File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/e75bf40d738f529db087e9a4f32869/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:21:37
                             Started mapping on |	Jun 08 10:28:12
                                    Finished on |	Jun 08 11:58:40
       Mapping speed, Million of reads per hour |	196.46

                          Number of input reads |	296219478
                      Average input read length |	249
                                    UNIQUE READS:
                   Uniquely mapped reads number |	286996426
                        Uniquely mapped reads % |	96.89%
                          Average mapped length |	248.24
                       Number of splices: Total |	415076020
            Number of splices: Annotated (sjdb) |	410673053
                       Number of splices: GT/AG |	411923361
                       Number of splices: GC/AG |	1259795
                       Number of splices: AT/AC |	89952
               Number of splices: Non-canonical |	1802912
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.83
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6040259
             % of reads mapped to multiple loci |	2.04%
        Number of reads mapped to too many loci |	289598
             % of reads mapped to too many loci |	0.10%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2609679
                 % of reads unmapped: too short |	0.88%
                Number of reads unmapped: other |	283516
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%