Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/9ff7d993bff5316a0d1fde84300ac1/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/a10ffb3fdc2c87ef3dcf50ede93f71/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/a10ffb3fdc2c87ef3dcf50ede93f71/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a3d6247466bac9ff49aca312dfb9cd/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
processing aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ... Finished