File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/6d033c58ea0e595766bc0537bafea9/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 12 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 253
  Pass (FILTER=PASS): 17 (6.7%)
  Fail (FILTER=FAIL): 236 (93.3%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 12
  All 12 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 53
  confidence_below_min(medium<high): 47
  confidence_below_min(low<high): 25
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 23
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 13
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 10
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 10
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 9
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 7
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 4
  confidence_below_min(medium<high);aih_curated_blacklist: 3
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 3

Breakdown by confidence:
  high: 17 pass, 3 fail (total: 20)
  low: 0 pass, 100 fail (total: 100)
  medium: 0 pass, 133 fail (total: 133)
Arriba filter: 253 rows -> 17 PASS; wrote aih-tih-sc-538ae3-R1_A23YTGFLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-538ae3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-538ae3-R1_A23YTGFLT4_1.arriba.fusions.filter_summary.txt