]
WARNING, no entry stored in dbm for [ENSG00000274265.5]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000239969.5]
WARNING, no entry stored in dbm for [ENSG00000242073.2]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000229930.1]
WARNING, no entry stored in dbm for [ENSG00000260670.1]
WARNING, no entry stored in dbm for [ENSG00000198555.7]
WARNING, no entry stored in dbm for [ENSG00000214135.8]
WARNING, no entry stored in dbm for [ENSG00000243929.1]
WARNING, no entry stored in dbm for [ENSG00000237666.2]
WARNING, no entry stored in dbm for [ENSG00000237666.2]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000239969.5]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [ENSG00000272693.4]
WARNING, no entry stored in dbm for [ENSG00000229212.8]
WARNING, no entry stored in dbm for [ENSG00000242327.1]
WARNING, no entry stored in dbm for [ENSG00000226659.1]
WARNING, no entry stored in dbm for [ENSG00000234624.2]
WARNING, no entry stored in dbm for [ENSG00000261329.6]
WARNING, no entry stored in dbm for [ENSG00000267605.7]
WARNING, no entry stored in dbm for [ENSG00000255106.1]
WARNING, no entry stored in dbm for [ENSG00000241741.1]
WARNING, no entry stored in dbm for [ENSG00000254887.1]
WARNING, no entry stored in dbm for [ENSG00000253297.1]
WARNING, no entry stored in dbm for [ENSG00000224415.1]
WARNING, no entry stored in dbm for [ENSG00000185641.6]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000205485.13]
WARNING, no entry stored in dbm for [ENSG00000228204.2]
WARNING, no entry stored in dbm for [ENSG00000235776.2]
* STAR-Fusion complete. See output: /tmp/nxf.ZNEdBQDLuY/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)