File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/8e8d9bf3f9ddeb142b51efc10e9b4a/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:48:49
                             Started mapping on |	Jun 08 09:55:38
                                    Finished on |	Jun 08 10:56:07
       Mapping speed, Million of reads per hour |	250.41

                          Number of input reads |	252431623
                      Average input read length |	231
                                    UNIQUE READS:
                   Uniquely mapped reads number |	242747226
                        Uniquely mapped reads % |	96.16%
                          Average mapped length |	230.91
                       Number of splices: Total |	245867077
            Number of splices: Annotated (sjdb) |	241659053
                       Number of splices: GT/AG |	243244626
                       Number of splices: GC/AG |	1272215
                       Number of splices: AT/AC |	115771
               Number of splices: Non-canonical |	1234465
                      Mismatch rate per base, % |	0.34%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.03
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.67
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6870452
             % of reads mapped to multiple loci |	2.72%
        Number of reads mapped to too many loci |	638938
             % of reads mapped to too many loci |	0.25%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1815396
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	359611
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%