AIH curated blacklist: matched 16 fusion rows (breakpoint_ID in qualified set)
================================================================================
ARRIBA FILTERING SUMMARY
================================================================================
Total fusions: 430
Pass (FILTER=PASS): 62 (14.4%)
Fail (FILTER=FAIL): 368 (85.6%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 16
All 16 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 76
confidence_below_min(medium<high): 63
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 32
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 30
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 22
confidence_below_min(low<high): 21
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 16
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 15
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 15
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 12
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 11
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 10
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 7
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 5
Breakdown by confidence:
high: 62 pass, 5 fail (total: 67)
low: 0 pass, 195 fail (total: 195)
medium: 0 pass, 168 fail (total: 168)
Arriba filter: 430 rows -> 62 PASS; wrote FFPE_HD789_01_RNA_13_A23YTGFLT4_1.arriba.fusions.filtered.tsv and FFPE_HD789_01_RNA_13_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: FFPE_HD789_01_RNA_13_A23YTGFLT4_1.arriba.fusions.filter_summary.txt