File Info
- Filename
- aih-tih-sc-92d360-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/ede7fe8471f0212b1c4231581dee05/aih-tih-sc-92d360-R1_A23YTGFLT4_1.fusions.csv
- Size
- 5.3 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-92d360-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| ESR1--AKAP12 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr6:151842787#chr6:151348711,reading-frame: in-frame,type: duplication,split_reads1: 255,split_reads2: 299,discordant_mates: 0,coverage1: 41903,coverage2: 13084,confidence: high | position: chr6:151842787:+#chr6:151348711:+,junction_reads: 1048,spanning_reads: 0,ffmp: 4.3289 |
| RARA--ERBB2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:40331378#chr17:39702555,reading-frame: out-of-frame,type: duplication,split_reads1: 304,split_reads2: 300,discordant_mates: 4,coverage1: 56358,coverage2: 1271,confidence: high | position: chr17:40331365:+#chr17:39706990:+,junction_reads: 739,spanning_reads: 1,ffmp: 3.0567 | |
| NCOR1--TEKT3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:16098367#chr17:15331614,reading-frame: out-of-frame,type: deletion,split_reads1: 57,split_reads2: 65,discordant_mates: 0,coverage1: 2640,coverage2: 1217,confidence: high | position: chr17:16098367:-#chr17:15331614:-,junction_reads: 124,spanning_reads: 1,ffmp: 0.5154 | |
| ABHD2--RAP1GAP2 | FusionGDB2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * (0.000) | position: chr15:89116521#chr17:2770329,reading-frame: in-frame,type: translocation,split_reads1: 23,split_reads2: 30,discordant_mates: 0,coverage1: 7373,coverage2: 161,confidence: high | position: chr15:89116521:+#chr17:2770329:+,junction_reads: 55,spanning_reads: 0,ffmp: 0.2272 |
| MCTP2--AC087633.2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:94315637#chr15:95021044,reading-frame: out-of-frame,type: deletion,split_reads1: 17,split_reads2: 8,discordant_mates: 0,coverage1: 249,coverage2: 11,confidence: high | position: chr15:94315637:+#chr15:95021044:+,junction_reads: 31,spanning_reads: 0,ffmp: 0.1281 | |
| DAB1--MYSM1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:58506060#chr1:58695207,reading-frame: .,type: duplication,split_reads1: 7,split_reads2: 15,discordant_mates: 0,coverage1: 556,coverage2: 232,confidence: high | position: chr1:58506060:-#chr1:58695207:-,junction_reads: 22,spanning_reads: 0,ffmp: 0.0909 | |
| TLK2P1--AC110079.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:34039043#chr4:118595912,reading-frame: .,type: translocation,split_reads1: 14,split_reads2: 2,discordant_mates: 0,coverage1: 458,coverage2: 578,confidence: high | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 20,spanning_reads: 0,ffmp: 0.0768 | |
| VPS13C--LINC02694 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:62041324:-#chr15:38688894:+,junction_reads: 14,spanning_reads: 0,ffmp: 0.0578 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0091 | ||
| RTN4--MTIF2 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr2:55049745:-#chr2:55237428:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0454 | |
| RTN4--CLHC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:55049745:-#chr2:55212806:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.033 | ||
| NCOR1--AC005703.4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:16098367#chr17:15354422,reading-frame: out-of-frame,type: deletion,split_reads1: 68,split_reads2: 31,discordant_mates: 0,coverage1: 2640,coverage2: 39,confidence: high | ||
| PCDHA4--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 9,discordant_mates: 0,coverage1: 256,coverage2: 646,confidence: high | ||
| PCDHA4--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 9,discordant_mates: 0,coverage1: 256,coverage2: 646,confidence: high | ||
| CLUH--SNTG1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:2711562#chr8:50055998,reading-frame: out-of-frame,type: translocation,split_reads1: 19,split_reads2: 7,discordant_mates: 0,coverage1: 501,coverage2: 17,confidence: high | ||
| PCDHA4--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 9,discordant_mates: 0,coverage1: 256,coverage2: 646,confidence: high | ||
| PCDHA10--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 4,split_reads2: 18,discordant_mates: 0,coverage1: 284,coverage2: 646,confidence: high | ||
| PCDHA10--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 4,split_reads2: 18,discordant_mates: 0,coverage1: 284,coverage2: 646,confidence: high | ||
| PCDHA10--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 4,split_reads2: 18,discordant_mates: 0,coverage1: 284,coverage2: 646,confidence: high | ||
| OMA1--MYSM1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:58506060#chr1:58695207,reading-frame: .,type: duplication,split_reads1: 7,split_reads2: 15,discordant_mates: 0,coverage1: 556,coverage2: 232,confidence: high | ||
| ERBB4--PID1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:211750639#chr2:229000286,reading-frame: out-of-frame,type: inversion/5'-5',split_reads1: 7,split_reads2: 5,discordant_mates: 0,coverage1: 4242,coverage2: 22,confidence: high |
22 rows