Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/0fa084155c5f61beb0554ca0eca964/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/0fa084155c5f61beb0554ca0eca964/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/e963f580a4992dca43ab693e7c6488/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/dae1d6aa7b1426d476226fd533566f/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 18005294
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-0754d2-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	18005294
Known Splicing Events:	17754047
Partial Novel Splicing Events:	142330
Novel Splicing Events:	97554
Filtered Splicing Events:	11363

Total splicing  Junctions:	154190
Known Splicing Junctions:	136772
Partial Novel Splicing Junctions:	11432
Novel Splicing Junctions:	5986

===================================================================
Create BED file ...
Create Interact file ...