File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/f6722845f22470b121d8607c146df8/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:36:42
                             Started mapping on |	Jun 08 09:43:08
                                    Finished on |	Jun 08 10:23:44
       Mapping speed, Million of reads per hour |	355.10

                          Number of input reads |	240287619
                      Average input read length |	230
                                    UNIQUE READS:
                   Uniquely mapped reads number |	228815271
                        Uniquely mapped reads % |	95.23%
                          Average mapped length |	230.05
                       Number of splices: Total |	205016541
            Number of splices: Annotated (sjdb) |	201400536
                       Number of splices: GT/AG |	202471832
                       Number of splices: GC/AG |	1321537
                       Number of splices: AT/AC |	128448
               Number of splices: Non-canonical |	1094724
                      Mismatch rate per base, % |	0.26%
                         Deletion rate per base |	0.04%
                        Deletion average length |	1.83
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.61
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8522368
             % of reads mapped to multiple loci |	3.55%
        Number of reads mapped to too many loci |	1122965
             % of reads mapped to too many loci |	0.47%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1520738
                 % of reads unmapped: too short |	0.63%
                Number of reads unmapped: other |	306277
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%