File Info
- Filename
- aih-tih-sc-a558c6-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/b5ffefb0303d01085bc1e94fbd38e5/aih-tih-sc-a558c6-R1_A23YTGFLT4_1.fusions.csv
- Size
- 7.4 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-a558c6-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| CDR2L--SLC39A11 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:74988122#chr17:73031714,reading-frame: out-of-frame,type: inversion,split_reads1: 269,split_reads2: 218,discordant_mates: 0,coverage1: 2811,coverage2: 2168,confidence: high | position: chr17:74988122:+#chr17:73031714:-,junction_reads: 523,spanning_reads: 0,ffmp: 3.5437 | |
| RARA--EFCAB3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:40352507#chr17:62406480,reading-frame: out-of-frame,type: deletion,split_reads1: 56,split_reads2: 82,discordant_mates: 0,coverage1: 5768,coverage2: 575,confidence: high | position: chr17:40352507:+#chr17:62406480:+,junction_reads: 147,spanning_reads: 0,ffmp: 0.9958 | |
| MSI2--TEX14 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:57262192#chr17:58652002,reading-frame: out-of-frame,type: inversion,split_reads1: 50,split_reads2: 21,discordant_mates: 0,coverage1: 5200,coverage2: 125,confidence: high | position: chr17:57262192:+#chr17:58652002:-,junction_reads: 75,spanning_reads: 0,ffmp: 0.5082 | |
| UNK--TANC2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:75820108#chr17:63099175,reading-frame: in-frame,type: duplication,split_reads1: 23,split_reads2: 34,discordant_mates: 0,coverage1: 1388,coverage2: 1098,confidence: high | position: chr17:75820108:+#chr17:63099175:+,junction_reads: 61,spanning_reads: 0,ffmp: 0.4133 | |
| SLC9A3R1--CEP112 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:74749287#chr17:65927689,reading-frame: in-frame,type: inversion,split_reads1: 24,split_reads2: 33,discordant_mates: 0,coverage1: 4066,coverage2: 424,confidence: high | position: chr17:74749287:+#chr17:65927689:-,junction_reads: 59,spanning_reads: 0,ffmp: 0.3998 | |
| STRADA--ZNF652 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:63714006#chr17:49322508,reading-frame: out-of-frame,type: deletion,split_reads1: 22,split_reads2: 8,discordant_mates: 0,coverage1: 1518,coverage2: 31,confidence: high | position: chr17:63714006:-#chr17:49322508:-,junction_reads: 41,spanning_reads: 0,ffmp: 0.2778 | |
| SLC39A11--WBP2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:72947752#chr17:75851676,reading-frame: out-of-frame,type: duplication,split_reads1: 23,split_reads2: 13,discordant_mates: 0,coverage1: 1132,coverage2: 582,confidence: high | position: chr17:72947752:-#chr17:75851676:-,junction_reads: 37,spanning_reads: 0,ffmp: 0.2507 | |
| PDXK--SPATC1L | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr21:43719381#chr21:46168658,reading-frame: out-of-frame,type: inversion,split_reads1: 18,split_reads2: 11,discordant_mates: 0,coverage1: 1413,coverage2: 278,confidence: high | position: chr21:43719381:+#chr21:46168658:-,junction_reads: 29,spanning_reads: 0,ffmp: 0.1965 | |
| YPEL2--THRA | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:59353526#chr17:40074192,reading-frame: out-of-frame,type: duplication,split_reads1: 19,split_reads2: 3,discordant_mates: 0,coverage1: 489,coverage2: 16,confidence: high | position: chr17:59353526:+#chr17:40074192:+,junction_reads: 24,spanning_reads: 0,ffmp: 0.1626 | |
| UNC13D--PSMD3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:75842433#chr17:39988683,reading-frame: out-of-frame,type: inversion,split_reads1: 7,split_reads2: 11,discordant_mates: 0,coverage1: 1100,coverage2: 1097,confidence: high | position: chr17:75842433:-#chr17:39988683:+,junction_reads: 19,spanning_reads: 0,ffmp: 0.1287 | |
| WDR4--FP236383.3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr21:42855682:-#chr21:8451533:+,junction_reads: 17,spanning_reads: 0,ffmp: 0.0384 | ||
| ABR--PECAM1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:1108934#chr17:64329722,reading-frame: out-of-frame,type: duplication,split_reads1: 4,split_reads2: 14,discordant_mates: 0,coverage1: 2168,coverage2: 1067,confidence: high | position: chr17:1108934:-#chr17:64323845:-,junction_reads: 16,spanning_reads: 0,ffmp: 0.1084 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0817 | ||
| STARD3--PPM1D | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:39637231#chr17:60623521,reading-frame: .,type: deletion,split_reads1: 2,split_reads2: 10,discordant_mates: 0,coverage1: 344,coverage2: 523,confidence: high | position: chr17:39637231:+#chr17:60623521:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0881 | |
| PCDHGB5--PPP2R2B | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr5:141400524#chr5:146650724,reading-frame: in-frame,type: inversion,split_reads1: 4,split_reads2: 7,discordant_mates: 0,coverage1: 403,coverage2: 87,confidence: high | position: chr5:141400524:+#chr5:146650724:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0745 | |
| PRKCZ--ARID1A | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:2059591#chr1:26771119,reading-frame: out-of-frame,type: deletion,split_reads1: 3,split_reads2: 6,discordant_mates: 0,coverage1: 335,coverage2: 736,confidence: high | position: chr1:2059591:+#chr1:26771119:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.061 | |
| TLK2--AL669831.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr1:774280:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0145 | ||
| SNHG16--CEP131 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:76559043#chr17:81196981,reading-frame: .,type: deletion/5'-5',split_reads1: 27,split_reads2: 38,discordant_mates: 0,coverage1: 61,coverage2: 3658,confidence: high | ||
| TMPRSS2--RUNX1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr21:41494356#chr21:35943613,reading-frame: out-of-frame,type: deletion,split_reads1: 20,split_reads2: 3,discordant_mates: 0,coverage1: 1652,coverage2: 19,confidence: high | ||
| TLK2--CASC17 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62586226#chr17:71109698,reading-frame: out-of-frame,type: deletion/5'-5',split_reads1: 16,split_reads2: 1,discordant_mates: 0,coverage1: 424,coverage2: 1,confidence: high | ||
| PSMD3--MILR1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:39990197#chr17:64450375,reading-frame: out-of-frame,type: inversion/3'-3',split_reads1: 11,split_reads2: 5,discordant_mates: 0,coverage1: 2355,coverage2: 12,confidence: high | ||
| PCDHA11--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 6,discordant_mates: 0,coverage1: 420,coverage2: 684,confidence: high | ||
| PCDHA11--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 6,discordant_mates: 0,coverage1: 420,coverage2: 684,confidence: high | ||
| PCDHA11--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 6,discordant_mates: 0,coverage1: 420,coverage2: 684,confidence: high | ||
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 8,split_reads2: 3,discordant_mates: 0,coverage1: 97,coverage2: 302,confidence: high | ||
| PRPSAP1--AC105021.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:76353534#chr17:55608709,reading-frame: out-of-frame,type: deletion,split_reads1: 6,split_reads2: 4,discordant_mates: 0,coverage1: 1154,coverage2: 4,confidence: high | ||
| PRPSAP1--TMEM100 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:76353534#chr17:55608709,reading-frame: out-of-frame,type: deletion,split_reads1: 6,split_reads2: 4,discordant_mates: 0,coverage1: 1154,coverage2: 4,confidence: high |
28 rows