File Info

Filename
aih-tih-sc-0754d2-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/dae1d6aa7b1426d476226fd533566f/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:24:05
                             Started mapping on |	Jun 08 07:26:08
                                    Finished on |	Jun 08 07:31:28
       Mapping speed, Million of reads per hour |	334.19

                          Number of input reads |	29706015
                      Average input read length |	218
                                    UNIQUE READS:
                   Uniquely mapped reads number |	27085876
                        Uniquely mapped reads % |	91.18%
                          Average mapped length |	218.98
                       Number of splices: Total |	17932738
            Number of splices: Annotated (sjdb) |	17545176
                       Number of splices: GT/AG |	17674143
                       Number of splices: GC/AG |	205713
                       Number of splices: AT/AC |	11626
               Number of splices: Non-canonical |	41256
                      Mismatch rate per base, % |	0.40%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.66
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	1903831
             % of reads mapped to multiple loci |	6.41%
        Number of reads mapped to too many loci |	40405
             % of reads mapped to too many loci |	0.14%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	64895
       % of reads unmapped: too many mismatches |	0.22%
            Number of reads unmapped: too short |	327276
                 % of reads unmapped: too short |	1.10%
                Number of reads unmapped: other |	42452
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	417070
                            % of chimeric reads |	1.40%