File Info

Filename
aih-tih-sc-150e73-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/39477d52a2eed0d9bae00888a91138/aih-tih-sc-150e73-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:41:17
                             Started mapping on |	Jun 08 07:43:21
                                    Finished on |	Jun 08 08:43:48
       Mapping speed, Million of reads per hour |	293.38

                          Number of input reads |	295584842
                      Average input read length |	245
                                    UNIQUE READS:
                   Uniquely mapped reads number |	279314962
                        Uniquely mapped reads % |	94.50%
                          Average mapped length |	244.94
                       Number of splices: Total |	284398554
            Number of splices: Annotated (sjdb) |	280315502
                       Number of splices: GT/AG |	281650928
                       Number of splices: GC/AG |	2077765
                       Number of splices: AT/AC |	211372
               Number of splices: Non-canonical |	458489
                      Mismatch rate per base, % |	0.25%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.65
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10739542
             % of reads mapped to multiple loci |	3.63%
        Number of reads mapped to too many loci |	244956
             % of reads mapped to too many loci |	0.08%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	828476
       % of reads unmapped: too many mismatches |	0.28%
            Number of reads unmapped: too short |	2398508
                 % of reads unmapped: too short |	0.81%
                Number of reads unmapped: other |	268932
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3448044
                            % of chimeric reads |	1.17%