Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/6cb105540a1ed951459c452c221279/aih-tih-sc-a558c6-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/b5ffefb0303d01085bc1e94fbd38e5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/b2760449d35b3fc5302194ce2381ce/aih-tih-sc-a558c6-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/b5ffefb0303d01085bc1e94fbd38e5/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
CDR2L--SLC39A11
starfusion
arriba
RARA--EFCAB3
starfusion
arriba
MSI2--TEX14
starfusion
arriba
UNK--TANC2
starfusion
arriba
SLC9A3R1--CEP112
starfusion
arriba
STRADA--ZNF652
starfusion
arriba
SLC39A11--WBP2
starfusion
arriba
PDXK--SPATC1L
starfusion
arriba
YPEL2--THRA
starfusion
arriba
UNC13D--PSMD3
starfusion
arriba
WDR4--FP236383.3
starfusion
ABR--PECAM1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
STARD3--PPM1D
starfusion
arriba
PCDHGB5--PPP2R2B
starfusion
arriba
PRKCZ--ARID1A
starfusion
arriba
TLK2--AL669831.1
starfusion
SNHG16--CEP131
arriba
TMPRSS2--RUNX1
arriba
TLK2--CASC17
arriba
PSMD3--MILR1
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
KLRC4--KLRK1
arriba
PRPSAP1--AC105021.1
arriba
PRPSAP1--TMEM100
arriba

  0%|          | 0/27 [00:00<?, ?it/s]
Processing CDR2L--SLC39A11:   0%|          | 0/27 [00:00<?, ?it/s]
Processing CDR2L--SLC39A11:   4%|▎         | 1/27 [00:00<00:02,  9.16it/s]
Processing RARA--EFCAB3:   4%|▎         | 1/27 [00:00<00:02,  9.16it/s]   
Processing RARA--EFCAB3:   7%|▋         | 2/27 [00:00<00:02,  9.35it/s]
Processing MSI2--TEX14:   7%|▋         | 2/27 [00:00<00:02,  9.35it/s] 
Processing MSI2--TEX14:  11%|█         | 3/27 [00:00<00:02,  9.41it/s]
Processing UNK--TANC2:  11%|█         | 3/27 [00:00<00:02,  9.41it/s] 
Processing UNK--TANC2:  15%|█▍        | 4/27 [00:00<00:02,  9.44it/s]
Processing SLC9A3R1--CEP112:  15%|█▍        | 4/27 [00:00<00:02,  9.44it/s]
Processing SLC9A3R1--CEP112:  19%|█▊        | 5/27 [00:00<00:02,  9.46it/s]
Processing STRADA--ZNF652:  19%|█▊        | 5/27 [00:00<00:02,  9.46it/s]  
Processing STRADA--ZNF652:  22%|██▏       | 6/27 [00:00<00:02,  9.46it/s]
Processing SLC39A11--WBP2:  22%|██▏       | 6/27 [00:00<00:02,  9.46it/s]
Processing SLC39A11--WBP2:  26%|██▌       | 7/27 [00:00<00:02,  9.46it/s]
Processing PDXK--SPATC1L:  26%|██▌       | 7/27 [00:00<00:02,  9.46it/s] 
Processing PDXK--SPATC1L:  30%|██▉       | 8/27 [00:00<00:02,  9.46it/s]
Processing YPEL2--THRA:  30%|██▉       | 8/27 [00:00<00:02,  9.46it/s]  
Processing YPEL2--THRA:  33%|███▎      | 9/27 [00:00<00:01,  9.45it/s]
Processing UNC13D--PSMD3:  33%|███▎      | 9/27 [00:00<00:01,  9.45it/s]
Processing UNC13D--PSMD3:  37%|███▋      | 10/27 [00:01<00:01,  9.45it/s]
Processing WDR4--FP236383.3:  37%|███▋      | 10/27 [00:01<00:01,  9.45it/s]
Processing WDR4--FP236383.3:  41%|████      | 11/27 [00:01<00:01,  9.45it/s]
Processing ABR--PECAM1:  41%|████      | 11/27 [00:01<00:01,  9.45it/s]     
Processing ABR--PECAM1:  44%|████▍     | 12/27 [00:01<00:01,  9.45it/s]
Processing TLK2P1--AC110079.1:  44%|████▍     | 12/27 [00:01<00:01,  9.45it/s]
Processing TLK2P1--AC110079.1:  48%|████▊     | 13/27 [00:01<00:01,  9.45it/s]
Processing STARD3--PPM1D:  48%|████▊     | 13/27 [00:01<00:01,  9.45it/s]     
Processing STARD3--PPM1D:  52%|█████▏    | 14/27 [00:01<00:01,  9.45it/s]
Processing PCDHGB5--PPP2R2B:  52%|█████▏    | 14/27 [00:01<00:01,  9.45it/s]
Processing PCDHGB5--PPP2R2B:  56%|█████▌    | 15/27 [00:01<00:01,  9.46it/s]
Processing PRKCZ--ARID1A:  56%|█████▌    | 15/27 [00:01<00:01,  9.46it/s]   
Processing PRKCZ--ARID1A:  59%|█████▉    | 16/27 [00:01<00:01,  9.46it/s]
Processing TLK2--AL669831.1:  59%|█████▉    | 16/27 [00:01<00:01,  9.46it/s]
Processing TLK2--AL669831.1:  63%|██████▎   | 17/27 [00:01<00:01,  9.46it/s]
Processing SNHG16--CEP131:  63%|██████▎   | 17/27 [00:01<00:01,  9.46it/s]  
Processing SNHG16--CEP131:  67%|██████▋   | 18/27 [00:01<00:00,  9.46it/s]
Processing TMPRSS2--RUNX1:  67%|██████▋   | 18/27 [00:01<00:00,  9.46it/s]
Processing TMPRSS2--RUNX1:  70%|███████   | 19/27 [00:02<00:00,  9.47it/s]
Processing TLK2--CASC17:  70%|███████   | 19/27 [00:02<00:00,  9.47it/s]  
Processing TLK2--CASC17:  74%|███████▍  | 20/27 [00:02<00:00,  9.47it/s]
Processing PSMD3--MILR1:  74%|███████▍  | 20/27 [00:02<00:00,  9.47it/s]
Processing PSMD3--MILR1:  78%|███████▊  | 21/27 [00:02<00:00,  9.46it/s]
Processing PCDHA11--PCDHAC1:  78%|███████▊  | 21/27 [00:02<00:00,  9.46it/s]
Processing PCDHA11--PCDHAC1:  81%|████████▏ | 22/27 [00:02<00:00,  9.46it/s]
Processing PCDHA11--PCDHAC2:  81%|████████▏ | 22/27 [00:02<00:00,  9.46it/s]
Processing PCDHA11--PCDHAC2:  85%|████████▌ | 23/27 [00:02<00:00,  9.46it/s]
Processing PCDHA11--PCDHA13:  85%|████████▌ | 23/27 [00:02<00:00,  9.46it/s]
Processing PCDHA11--PCDHA13:  89%|████████▉ | 24/27 [00:02<00:00,  9.46it/s]
Processing KLRC4--KLRK1:  89%|████████▉ | 24/27 [00:02<00:00,  9.46it/s]    
Processing KLRC4--KLRK1:  93%|█████████▎| 25/27 [00:02<00:00,  9.45it/s]
Processing PRPSAP1--AC105021.1:  93%|█████████▎| 25/27 [00:02<00:00,  9.45it/s]
Processing PRPSAP1--AC105021.1:  96%|█████████▋| 26/27 [00:02<00:00,  9.45it/s]
Processing PRPSAP1--TMEM100:  96%|█████████▋| 26/27 [00:02<00:00,  9.45it/s]   
Processing PRPSAP1--TMEM100: 100%|██████████| 27/27 [00:02<00:00,  9.46it/s]
Processing PRPSAP1--TMEM100: 100%|██████████| 27/27 [00:02<00:00,  9.45it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory