Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/ede7fe8471f0212b1c4231581dee05/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/df7770b0f0012aabcda2bd0b0f66bb/aih-tih-sc-92d360-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/ede7fe8471f0212b1c4231581dee05/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/94c2af5e8b54e0837dfaa3ba7a98ce/aih-tih-sc-92d360-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
ESR1--AKAP12
starfusion
arriba
RARA--ERBB2
starfusion
arriba
NCOR1--TEKT3
starfusion
arriba
ABHD2--RAP1GAP2
starfusion
arriba
MCTP2--AC087633.2
starfusion
arriba
DAB1--MYSM1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
arriba
VPS13C--LINC02694
starfusion
TLK2--AC240565.1
starfusion
RTN4--MTIF2
starfusion
RTN4--CLHC1
starfusion
NCOR1--AC005703.4
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
CLUH--SNTG1
arriba
PCDHA4--PCDHA13
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
OMA1--MYSM1
arriba
ERBB4--PID1
arriba

  0%|          | 0/21 [00:00<?, ?it/s]
Processing ESR1--AKAP12:   0%|          | 0/21 [00:00<?, ?it/s]
Processing ESR1--AKAP12:   5%|▍         | 1/21 [00:00<00:02,  9.26it/s]
Processing RARA--ERBB2:   5%|▍         | 1/21 [00:00<00:02,  9.26it/s] 
Processing RARA--ERBB2:  10%|▉         | 2/21 [00:00<00:02,  9.49it/s]
Processing NCOR1--TEKT3:  10%|▉         | 2/21 [00:00<00:02,  9.49it/s]
Processing NCOR1--TEKT3:  14%|█▍        | 3/21 [00:00<00:01,  9.56it/s]
Processing ABHD2--RAP1GAP2:  14%|█▍        | 3/21 [00:00<00:01,  9.56it/s]
Processing ABHD2--RAP1GAP2:  19%|█▉        | 4/21 [00:00<00:01,  9.60it/s]
Processing MCTP2--AC087633.2:  19%|█▉        | 4/21 [00:00<00:01,  9.60it/s]
Processing MCTP2--AC087633.2:  24%|██▍       | 5/21 [00:00<00:01,  9.62it/s]
Processing DAB1--MYSM1:  24%|██▍       | 5/21 [00:00<00:01,  9.62it/s]      
Processing DAB1--MYSM1:  29%|██▊       | 6/21 [00:00<00:01,  9.63it/s]
Processing TLK2P1--AC110079.1:  29%|██▊       | 6/21 [00:00<00:01,  9.63it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 7/21 [00:00<00:01,  9.64it/s]
Processing VPS13C--LINC02694:  33%|███▎      | 7/21 [00:00<00:01,  9.64it/s] 
Processing VPS13C--LINC02694:  38%|███▊      | 8/21 [00:00<00:01,  9.64it/s]
Processing TLK2--AC240565.1:  38%|███▊      | 8/21 [00:00<00:01,  9.64it/s] 
Processing TLK2--AC240565.1:  43%|████▎     | 9/21 [00:00<00:01,  9.65it/s]
Processing RTN4--MTIF2:  43%|████▎     | 9/21 [00:00<00:01,  9.65it/s]     
Processing RTN4--MTIF2:  48%|████▊     | 10/21 [00:01<00:01,  9.65it/s]
Processing RTN4--CLHC1:  48%|████▊     | 10/21 [00:01<00:01,  9.65it/s]
Processing RTN4--CLHC1:  52%|█████▏    | 11/21 [00:01<00:01,  9.65it/s]
Processing NCOR1--AC005703.4:  52%|█████▏    | 11/21 [00:01<00:01,  9.65it/s]
Processing NCOR1--AC005703.4:  57%|█████▋    | 12/21 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  57%|█████▋    | 12/21 [00:01<00:00,  9.65it/s]  
Processing PCDHA4--PCDHAC2:  62%|██████▏   | 13/21 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC1:  62%|██████▏   | 13/21 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC1:  67%|██████▋   | 14/21 [00:01<00:00,  9.65it/s]
Processing CLUH--SNTG1:  67%|██████▋   | 14/21 [00:01<00:00,  9.65it/s]    
Processing CLUH--SNTG1:  71%|███████▏  | 15/21 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  71%|███████▏  | 15/21 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  76%|███████▌  | 16/21 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  76%|███████▌  | 16/21 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  81%|████████  | 17/21 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  81%|████████  | 17/21 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  86%|████████▌ | 18/21 [00:01<00:00,  9.66it/s]
Processing PCDHA10--PCDHA13:  86%|████████▌ | 18/21 [00:01<00:00,  9.66it/s]
Processing PCDHA10--PCDHA13:  90%|█████████ | 19/21 [00:01<00:00,  9.66it/s]
Processing OMA1--MYSM1:  90%|█████████ | 19/21 [00:01<00:00,  9.66it/s]     
Processing OMA1--MYSM1:  95%|█████████▌| 20/21 [00:02<00:00,  9.66it/s]
Processing ERBB4--PID1:  95%|█████████▌| 20/21 [00:02<00:00,  9.66it/s]
Processing ERBB4--PID1: 100%|██████████| 21/21 [00:02<00:00,  9.66it/s]
Processing ERBB4--PID1: 100%|██████████| 21/21 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory