File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/24f973107c57e7a93d05345f030490/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:59:12
                             Started mapping on |	Jun 08 10:05:51
                                    Finished on |	Jun 08 11:06:05
       Mapping speed, Million of reads per hour |	241.15

                          Number of input reads |	242091830
                      Average input read length |	227
                                    UNIQUE READS:
                   Uniquely mapped reads number |	228789868
                        Uniquely mapped reads % |	94.51%
                          Average mapped length |	226.80
                       Number of splices: Total |	208926554
            Number of splices: Annotated (sjdb) |	205922042
                       Number of splices: GT/AG |	206295823
                       Number of splices: GC/AG |	1353065
                       Number of splices: AT/AC |	155948
               Number of splices: Non-canonical |	1121718
                      Mismatch rate per base, % |	0.30%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.17
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.51
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9739782
             % of reads mapped to multiple loci |	4.02%
        Number of reads mapped to too many loci |	1714693
             % of reads mapped to too many loci |	0.71%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1596646
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	250841
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%