.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (NTC_0001_0001_A23YTGFLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/7dfd8e453dd4d8ebf0dc8ac097ef9d/.command.log
Size: 813 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (NTC_0001_0001_A23YTGFLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/1cfc2527b21ad301486d1ffc8ae569/NTC_0001_0001_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/7dfd8e453dd4d8ebf0dc8ac097ef9d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/7dfd8e453dd4d8ebf0dc8ac097ef9d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/3d374f29854e82c1348fadba0277c3/NTC_0001_0001_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory