Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/e5a7a4d389cad2e128115632d3ccd9/aih-tih-sc-318819-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/a3ab784247ab3dbd41b99f8d70f63e/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/a3ab784247ab3dbd41b99f8d70f63e/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/6dfdc3c8fbf031c945e269343bc749/aih-tih-sc-318819-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
CLIP2--GTF2I
starfusion
arriba
TLK2P1--AC110079.1
starfusion
PLEKHG1--MTHFD1L
starfusion
CTBP2--FAM53B
starfusion
TCF25--TUBB3
arriba
0%| | 0/5 [00:00<?, ?it/s]
Processing CLIP2--GTF2I: 0%| | 0/5 [00:00<?, ?it/s]
Processing CLIP2--GTF2I: 20%|██ | 1/5 [00:00<00:00, 9.27it/s]
Processing TLK2P1--AC110079.1: 20%|██ | 1/5 [00:00<00:00, 9.27it/s]
Processing TLK2P1--AC110079.1: 40%|████ | 2/5 [00:00<00:00, 9.49it/s]
Processing PLEKHG1--MTHFD1L: 40%|████ | 2/5 [00:00<00:00, 9.49it/s]
Processing PLEKHG1--MTHFD1L: 60%|██████ | 3/5 [00:00<00:00, 9.57it/s]
Processing CTBP2--FAM53B: 60%|██████ | 3/5 [00:00<00:00, 9.57it/s]
Processing CTBP2--FAM53B: 80%|████████ | 4/5 [00:00<00:00, 9.60it/s]
Processing TCF25--TUBB3: 80%|████████ | 4/5 [00:00<00:00, 9.60it/s]
Processing TCF25--TUBB3: 100%|██████████| 5/5 [00:00<00:00, 9.62it/s]
Processing TCF25--TUBB3: 100%|██████████| 5/5 [00:00<00:00, 9.58it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory