Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/384ebd2c5b5c5e72a92dec70344bff/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/d59a3f01e0fcb7f52b2f28645963c2/fi_workdir/aih-tih-sc-b6fd19-R1_A23YTGFLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/384ebd2c5b5c5e72a92dec70344bff/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 31382
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 31382
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:31382
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 6 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC011487.2--ANKRD27 HAVANA gene 13218 42291 . + . FI_gene_label "ANKRD27^ENSG00000105186.16" ; ID "AC011487.2--ANKRD27^ANKRD27^ENSG00000105186.16" ; ccdsid "CCDS32986.1" ; exon_id "ENSE00003704310.1" ; exon_number 2 ; gene_id "AC011487.2--ANKRD27^ANKRD27^ENSG00000105186.16" ; gene_name ANKRD27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180225.10" ; havana_transcript "OTTHUMT00000450329.2" ; hgnc_id "HGNC:25310" ; level 2 ; orig_coord_info "chr19,32658914,32659015,-" ; protein_id "ENSP00000304292.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC011487.2--ANKRD27^ENST00000306065.9" ; transcript_name "ANKRD27-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC011487.2--ANKRD27 HAVANA mRNA 13218 42291 . + . FI_gene_label "ANKRD27^ENSG00000105186.16" ; ID "AC011487.2--ANKRD27^ENST00000306065.9" ; Parent "AC011487.2--ANKRD27^ANKRD27^ENSG00000105186.16" ; ccdsid "CCDS32986.1" ; exon_id "ENSE00003704310.1" ; exon_number 2 ; gene_id "AC011487.2--ANKRD27^ANKRD27^ENSG00000105186.16" ; gene_name ANKRD27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180225.10" ; havana_transcript "OTTHUMT00000450329.2" ; hgnc_id "HGNC:25310" ; level 2 ; orig_coord_info "chr19,32658914,32659015,-" ; protein_id "ENSP00000304292.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC011487.2--ANKRD27^ENST00000306065.9" ; transcript_name "ANKRD27-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC015911.2--AP2B1 HAVANA gene 22546 25451 . + . FI_gene_label "AP2B1^ENSG00000006125.18" ; ID "AC015911.2--AP2B1^AP2B1^ENSG00000006125.18" ; exon_id "ENSE00002814630.1" ; exon_number 1 ; gene_id "AC015911.2--AP2B1^AP2B1^ENSG00000006125.18" ; gene_name AP2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179924.5" ; havana_transcript "OTTHUMT00000448985.1" ; hgnc_id "HGNC:563" ; level 1 ; orig_coord_info "chr17,35650650,35650789,+" ; protein_id "ENSP00000466580.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "AC015911.2--AP2B1^ENST00000587805.1" ; transcript_name "AP2B1-201" ; transcript_support_level 2 ; transcript_type protein_coding
AC015911.2--AP2B1 HAVANA mRNA 22546 25451 . + . FI_gene_label "AP2B1^ENSG00000006125.18" ; ID "AC015911.2--AP2B1^ENST00000587805.1" ; Parent "AC015911.2--AP2B1^AP2B1^ENSG00000006125.18" ; exon_id "ENSE00002814630.1" ; exon_number 1 ; gene_id "AC015911.2--AP2B1^AP2B1^ENSG00000006125.18" ; gene_name AP2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179924.5" ; havana_transcript "OTTHUMT00000448985.1" ; hgnc_id "HGNC:563" ; level 1 ; orig_coord_info "chr17,35650650,35650789,+" ; protein_id "ENSP00000466580.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "AC015911.2--AP2B1^ENST00000587805.1" ; transcript_name "AP2B1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--AP2B1 HAVANA gene 22478 25383 . + . FI_gene_label "AP2B1^ENSG00000006125.18" ; ID "AC015911.9--AP2B1^AP2B1^ENSG00000006125.18" ; exon_id "ENSE00002814630.1" ; exon_number 1 ; gene_id "AC015911.9--AP2B1^AP2B1^ENSG00000006125.18" ; gene_name AP2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179924.5" ; havana_transcript "OTTHUMT00000448985.1" ; hgnc_id "HGNC:563" ; level 1 ; orig_coord_info "chr17,35650650,35650789,+" ; protein_id "ENSP00000466580.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "AC015911.9--AP2B1^ENST00000587805.1" ; transcript_name "AP2B1-201" ; transcript_support_level 2 ; transcript_type protein_coding
AC015911.9--AP2B1 HAVANA mRNA 22478 25383 . + . FI_gene_label "AP2B1^ENSG00000006125.18" ; ID "AC015911.9--AP2B1^ENST00000587805.1" ; Parent "AC015911.9--AP2B1^AP2B1^ENSG00000006125.18" ; exon_id "ENSE00002814630.1" ; exon_number 1 ; gene_id "AC015911.9--AP2B1^AP2B1^ENSG00000006125.18" ; gene_name AP2B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179924.5" ; havana_transcript "OTTHUMT00000448985.1" ; hgnc_id "HGNC:563" ; level 1 ; orig_coord_info "chr17,35650650,35650789,+" ; protein_id "ENSP00000466580.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "AC015911.9--AP2B1^ENST00000587805.1" ; transcript_name "AP2B1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC060780.1--ANKS1A HAVANA gene 16125 43853 . + . FI_gene_label "ANKS1A^ENSG00000064999.15" ; ID "AC060780.1--ANKS1A^ANKS1A^ENSG00000064999.15" ; ccdsid "CCDS4798.1" ; exon_id "ENSE00003847126.1" ; exon_number 1 ; gene_id "AC060780.1--ANKS1A^ANKS1A^ENSG00000064999.15" ; gene_name ANKS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014559.4" ; havana_transcript "OTTHUMT00000040262.3" ; hgnc_id "HGNC:20961" ; level 2 ; orig_coord_info "chr6,34889403,34889599,+" ; protein_id "ENSP00000353518.3" ; tag basic MANE_Select CCDS ; transcript_id "AC060780.1--ANKS1A^ENST00000360359.5" ; transcript_name "ANKS1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC060780.1--ANKS1A HAVANA mRNA 16125 43853 . + . FI_gene_label "ANKS1A^ENSG00000064999.15" ; ID "AC060780.1--ANKS1A^ENST00000360359.5" ; Parent "AC060780.1--ANKS1A^ANKS1A^ENSG00000064999.15" ; ccdsid "CCDS4798.1" ; exon_id "ENSE00003847126.1" ; exon_number 1 ; gene_id "AC060780.1--ANKS1A^ANKS1A^ENSG00000064999.15" ; gene_name ANKS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014559.4" ; havana_transcript "OTTHUMT00000040262.3" ; hgnc_id "HGNC:20961" ; level 2 ; orig_coord_info "chr6,34889403,34889599,+" ; protein_id "ENSP00000353518.3" ; tag basic MANE_Select CCDS ; transcript_id "AC060780.1--ANKS1A^ENST00000360359.5" ; transcript_name "ANKS1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC084756.2--NF1P1 HAVANA gene 1001 4390 . + . FI_gene_label "AC084756.2^ENSG00000288645.1" ; ID "AC084756.2--NF1P1^AC084756.2^ENSG00000288645.1" ; exon_id "ENSE00003903411.1" ; exon_number 1 ; gene_id "AC084756.2--NF1P1^AC084756.2^ENSG00000288645.1" ; gene_name "AC084756.2" ; gene_type protein_coding ; level 2 ; orig_coord_info "chr15,50686531,50686717,-" ; protein_id "ENSP00000502268.1" ; tag basic appris_principal_1 ; transcript_id "AC084756.2--NF1P1^ENST00000676296.1" ; transcript_name "AC084756.2-201" ; transcript_type protein_coding
AC084756.2--NF1P1 HAVANA mRNA 1001 4390 . + . FI_gene_label "AC084756.2^ENSG00000288645.1" ; ID "AC084756.2--NF1P1^ENST00000676296.1" ; Parent "AC084756.2--NF1P1^AC084756.2^ENSG00000288645.1" ; exon_id "ENSE00003903411.1" ; exon_number 1 ; gene_id "AC084756.2--NF1P1^AC084756.2^ENSG00000288645.1" ; gene_name "AC084756.2" ; gene_type protein_coding ; level 2 ; orig_coord_info "chr15,50686531,50686717,-" ; protein_id "ENSP00000502268.1" ; tag basic appris_principal_1 ; transcript_id "AC084756.2--NF1P1^ENST00000676296.1" ; transcript_name "AC084756.2-201" ; transcript_type protein_coding
L1 and L2 created:
ACACA--MMP28 HAVANA gene 78015 86239 . + . FI_gene_label "MMP28^ENSG00000271447.6" ; ID "ACACA--MMP28^MMP28^ENSG00000271447.6" ; ccdsid "CCDS74036.1" ; exon_id "ENSE00003726135.2" ; exon_number 1 ; gene_id "ACACA--MMP28^MMP28^ENSG00000271447.6" ; gene_name MMP28 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188387.3" ; havana_transcript "OTTHUMT00000477064.2" ; hgnc_id "HGNC:14366" ; level 2 ; orig_coord_info "chr17,35795267,35795377,-" ; protein_id "ENSP00000473853.1" ; tag alternative_3_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACACA--MMP28^ENST00000605424.6" ; transcript_name "MMP28-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACACA--MMP28 HAVANA mRNA 78015 86239 . + . FI_gene_label "MMP28^ENSG00000271447.6" ; ID "ACACA--MMP28^ENST00000605424.6" ; Parent "ACACA--MMP28^MMP28^ENSG00000271447.6" ; ccdsid "CCDS74036.1" ; exon_id "ENSE00003726135.2" ; exon_number 1 ; gene_id "ACACA--MMP28^MMP28^ENSG00000271447.6" ; gene_name MMP28 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188387.3" ; havana_transcript "OTTHUMT00000477064.2" ; hgnc_id "HGNC:14366" ; level 2 ; orig_coord_info "chr17,35795267,35795377,-" ; protein_id "ENSP00000473853.1" ; tag alternative_3_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACACA--MMP28^ENST00000605424.6" ; transcript_name "MMP28-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACACA--MMP28 HAVANA gene 6303 13193 . + . FI_gene_label "ACACA^ENSG00000278540.5" ; ID "ACACA--MMP28^ACACA^ENSG00000278540.5" ; exon_id "ENSE00003745454.1" ; exon_number 3 ; gene_id "ACACA--MMP28^ACACA^ENSG00000278540.5" ; gene_name ACACA ; gene_type protein_coding ; havana_gene "OTTHUMG00000188463.3" ; havana_transcript "OTTHUMT00000477332.2" ; hgnc_id "HGNC:84" ; level 2 ; orig_coord_info "chr17,37330173,37330399,-" ; protein_id "ENSP00000484948.1" ; transcript_id "ACACA--MMP28^ENST00000612007.1" ; transcript_name "ACACA-224" ; transcript_support_level 5 ; transcript_type non_stop_decay
ACACA--MMP28 HAVANA mRNA 6303 13193 . + . FI_gene_label "ACACA^ENSG00000278540.5" ; ID "ACACA--MMP28^ENST00000612007.1" ; Parent "ACACA--MMP28^ACACA^ENSG00000278540.5" ; exon_id "ENSE00003745454.1" ; exon_number 3 ; gene_id "ACACA--MMP28^ACACA^ENSG00000278540.5" ; gene_name ACACA ; gene_type protein_coding ; havana_gene "OTTHUMG00000188463.3" ; havana_transcript "OTTHUMT00000477332.2" ; hgnc_id "HGNC:84" ; level 2 ; orig_coord_info "chr17,37330173,37330399,-" ; protein_id "ENSP00000484948.1" ; transcript_id "ACACA--MMP28^ENST00000612007.1" ; transcript_name "ACACA-224" ; transcript_support_level 5 ; transcript_type non_stop_decay
L1 and L2 created:
ACACA--SLFN12 HAVANA gene 78732 86139 . + . FI_gene_label "SLFN12^ENSG00000172123.13" ; ID "ACACA--SLFN12^SLFN12^ENSG00000172123.13" ; ccdsid "CCDS11295.1" ; exon_id "ENSE00001160241.4" ; exon_number 2 ; gene_id "ACACA--SLFN12^SLFN12^ENSG00000172123.13" ; gene_name SLFN12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132952.3" ; havana_transcript "OTTHUMT00000256490.1" ; hgnc_id "HGNC:25500" ; level 2 ; orig_coord_info "chr17,35421990,35423028,-" ; protein_id "ENSP00000302077.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACACA--SLFN12^ENST00000304905.10" ; transcript_name "SLFN12-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACACA--SLFN12 HAVANA mRNA 78732 86139 . + . FI_gene_label "SLFN12^ENSG00000172123.13" ; ID "ACACA--SLFN12^ENST00000304905.10" ; Parent "ACACA--SLFN12^SLFN12^ENSG00000172123.13" ; ccdsid "CCDS11295.1" ; exon_id "ENSE00001160241.4" ; exon_number 2 ; gene_id "ACACA--SLFN12^SLFN12^ENSG00000172123.13" ; gene_name SLFN12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132952.3" ; havana_transcript "OTTHUMT00000256490.1" ; hgnc_id "HGNC:25500" ; level 2 ; orig_coord_info "chr17,35421990,35423028,-" ; protein_id "ENSP00000302077.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACACA--SLFN12^ENST00000304905.10" ; transcript_name "SLFN12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACACA--SLFN12 HAVANA gene 6303 13193 . + . FI_gene_label "ACACA^ENSG00000278540.5" ; ID "ACACA--SLFN12^ACACA^ENSG00000278540.5" ; exon_id "ENSE00003745454.1" ; exon_number 3 ; gene_id "ACACA--SLFN12^ACACA^ENSG00000278540.5" ; gene_name ACACA ; gene_type protein_coding ; havana_gene "OTTHUMG00000188463.3" ; havana_transcript "OTTHUMT00000477332.2" ; hgnc_id "HGNC:84" ; level 2 ; orig_coord_info "chr17,37330173,37330399,-" ; protein_id "ENSP00000484948.1" ; transcript_id "ACACA--SLFN12^ENST00000612007.1" ; transcript_name "ACACA-224" ; transcript_support_level 5 ; transcript_type non_stop_decay
ACACA--SLFN12 HAVANA mRNA 6303 13193 . + . FI_gene_label "ACACA^ENSG00000278540.5" ; ID "ACACA--SLFN12^ENST00000612007.1" ; Parent "ACACA--SLFN12^ACACA^ENSG00000278540.5" ; exon_id "ENSE00003745454.1" ; exon_number 3 ; gene_id "ACACA--SLFN12^ACACA^ENSG00000278540.5" ; gene_name ACACA ; gene_type protein_coding ; havana_gene "OTTHUMG00000188463.3" ; havana_transcript "OTTHUMT00000477332.2" ; hgnc_id "HGNC:84" ; level 2 ; orig_coord_info "chr17,37330173,37330399,-" ; protein_id "ENSP00000484948.1" ; transcript_id "ACACA--SLFN12^ENST00000612007.1" ; transcript_name "ACACA-224" ; transcript_support_level 5 ; transcript_type non_stop_decay
L1 and L2 created:
ACSF3--BOC HAVANA gene 37974 60269 . + . FI_gene_label "BOC^ENSG00000144857.14" ; ID "ACSF3--BOC^BOC^ENSG00000144857.14" ; ccdsid "CCDS77788.1" ; exon_id "ENSE00003800819.1" ; exon_number 3 ; gene_id "ACSF3--BOC^BOC^ENSG00000144857.14" ; gene_name BOC ; gene_type protein_coding ; havana_gene "OTTHUMG00000159305.22" ; havana_transcript "OTTHUMT00000354487.2" ; hgnc_id "HGNC:17173" ; level 2 ; orig_coord_info "chr3,113249803,113249899,+" ; protein_id "ENSP00000273395.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "ACSF3--BOC^ENST00000273395.8" ; transcript_name "BOC-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACSF3--BOC HAVANA mRNA 37974 60269 . + . FI_gene_label "BOC^ENSG00000144857.14" ; ID "ACSF3--BOC^ENST00000273395.8" ; Parent "ACSF3--BOC^BOC^ENSG00000144857.14" ; ccdsid "CCDS77788.1" ; exon_id "ENSE00003800819.1" ; exon_number 3 ; gene_id "ACSF3--BOC^BOC^ENSG00000144857.14" ; gene_name BOC ; gene_type protein_coding ; havana_gene "OTTHUMG00000159305.22" ; havana_transcript "OTTHUMT00000354487.2" ; hgnc_id "HGNC:17173" ; level 2 ; orig_coord_info "chr3,113249803,113249899,+" ; protein_id "ENSP00000273395.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "ACSF3--BOC^ENST00000273395.8" ; transcript_name "BOC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACSF3--BOC HAVANA gene 2105 29056 . + . FI_gene_label "ACSF3^ENSG00000176715.17" ; ID "ACSF3--BOC^ACSF3^ENSG00000176715.17" ; ccdsid "CCDS10974.1" ; exon_id "ENSE00001311992.3" ; exon_number 3 ; gene_id "ACSF3--BOC^ACSF3^ENSG00000176715.17" ; gene_name ACSF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138044.16" ; havana_transcript "OTTHUMT00000269919.3" ; hgnc_id "HGNC:27288" ; level 2 ; orig_coord_info "chr16,89100682,89101347,+" ; protein_id "ENSP00000320646.4" ; tag basic appris_principal_1 CCDS ; transcript_id "ACSF3--BOC^ENST00000317447.9" ; transcript_name "ACSF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
ACSF3--BOC HAVANA mRNA 2105 29056 . + . FI_gene_label "ACSF3^ENSG00000176715.17" ; ID "ACSF3--BOC^ENST00000317447.9" ; Parent "ACSF3--BOC^ACSF3^ENSG00000176715.17" ; ccdsid "CCDS10974.1" ; exon_id "ENSE00001311992.3" ; exon_number 3 ; gene_id "ACSF3--BOC^ACSF3^ENSG00000176715.17" ; gene_name ACSF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138044.16" ; havana_transcript "OTTHUMT00000269919.3" ; hgnc_id "HGNC:27288" ; level 2 ; orig_coord_info "chr16,89100682,89101347,+" ; protein_id "ENSP00000320646.4" ; tag basic appris_principal_1 CCDS ; transcript_id "ACSF3--BOC^ENST00000317447.9" ; transcript_name "ACSF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ADGRF1--TNFRSF21 ENSEMBL gene 10127 22869 . + . FI_gene_label "ADGRF1^ENSG00000153292.16" ; ID "ADGRF1--TNFRSF21^ADGRF1^ENSG00000153292.16" ; exon_id "ENSE00002279638.1" ; exon_number 1 ; gene_id "ADGRF1--TNFRSF21^ADGRF1^ENSG00000153292.16" ; gene_name ADGRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014795.3" ; hgnc_id "HGNC:18990" ; level 3 ; orig_coord_info "chr6,47018480,47018499,-" ; protein_id "ENSP00000283297.5" ; tag basic ; transcript_id "ADGRF1--TNFRSF21^ENST00000283297.5" ; transcript_name "ADGRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADGRF1--TNFRSF21 ENSEMBL mRNA 10127 22869 . + . FI_gene_label "ADGRF1^ENSG00000153292.16" ; ID "ADGRF1--TNFRSF21^ENST00000283297.5" ; Parent "ADGRF1--TNFRSF21^ADGRF1^ENSG00000153292.16" ; exon_id "ENSE00002279638.1" ; exon_number 1 ; gene_id "ADGRF1--TNFRSF21^ADGRF1^ENSG00000153292.16" ; gene_name ADGRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014795.3" ; hgnc_id "HGNC:18990" ; level 3 ; orig_coord_info "chr6,47018480,47018499,-" ; protein_id "ENSP00000283297.5" ; tag basic ; transcript_id "ADGRF1--TNFRSF21^ENST00000283297.5" ; transcript_name "ADGRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADGRF1--TNFRSF21 HAVANA gene 28384 36978 . + . FI_gene_label "TNFRSF21^ENSG00000146072.6" ; ID "ADGRF1--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; ccdsid "CCDS4921.1" ; exon_id "ENSE00001226615.2" ; exon_number 1 ; gene_id "ADGRF1--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; gene_name TNFRSF21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014796.1" ; havana_transcript "OTTHUMT00000040814.1" ; hgnc_id "HGNC:13469" ; level 2 ; orig_coord_info "chr6,47309416,47309511,-" ; protein_id "ENSP00000296861.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADGRF1--TNFRSF21^ENST00000296861.2" ; transcript_name "TNFRSF21-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADGRF1--TNFRSF21 HAVANA mRNA 28384 36978 . + . FI_gene_label "TNFRSF21^ENSG00000146072.6" ; ID "ADGRF1--TNFRSF21^ENST00000296861.2" ; Parent "ADGRF1--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; ccdsid "CCDS4921.1" ; exon_id "ENSE00001226615.2" ; exon_number 1 ; gene_id "ADGRF1--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; gene_name TNFRSF21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014796.1" ; havana_transcript "OTTHUMT00000040814.1" ; hgnc_id "HGNC:13469" ; level 2 ; orig_coord_info "chr6,47309416,47309511,-" ; protein_id "ENSP00000296861.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADGRF1--TNFRSF21^ENST00000296861.2" ; transcript_name "TNFRSF21-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKAP8--BRD4 HAVANA gene 21974 50668 . + . FI_gene_label "BRD4^ENSG00000141867.19" ; ID "AKAP8--BRD4^BRD4^ENSG00000141867.19" ; ccdsid "CCDS12328.1" ; exon_id "ENSE00001113202.1" ; exon_number 2 ; gene_id "AKAP8--BRD4^BRD4^ENSG00000141867.19" ; gene_name BRD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183252.8" ; havana_transcript "OTTHUMT00000465800.4" ; hgnc_id "HGNC:13575" ; level 2 ; orig_coord_info "chr19,15272815,15273099,-" ; protein_id "ENSP00000263377.1" ; tag overlapping_uORF basic appris_principal_1 CCDS ; transcript_id "AKAP8--BRD4^ENST00000263377.6" ; transcript_name "BRD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKAP8--BRD4 HAVANA mRNA 21974 50668 . + . FI_gene_label "BRD4^ENSG00000141867.19" ; ID "AKAP8--BRD4^ENST00000263377.6" ; Parent "AKAP8--BRD4^BRD4^ENSG00000141867.19" ; ccdsid "CCDS12328.1" ; exon_id "ENSE00001113202.1" ; exon_number 2 ; gene_id "AKAP8--BRD4^BRD4^ENSG00000141867.19" ; gene_name BRD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183252.8" ; havana_transcript "OTTHUMT00000465800.4" ; hgnc_id "HGNC:13575" ; level 2 ; orig_coord_info "chr19,15272815,15273099,-" ; protein_id "ENSP00000263377.1" ; tag overlapping_uORF basic appris_principal_1 CCDS ; transcript_id "AKAP8--BRD4^ENST00000263377.6" ; transcript_name "BRD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKAP8--BRD4 HAVANA gene 1029 17263 . + . FI_gene_label "AKAP8^ENSG00000105127.10" ; ID "AKAP8--BRD4^AKAP8^ENSG00000105127.10" ; ccdsid "CCDS12329.1" ; exon_id "ENSE00001273547.2" ; exon_number 1 ; gene_id "AKAP8--BRD4^AKAP8^ENSG00000105127.10" ; gene_name AKAP8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182444.5" ; havana_transcript "OTTHUMT00000461293.4" ; hgnc_id "HGNC:378" ; level 2 ; orig_coord_info "chr19,15379713,15379731,-" ; protein_id "ENSP00000269701.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "AKAP8--BRD4^ENST00000269701.7" ; transcript_name "AKAP8-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKAP8--BRD4 HAVANA mRNA 1029 17263 . + . FI_gene_label "AKAP8^ENSG00000105127.10" ; ID "AKAP8--BRD4^ENST00000269701.7" ; Parent "AKAP8--BRD4^AKAP8^ENSG00000105127.10" ; ccdsid "CCDS12329.1" ; exon_id "ENSE00001273547.2" ; exon_number 1 ; gene_id "AKAP8--BRD4^AKAP8^ENSG00000105127.10" ; gene_name AKAP8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182444.5" ; havana_transcript "OTTHUMT00000461293.4" ; hgnc_id "HGNC:378" ; level 2 ; orig_coord_info "chr19,15379713,15379731,-" ; protein_id "ENSP00000269701.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "AKAP8--BRD4^ENST00000269701.7" ; transcript_name "AKAP8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASAP1--CYRIB ENSEMBL gene 1015 44661 . + . FI_gene_label "ASAP1^ENSG00000153317.15" ; ID "ASAP1--CYRIB^ASAP1^ENSG00000153317.15" ; ccdsid "CCDS75788.1" ; exon_id "ENSE00003501495.1" ; exon_number 3 ; gene_id "ASAP1--CYRIB^ASAP1^ENSG00000153317.15" ; gene_name ASAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164772.4" ; hgnc_id "HGNC:2720" ; level 3 ; orig_coord_info "chr8,130361670,130361707,-" ; protein_id "ENSP00000350297.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "ASAP1--CYRIB^ENST00000357668.2" ; transcript_name "ASAP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
ASAP1--CYRIB ENSEMBL mRNA 1015 44661 . + . FI_gene_label "ASAP1^ENSG00000153317.15" ; ID "ASAP1--CYRIB^ENST00000357668.2" ; Parent "ASAP1--CYRIB^ASAP1^ENSG00000153317.15" ; ccdsid "CCDS75788.1" ; exon_id "ENSE00003501495.1" ; exon_number 3 ; gene_id "ASAP1--CYRIB^ASAP1^ENSG00000153317.15" ; gene_name ASAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164772.4" ; hgnc_id "HGNC:2720" ; level 3 ; orig_coord_info "chr8,130361670,130361707,-" ; protein_id "ENSP00000350297.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "ASAP1--CYRIB^ENST00000357668.2" ; transcript_name "ASAP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ASAP1--CYRIB HAVANA gene 48343 72002 . + . FI_gene_label "CYRIB^ENSG00000153310.19" ; ID "ASAP1--CYRIB^CYRIB^ENSG00000153310.19" ; ccdsid "CCDS6361.1" ; exon_id "ENSE00003596463.1" ; exon_number 6 ; gene_id "ASAP1--CYRIB^CYRIB^ENSG00000153310.19" ; gene_name CYRIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000164805.4" ; havana_transcript "OTTHUMT00000380386.1" ; hgnc_id "HGNC:25216" ; level 2 ; orig_coord_info "chr8,129879389,129879461,-" ; protein_id "ENSP00000384880.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "ASAP1--CYRIB^ENST00000401979.6" ; transcript_name "CYRIB-201" ; transcript_support_level 2 ; transcript_type protein_coding
ASAP1--CYRIB HAVANA mRNA 48343 72002 . + . FI_gene_label "CYRIB^ENSG00000153310.19" ; ID "ASAP1--CYRIB^ENST00000401979.6" ; Parent "ASAP1--CYRIB^CYRIB^ENSG00000153310.19" ; ccdsid "CCDS6361.1" ; exon_id "ENSE00003596463.1" ; exon_number 6 ; gene_id "ASAP1--CYRIB^CYRIB^ENSG00000153310.19" ; gene_name CYRIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000164805.4" ; havana_transcript "OTTHUMT00000380386.1" ; hgnc_id "HGNC:25216" ; level 2 ; orig_coord_info "chr8,129879389,129879461,-" ; protein_id "ENSP00000384880.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "ASAP1--CYRIB^ENST00000401979.6" ; transcript_name "CYRIB-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ATG16L2--DLG2 HAVANA gene 39678 81995 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "ATG16L2--DLG2^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "ATG16L2--DLG2^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "ATG16L2--DLG2^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
ATG16L2--DLG2 HAVANA mRNA 39678 81995 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "ATG16L2--DLG2^ENST00000280241.12" ; Parent "ATG16L2--DLG2^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "ATG16L2--DLG2^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "ATG16L2--DLG2^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ATG16L2--DLG2 HAVANA gene 1006 15721 . + . FI_gene_label "ATG16L2^ENSG00000168010.11" ; ID "ATG16L2--DLG2^ATG16L2^ENSG00000168010.11" ; ccdsid "CCDS31634.1" ; exon_id "ENSE00002313954.2" ; exon_number 1 ; gene_id "ATG16L2--DLG2^ATG16L2^ENSG00000168010.11" ; gene_name ATG16L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167961.3" ; havana_transcript "OTTHUMT00000397305.2" ; hgnc_id "HGNC:25464" ; level 2 ; orig_coord_info "chr11,72814446,72814563,+" ; protein_id "ENSP00000326340.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATG16L2--DLG2^ENST00000321297.10" ; transcript_name "ATG16L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATG16L2--DLG2 HAVANA mRNA 1006 15721 . + . FI_gene_label "ATG16L2^ENSG00000168010.11" ; ID "ATG16L2--DLG2^ENST00000321297.10" ; Parent "ATG16L2--DLG2^ATG16L2^ENSG00000168010.11" ; ccdsid "CCDS31634.1" ; exon_id "ENSE00002313954.2" ; exon_number 1 ; gene_id "ATG16L2--DLG2^ATG16L2^ENSG00000168010.11" ; gene_name ATG16L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167961.3" ; havana_transcript "OTTHUMT00000397305.2" ; hgnc_id "HGNC:25464" ; level 2 ; orig_coord_info "chr11,72814446,72814563,+" ; protein_id "ENSP00000326340.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATG16L2--DLG2^ENST00000321297.10" ; transcript_name "ATG16L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BRAP--ATXN2 HAVANA gene 1237 14081 . + . FI_gene_label "BRAP^ENSG00000089234.16" ; ID "BRAP--ATXN2^BRAP^ENSG00000089234.16" ; exon_id "ENSE00003515297.1" ; exon_number 2 ; gene_id "BRAP--ATXN2^BRAP^ENSG00000089234.16" ; gene_name BRAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000169600.5" ; havana_transcript "OTTHUMT00000404994.2" ; hgnc_id "HGNC:1099" ; level 1 ; orig_coord_info "chr12,111683146,111683299,-" ; protein_id "ENSP00000330813.5" ; tag basic exp_conf ; transcript_id "BRAP--ATXN2^ENST00000327551.6" ; transcript_name "BRAP-201" ; transcript_support_level 1 ; transcript_type protein_coding
BRAP--ATXN2 HAVANA mRNA 1237 14081 . + . FI_gene_label "BRAP^ENSG00000089234.16" ; ID "BRAP--ATXN2^ENST00000327551.6" ; Parent "BRAP--ATXN2^BRAP^ENSG00000089234.16" ; exon_id "ENSE00003515297.1" ; exon_number 2 ; gene_id "BRAP--ATXN2^BRAP^ENSG00000089234.16" ; gene_name BRAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000169600.5" ; havana_transcript "OTTHUMT00000404994.2" ; hgnc_id "HGNC:1099" ; level 1 ; orig_coord_info "chr12,111683146,111683299,-" ; protein_id "ENSP00000330813.5" ; tag basic exp_conf ; transcript_id "BRAP--ATXN2^ENST00000327551.6" ; transcript_name "BRAP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BRAP--ATXN2 HAVANA gene 19572 55510 . + . FI_gene_label "ATXN2^ENSG00000204842.18" ; ID "BRAP--ATXN2^ATXN2^ENSG00000204842.18" ; exon_id "ENSE00003823278.1" ; exon_number 1 ; gene_id "BRAP--ATXN2^ATXN2^ENSG00000204842.18" ; gene_name ATXN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133475.13" ; havana_transcript "OTTHUMT00000257359.6" ; hgnc_id "HGNC:10555" ; level 2 ; orig_coord_info "chr12,111598784,111599034,-" ; protein_id "ENSP00000373805.6" ; tag RNA_Seq_supported_partial basic appris_alternative_2 ; transcript_id "BRAP--ATXN2^ENST00000389153.10" ; transcript_name "ATXN2-201" ; transcript_support_level 5 ; transcript_type protein_coding
BRAP--ATXN2 HAVANA mRNA 19572 55510 . + . FI_gene_label "ATXN2^ENSG00000204842.18" ; ID "BRAP--ATXN2^ENST00000389153.10" ; Parent "BRAP--ATXN2^ATXN2^ENSG00000204842.18" ; exon_id "ENSE00003823278.1" ; exon_number 1 ; gene_id "BRAP--ATXN2^ATXN2^ENSG00000204842.18" ; gene_name ATXN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133475.13" ; havana_transcript "OTTHUMT00000257359.6" ; hgnc_id "HGNC:10555" ; level 2 ; orig_coord_info "chr12,111598784,111599034,-" ; protein_id "ENSP00000373805.6" ; tag RNA_Seq_supported_partial basic appris_alternative_2 ; transcript_id "BRAP--ATXN2^ENST00000389153.10" ; transcript_name "ATXN2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CAMKK2--KDM2B HAVANA gene 1001 24395 . + . FI_gene_label "CAMKK2^ENSG00000110931.19" ; ID "CAMKK2--KDM2B^CAMKK2^ENSG00000110931.19" ; ccdsid "CCDS9216.1" ; exon_id "ENSE00001805123.1" ; exon_number 2 ; gene_id "CAMKK2--KDM2B^CAMKK2^ENSG00000110931.19" ; gene_name CAMKK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169156.8" ; havana_transcript "OTTHUMT00000402563.1" ; hgnc_id "HGNC:1470" ; level 2 ; orig_coord_info "chr12,121274056,121274526,-" ; protein_id "ENSP00000312741.5" ; tag basic appris_principal_4 CCDS ; transcript_id "CAMKK2--KDM2B^ENST00000324774.9" ; transcript_name "CAMKK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CAMKK2--KDM2B HAVANA mRNA 1001 24395 . + . FI_gene_label "CAMKK2^ENSG00000110931.19" ; ID "CAMKK2--KDM2B^ENST00000324774.9" ; Parent "CAMKK2--KDM2B^CAMKK2^ENSG00000110931.19" ; ccdsid "CCDS9216.1" ; exon_id "ENSE00001805123.1" ; exon_number 2 ; gene_id "CAMKK2--KDM2B^CAMKK2^ENSG00000110931.19" ; gene_name CAMKK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169156.8" ; havana_transcript "OTTHUMT00000402563.1" ; hgnc_id "HGNC:1470" ; level 2 ; orig_coord_info "chr12,121274056,121274526,-" ; protein_id "ENSP00000312741.5" ; tag basic appris_principal_4 CCDS ; transcript_id "CAMKK2--KDM2B^ENST00000324774.9" ; transcript_name "CAMKK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CAMKK2--KDM2B HAVANA gene 27982 61289 . + . FI_gene_label "KDM2B^ENSG00000089094.19" ; ID "CAMKK2--KDM2B^KDM2B^ENSG00000089094.19" ; ccdsid "CCDS41849.1" ; exon_id "ENSE00001472690.1" ; exon_number 1 ; gene_id "CAMKK2--KDM2B^KDM2B^ENSG00000089094.19" ; gene_name KDM2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000169071.5" ; havana_transcript "OTTHUMT00000402131.2" ; hgnc_id "HGNC:13610" ; level 2 ; orig_coord_info "chr12,121580020,121580052,-" ; protein_id "ENSP00000366269.3" ; tag dotter_confirmed basic appris_alternative_2 CCDS ; transcript_id "CAMKK2--KDM2B^ENST00000377069.8" ; transcript_name "KDM2B-201" ; transcript_support_level 2 ; transcript_type protein_coding
CAMKK2--KDM2B HAVANA mRNA 27982 61289 . + . FI_gene_label "KDM2B^ENSG00000089094.19" ; ID "CAMKK2--KDM2B^ENST00000377069.8" ; Parent "CAMKK2--KDM2B^KDM2B^ENSG00000089094.19" ; ccdsid "CCDS41849.1" ; exon_id "ENSE00001472690.1" ; exon_number 1 ; gene_id "CAMKK2--KDM2B^KDM2B^ENSG00000089094.19" ; gene_name KDM2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000169071.5" ; havana_transcript "OTTHUMT00000402131.2" ; hgnc_id "HGNC:13610" ; level 2 ; orig_coord_info "chr12,121580020,121580052,-" ; protein_id "ENSP00000366269.3" ; tag dotter_confirmed basic appris_alternative_2 CCDS ; transcript_id "CAMKK2--KDM2B^ENST00000377069.8" ; transcript_name "KDM2B-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CASC22--TOX3 HAVANA gene 12592 26471 . + . FI_gene_label "TOX3^ENSG00000103460.17" ; ID "CASC22--TOX3^TOX3^ENSG00000103460.17" ; ccdsid "CCDS54009.1" ; exon_id "ENSE00002629852.2" ; exon_number 1 ; gene_id "CASC22--TOX3^TOX3^ENSG00000103460.17" ; gene_name TOX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000173222.5" ; havana_transcript "OTTHUMT00000422534.2" ; hgnc_id "HGNC:11972" ; level 2 ; orig_coord_info "chr16,52546637,52546723,-" ; protein_id "ENSP00000219746.9" ; tag not_organism_supported basic MANE_Select appris_principal_2 CCDS ; transcript_id "CASC22--TOX3^ENST00000219746.14" ; transcript_name "TOX3-201" ; transcript_support_level 2 ; transcript_type protein_coding
CASC22--TOX3 HAVANA mRNA 12592 26471 . + . FI_gene_label "TOX3^ENSG00000103460.17" ; ID "CASC22--TOX3^ENST00000219746.14" ; Parent "CASC22--TOX3^TOX3^ENSG00000103460.17" ; ccdsid "CCDS54009.1" ; exon_id "ENSE00002629852.2" ; exon_number 1 ; gene_id "CASC22--TOX3^TOX3^ENSG00000103460.17" ; gene_name TOX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000173222.5" ; havana_transcript "OTTHUMT00000422534.2" ; hgnc_id "HGNC:11972" ; level 2 ; orig_coord_info "chr16,52546637,52546723,-" ; protein_id "ENSP00000219746.9" ; tag not_organism_supported basic MANE_Select appris_principal_2 CCDS ; transcript_id "CASC22--TOX3^ENST00000219746.14" ; transcript_name "TOX3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CCDC6--SLC16A9 HAVANA gene 1001 16128 . + . FI_gene_label "CCDC6^ENSG00000108091.11" ; ID "CCDC6--SLC16A9^CCDC6^ENSG00000108091.11" ; ccdsid "CCDS7257.1" ; exon_id "ENSE00001950758.3" ; exon_number 1 ; gene_id "CCDC6--SLC16A9^CCDC6^ENSG00000108091.11" ; gene_name CCDC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018284.3" ; havana_transcript "OTTHUMT00000048176.3" ; hgnc_id "HGNC:18782" ; level 2 ; orig_coord_info "chr10,59906122,59906424,-" ; protein_id "ENSP00000263102.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCDC6--SLC16A9^ENST00000263102.7" ; transcript_name "CCDC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC6--SLC16A9 HAVANA mRNA 1001 16128 . + . FI_gene_label "CCDC6^ENSG00000108091.11" ; ID "CCDC6--SLC16A9^ENST00000263102.7" ; Parent "CCDC6--SLC16A9^CCDC6^ENSG00000108091.11" ; ccdsid "CCDS7257.1" ; exon_id "ENSE00001950758.3" ; exon_number 1 ; gene_id "CCDC6--SLC16A9^CCDC6^ENSG00000108091.11" ; gene_name CCDC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018284.3" ; havana_transcript "OTTHUMT00000048176.3" ; hgnc_id "HGNC:18782" ; level 2 ; orig_coord_info "chr10,59906122,59906424,-" ; protein_id "ENSP00000263102.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCDC6--SLC16A9^ENST00000263102.7" ; transcript_name "CCDC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC6--SLC16A9 HAVANA gene 19129 29743 . + . FI_gene_label "SLC16A9^ENSG00000165449.12" ; ID "CCDC6--SLC16A9^SLC16A9^ENSG00000165449.12" ; ccdsid "CCDS7256.1" ; exon_id "ENSE00001521427.1" ; exon_number 2 ; gene_id "CCDC6--SLC16A9^SLC16A9^ENSG00000165449.12" ; gene_name SLC16A9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018283.4" ; havana_transcript "OTTHUMT00000276891.2" ; hgnc_id "HGNC:23520" ; level 2 ; orig_coord_info "chr10,59684096,59684291,-" ; protein_id "ENSP00000378756.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CCDC6--SLC16A9^ENST00000395347.1" ; transcript_name "SLC16A9-201" ; transcript_support_level 2 ; transcript_type protein_coding
CCDC6--SLC16A9 HAVANA mRNA 19129 29743 . + . FI_gene_label "SLC16A9^ENSG00000165449.12" ; ID "CCDC6--SLC16A9^ENST00000395347.1" ; Parent "CCDC6--SLC16A9^SLC16A9^ENSG00000165449.12" ; ccdsid "CCDS7256.1" ; exon_id "ENSE00001521427.1" ; exon_number 2 ; gene_id "CCDC6--SLC16A9^SLC16A9^ENSG00000165449.12" ; gene_name SLC16A9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018283.4" ; havana_transcript "OTTHUMT00000276891.2" ; hgnc_id "HGNC:23520" ; level 2 ; orig_coord_info "chr10,59684096,59684291,-" ; protein_id "ENSP00000378756.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CCDC6--SLC16A9^ENST00000395347.1" ; transcript_name "SLC16A9-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CCS--NADSYN1 HAVANA gene 1089 5762 . + . FI_gene_label "CCS^ENSG00000173992.9" ; ID "CCS--NADSYN1^CCS^ENSG00000173992.9" ; exon_id "ENSE00002197662.1" ; exon_number 2 ; gene_id "CCS--NADSYN1^CCS^ENSG00000173992.9" ; gene_name CCS ; gene_type protein_coding ; havana_gene "OTTHUMG00000167238.3" ; havana_transcript "OTTHUMT00000393832.1" ; hgnc_id "HGNC:1613" ; level 2 ; orig_coord_info "chr11,66593660,66593714,+" ; protein_id "ENSP00000307870.4" ; tag not_organism_supported basic ; transcript_id "CCS--NADSYN1^ENST00000310190.8" ; transcript_name "CCS-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCS--NADSYN1 HAVANA mRNA 1089 5762 . + . FI_gene_label "CCS^ENSG00000173992.9" ; ID "CCS--NADSYN1^ENST00000310190.8" ; Parent "CCS--NADSYN1^CCS^ENSG00000173992.9" ; exon_id "ENSE00002197662.1" ; exon_number 2 ; gene_id "CCS--NADSYN1^CCS^ENSG00000173992.9" ; gene_name CCS ; gene_type protein_coding ; havana_gene "OTTHUMG00000167238.3" ; havana_transcript "OTTHUMT00000393832.1" ; hgnc_id "HGNC:1613" ; level 2 ; orig_coord_info "chr11,66593660,66593714,+" ; protein_id "ENSP00000307870.4" ; tag not_organism_supported basic ; transcript_id "CCS--NADSYN1^ENST00000310190.8" ; transcript_name "CCS-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCS--NADSYN1 HAVANA gene 8957 39207 . + . FI_gene_label "NADSYN1^ENSG00000172890.13" ; ID "CCS--NADSYN1^NADSYN1^ENSG00000172890.13" ; ccdsid "CCDS8201.1" ; exon_id "ENSE00003631393.2" ; exon_number 1 ; gene_id "CCS--NADSYN1^NADSYN1^ENSG00000172890.13" ; gene_name NADSYN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167375.4" ; havana_transcript "OTTHUMT00000394356.2" ; hgnc_id "HGNC:29832" ; level 2 ; orig_coord_info "chr11,71453297,71453381,+" ; protein_id "ENSP00000326424.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCS--NADSYN1^ENST00000319023.7" ; transcript_name "NADSYN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCS--NADSYN1 HAVANA mRNA 8957 39207 . + . FI_gene_label "NADSYN1^ENSG00000172890.13" ; ID "CCS--NADSYN1^ENST00000319023.7" ; Parent "CCS--NADSYN1^NADSYN1^ENSG00000172890.13" ; ccdsid "CCDS8201.1" ; exon_id "ENSE00003631393.2" ; exon_number 1 ; gene_id "CCS--NADSYN1^NADSYN1^ENSG00000172890.13" ; gene_name NADSYN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167375.4" ; havana_transcript "OTTHUMT00000394356.2" ; hgnc_id "HGNC:29832" ; level 2 ; orig_coord_info "chr11,71453297,71453381,+" ; protein_id "ENSP00000326424.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCS--NADSYN1^ENST00000319023.7" ; transcript_name "NADSYN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CREBBP--TRAP1 HAVANA gene 47098 68430 . + . FI_gene_label "TRAP1^ENSG00000126602.11" ; ID "CREBBP--TRAP1^TRAP1^ENSG00000126602.11" ; ccdsid "CCDS10508.1" ; exon_id "ENSE00002655290.1" ; exon_number 1 ; gene_id "CREBBP--TRAP1^TRAP1^ENSG00000126602.11" ; gene_name TRAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129427.4" ; havana_transcript "OTTHUMT00000251586.3" ; hgnc_id "HGNC:16264" ; level 2 ; orig_coord_info "chr16,3717421,3717508,-" ; protein_id "ENSP00000246957.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CREBBP--TRAP1^ENST00000246957.10" ; transcript_name "TRAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CREBBP--TRAP1 HAVANA mRNA 47098 68430 . + . FI_gene_label "TRAP1^ENSG00000126602.11" ; ID "CREBBP--TRAP1^ENST00000246957.10" ; Parent "CREBBP--TRAP1^TRAP1^ENSG00000126602.11" ; ccdsid "CCDS10508.1" ; exon_id "ENSE00002655290.1" ; exon_number 1 ; gene_id "CREBBP--TRAP1^TRAP1^ENSG00000126602.11" ; gene_name TRAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129427.4" ; havana_transcript "OTTHUMT00000251586.3" ; hgnc_id "HGNC:16264" ; level 2 ; orig_coord_info "chr16,3717421,3717508,-" ; protein_id "ENSP00000246957.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CREBBP--TRAP1^ENST00000246957.10" ; transcript_name "TRAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CREBBP--TRAP1 HAVANA gene 1001 44068 . + . FI_gene_label "CREBBP^ENSG00000005339.15" ; ID "CREBBP--TRAP1^CREBBP^ENSG00000005339.15" ; ccdsid "CCDS10509.1" ; exon_id "ENSE00001871332.3" ; exon_number 1 ; gene_id "CREBBP--TRAP1^CREBBP^ENSG00000005339.15" ; gene_name CREBBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000129431.7" ; havana_transcript "OTTHUMT00000251591.3" ; hgnc_id "HGNC:2348" ; level 2 ; orig_coord_info "chr16,3879832,3879916,-" ; protein_id "ENSP00000262367.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CREBBP--TRAP1^ENST00000262367.10" ; transcript_name "CREBBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
CREBBP--TRAP1 HAVANA mRNA 1001 44068 . + . FI_gene_label "CREBBP^ENSG00000005339.15" ; ID "CREBBP--TRAP1^ENST00000262367.10" ; Parent "CREBBP--TRAP1^CREBBP^ENSG00000005339.15" ; ccdsid "CCDS10509.1" ; exon_id "ENSE00001871332.3" ; exon_number 1 ; gene_id "CREBBP--TRAP1^CREBBP^ENSG00000005339.15" ; gene_name CREBBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000129431.7" ; havana_transcript "OTTHUMT00000251591.3" ; hgnc_id "HGNC:2348" ; level 2 ; orig_coord_info "chr16,3879832,3879916,-" ; protein_id "ENSP00000262367.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CREBBP--TRAP1^ENST00000262367.10" ; transcript_name "CREBBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CRTC3--BLM HAVANA gene 1001 28123 . + . FI_gene_label "CRTC3^ENSG00000140577.16" ; ID "CRTC3--BLM^CRTC3^ENSG00000140577.16" ; ccdsid "CCDS32331.1" ; exon_id "ENSE00002569425.2" ; exon_number 1 ; gene_id "CRTC3--BLM^CRTC3^ENSG00000140577.16" ; gene_name CRTC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172295.5" ; havana_transcript "OTTHUMT00000417716.3" ; hgnc_id "HGNC:26148" ; level 2 ; orig_coord_info "chr15,90530072,90530203,+" ; protein_id "ENSP00000268184.6" ; tag NAGNAG_splice_site non_canonical_U12 basic MANE_Select appris_principal_4 CCDS ; transcript_id "CRTC3--BLM^ENST00000268184.11" ; transcript_name "CRTC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRTC3--BLM HAVANA mRNA 1001 28123 . + . FI_gene_label "CRTC3^ENSG00000140577.16" ; ID "CRTC3--BLM^ENST00000268184.11" ; Parent "CRTC3--BLM^CRTC3^ENSG00000140577.16" ; ccdsid "CCDS32331.1" ; exon_id "ENSE00002569425.2" ; exon_number 1 ; gene_id "CRTC3--BLM^CRTC3^ENSG00000140577.16" ; gene_name CRTC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172295.5" ; havana_transcript "OTTHUMT00000417716.3" ; hgnc_id "HGNC:26148" ; level 2 ; orig_coord_info "chr15,90530072,90530203,+" ; protein_id "ENSP00000268184.6" ; tag NAGNAG_splice_site non_canonical_U12 basic MANE_Select appris_principal_4 CCDS ; transcript_id "CRTC3--BLM^ENST00000268184.11" ; transcript_name "CRTC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CRTC3--BLM HAVANA gene 31124 60018 . + . FI_gene_label "BLM^ENSG00000197299.13" ; ID "CRTC3--BLM^BLM^ENSG00000197299.13" ; ccdsid "CCDS10363.1" ; exon_id "ENSE00001294214.3" ; exon_number 2 ; gene_id "CRTC3--BLM^BLM^ENSG00000197299.13" ; gene_name BLM ; gene_type protein_coding ; havana_gene "OTTHUMG00000149834.7" ; havana_transcript "OTTHUMT00000313495.3" ; hgnc_id "HGNC:1058" ; level 2 ; orig_coord_info "chr15,90747393,90747490,+" ; protein_id "ENSP00000347232.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "CRTC3--BLM^ENST00000355112.8" ; transcript_name "BLM-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRTC3--BLM HAVANA mRNA 31124 60018 . + . FI_gene_label "BLM^ENSG00000197299.13" ; ID "CRTC3--BLM^ENST00000355112.8" ; Parent "CRTC3--BLM^BLM^ENSG00000197299.13" ; ccdsid "CCDS10363.1" ; exon_id "ENSE00001294214.3" ; exon_number 2 ; gene_id "CRTC3--BLM^BLM^ENSG00000197299.13" ; gene_name BLM ; gene_type protein_coding ; havana_gene "OTTHUMG00000149834.7" ; havana_transcript "OTTHUMT00000313495.3" ; hgnc_id "HGNC:1058" ; level 2 ; orig_coord_info "chr15,90747393,90747490,+" ; protein_id "ENSP00000347232.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "CRTC3--BLM^ENST00000355112.8" ; transcript_name "BLM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DISC1FP1--TOM1L2 HAVANA gene 19787 39821 . + . FI_gene_label "TOM1L2^ENSG00000175662.18" ; ID "DISC1FP1--TOM1L2^TOM1L2^ENSG00000175662.18" ; ccdsid "CCDS74002.1" ; exon_id "ENSE00003682969.1" ; exon_number 1 ; gene_id "DISC1FP1--TOM1L2^TOM1L2^ENSG00000175662.18" ; gene_name TOM1L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059353.7" ; havana_transcript "OTTHUMT00000443246.1" ; hgnc_id "HGNC:11984" ; level 2 ; orig_coord_info "chr17,17972262,17972313,-" ; protein_id "ENSP00000312860.10" ; tag basic CCDS ; transcript_id "DISC1FP1--TOM1L2^ENST00000318094.14" ; transcript_name "TOM1L2-201" ; transcript_support_level 2 ; transcript_type protein_coding
DISC1FP1--TOM1L2 HAVANA mRNA 19787 39821 . + . FI_gene_label "TOM1L2^ENSG00000175662.18" ; ID "DISC1FP1--TOM1L2^ENST00000318094.14" ; Parent "DISC1FP1--TOM1L2^TOM1L2^ENSG00000175662.18" ; ccdsid "CCDS74002.1" ; exon_id "ENSE00003682969.1" ; exon_number 1 ; gene_id "DISC1FP1--TOM1L2^TOM1L2^ENSG00000175662.18" ; gene_name TOM1L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059353.7" ; havana_transcript "OTTHUMT00000443246.1" ; hgnc_id "HGNC:11984" ; level 2 ; orig_coord_info "chr17,17972262,17972313,-" ; protein_id "ENSP00000312860.10" ; tag basic CCDS ; transcript_id "DISC1FP1--TOM1L2^ENST00000318094.14" ; transcript_name "TOM1L2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DLG5--LRMDA HAVANA gene 1001 37468 . + . FI_gene_label "DLG5^ENSG00000151208.17" ; ID "DLG5--LRMDA^DLG5^ENSG00000151208.17" ; ccdsid "CCDS7353.2" ; exon_id "ENSE00001942599.2" ; exon_number 1 ; gene_id "DLG5--LRMDA^DLG5^ENSG00000151208.17" ; gene_name DLG5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018548.5" ; havana_transcript "OTTHUMT00000048900.3" ; hgnc_id "HGNC:2904" ; level 2 ; orig_coord_info "chr10,77926217,77926520,-" ; protein_id "ENSP00000361467.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DLG5--LRMDA^ENST00000372391.7" ; transcript_name "DLG5-201" ; transcript_support_level 1 ; transcript_type protein_coding
DLG5--LRMDA HAVANA mRNA 1001 37468 . + . FI_gene_label "DLG5^ENSG00000151208.17" ; ID "DLG5--LRMDA^ENST00000372391.7" ; Parent "DLG5--LRMDA^DLG5^ENSG00000151208.17" ; ccdsid "CCDS7353.2" ; exon_id "ENSE00001942599.2" ; exon_number 1 ; gene_id "DLG5--LRMDA^DLG5^ENSG00000151208.17" ; gene_name DLG5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018548.5" ; havana_transcript "OTTHUMT00000048900.3" ; hgnc_id "HGNC:2904" ; level 2 ; orig_coord_info "chr10,77926217,77926520,-" ; protein_id "ENSP00000361467.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DLG5--LRMDA^ENST00000372391.7" ; transcript_name "DLG5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DLG5--LRMDA HAVANA gene 44878 64145 . + . FI_gene_label "LRMDA^ENSG00000148655.15" ; ID "DLG5--LRMDA^LRMDA^ENSG00000148655.15" ; ccdsid "CCDS7351.1" ; exon_id "ENSE00001457957.1" ; exon_number 1 ; gene_id "DLG5--LRMDA^LRMDA^ENSG00000148655.15" ; gene_name LRMDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000018532.5" ; havana_transcript "OTTHUMT00000048839.1" ; hgnc_id "HGNC:23405" ; level 2 ; orig_coord_info "chr10,75782976,75783022,+" ; protein_id "ENSP00000361577.1" ; tag basic CCDS ; transcript_id "DLG5--LRMDA^ENST00000372499.5" ; transcript_name "LRMDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
DLG5--LRMDA HAVANA mRNA 44878 64145 . + . FI_gene_label "LRMDA^ENSG00000148655.15" ; ID "DLG5--LRMDA^ENST00000372499.5" ; Parent "DLG5--LRMDA^LRMDA^ENSG00000148655.15" ; ccdsid "CCDS7351.1" ; exon_id "ENSE00001457957.1" ; exon_number 1 ; gene_id "DLG5--LRMDA^LRMDA^ENSG00000148655.15" ; gene_name LRMDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000018532.5" ; havana_transcript "OTTHUMT00000048839.1" ; hgnc_id "HGNC:23405" ; level 2 ; orig_coord_info "chr10,75782976,75783022,+" ; protein_id "ENSP00000361577.1" ; tag basic CCDS ; transcript_id "DLG5--LRMDA^ENST00000372499.5" ; transcript_name "LRMDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EED--CCDC83 HAVANA gene 1001 16804 . + . FI_gene_label "EED^ENSG00000074266.22" ; ID "EED--CCDC83^EED^ENSG00000074266.22" ; ccdsid "CCDS8273.1" ; exon_id "ENSE00002194984.1" ; exon_number 1 ; gene_id "EED--CCDC83^EED^ENSG00000074266.22" ; gene_name EED ; gene_type protein_coding ; havana_gene "OTTHUMG00000167209.8" ; havana_transcript "OTTHUMT00000393733.2" ; hgnc_id "HGNC:3188" ; level 2 ; orig_coord_info "chr11,86245230,86245343,+" ; protein_id "ENSP00000263360.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "EED--CCDC83^ENST00000263360.11" ; transcript_name "EED-201" ; transcript_support_level 1 ; transcript_type protein_coding
EED--CCDC83 HAVANA mRNA 1001 16804 . + . FI_gene_label "EED^ENSG00000074266.22" ; ID "EED--CCDC83^ENST00000263360.11" ; Parent "EED--CCDC83^EED^ENSG00000074266.22" ; ccdsid "CCDS8273.1" ; exon_id "ENSE00002194984.1" ; exon_number 1 ; gene_id "EED--CCDC83^EED^ENSG00000074266.22" ; gene_name EED ; gene_type protein_coding ; havana_gene "OTTHUMG00000167209.8" ; havana_transcript "OTTHUMT00000393733.2" ; hgnc_id "HGNC:3188" ; level 2 ; orig_coord_info "chr11,86245230,86245343,+" ; protein_id "ENSP00000263360.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "EED--CCDC83^ENST00000263360.11" ; transcript_name "EED-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EED--CCDC83 HAVANA gene 19808 32695 . + . FI_gene_label "CCDC83^ENSG00000150676.13" ; ID "EED--CCDC83^CCDC83^ENSG00000150676.13" ; ccdsid "CCDS8271.1" ; exon_id "ENSE00003564395.1" ; exon_number 2 ; gene_id "EED--CCDC83^CCDC83^ENSG00000150676.13" ; gene_name CCDC83 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166978.2" ; havana_transcript "OTTHUMT00000392214.1" ; hgnc_id "HGNC:28535" ; level 2 ; orig_coord_info "chr11,85865124,85865218,+" ; protein_id "ENSP00000280245.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "EED--CCDC83^ENST00000280245.8" ; transcript_name "CCDC83-201" ; transcript_support_level 2 ; transcript_type protein_coding
EED--CCDC83 HAVANA mRNA 19808 32695 . + . FI_gene_label "CCDC83^ENSG00000150676.13" ; ID "EED--CCDC83^ENST00000280245.8" ; Parent "EED--CCDC83^CCDC83^ENSG00000150676.13" ; ccdsid "CCDS8271.1" ; exon_id "ENSE00003564395.1" ; exon_number 2 ; gene_id "EED--CCDC83^CCDC83^ENSG00000150676.13" ; gene_name CCDC83 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166978.2" ; havana_transcript "OTTHUMT00000392214.1" ; hgnc_id "HGNC:28535" ; level 2 ; orig_coord_info "chr11,85865124,85865218,+" ; protein_id "ENSP00000280245.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "EED--CCDC83^ENST00000280245.8" ; transcript_name "CCDC83-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
EFL1--GOLGA6L11P HAVANA gene 1001 25062 . + . FI_gene_label "EFL1^ENSG00000140598.15" ; ID "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; ccdsid "CCDS42071.1" ; exon_id "ENSE00003786417.1" ; exon_number 2 ; gene_id "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; gene_name EFL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172573.5" ; havana_transcript "OTTHUMT00000419252.2" ; hgnc_id "HGNC:25789" ; level 2 ; orig_coord_info "chr15,82261688,82261778,-" ; protein_id "ENSP00000268206.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EFL1--GOLGA6L11P^ENST00000268206.12" ; transcript_name "EFL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EFL1--GOLGA6L11P HAVANA mRNA 1001 25062 . + . FI_gene_label "EFL1^ENSG00000140598.15" ; ID "EFL1--GOLGA6L11P^ENST00000268206.12" ; Parent "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; ccdsid "CCDS42071.1" ; exon_id "ENSE00003786417.1" ; exon_number 2 ; gene_id "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; gene_name EFL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172573.5" ; havana_transcript "OTTHUMT00000419252.2" ; hgnc_id "HGNC:25789" ; level 2 ; orig_coord_info "chr15,82261688,82261778,-" ; protein_id "ENSP00000268206.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EFL1--GOLGA6L11P^ENST00000268206.12" ; transcript_name "EFL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EIF3K--VEPH1 HAVANA gene 1107 11797 . + . FI_gene_label "EIF3K^ENSG00000178982.10" ; ID "EIF3K--VEPH1^EIF3K^ENSG00000178982.10" ; ccdsid "CCDS12517.1" ; exon_id "ENSE00001235237.5" ; exon_number 1 ; gene_id "EIF3K--VEPH1^EIF3K^ENSG00000178982.10" ; gene_name EIF3K ; gene_type protein_coding ; havana_gene "OTTHUMG00000180865.5" ; havana_transcript "OTTHUMT00000453406.2" ; hgnc_id "HGNC:24656" ; level 2 ; orig_coord_info "chr19,38619269,38619327,+" ; protein_id "ENSP00000248342.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EIF3K--VEPH1^ENST00000248342.9" ; transcript_name "EIF3K-201" ; transcript_support_level 1 ; transcript_type protein_coding
EIF3K--VEPH1 HAVANA mRNA 1107 11797 . + . FI_gene_label "EIF3K^ENSG00000178982.10" ; ID "EIF3K--VEPH1^ENST00000248342.9" ; Parent "EIF3K--VEPH1^EIF3K^ENSG00000178982.10" ; ccdsid "CCDS12517.1" ; exon_id "ENSE00001235237.5" ; exon_number 1 ; gene_id "EIF3K--VEPH1^EIF3K^ENSG00000178982.10" ; gene_name EIF3K ; gene_type protein_coding ; havana_gene "OTTHUMG00000180865.5" ; havana_transcript "OTTHUMT00000453406.2" ; hgnc_id "HGNC:24656" ; level 2 ; orig_coord_info "chr19,38619269,38619327,+" ; protein_id "ENSP00000248342.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EIF3K--VEPH1^ENST00000248342.9" ; transcript_name "EIF3K-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EIF3K--VEPH1 HAVANA gene 17248 42153 . + . FI_gene_label "VEPH1^ENSG00000197415.12" ; ID "EIF3K--VEPH1^VEPH1^ENSG00000197415.12" ; ccdsid "CCDS3179.1" ; exon_id "ENSE00003561694.1" ; exon_number 2 ; gene_id "EIF3K--VEPH1^VEPH1^ENSG00000197415.12" ; gene_name VEPH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158711.6" ; havana_transcript "OTTHUMT00000351845.4" ; hgnc_id "HGNC:25735" ; level 2 ; orig_coord_info "chr3,157495212,157495349,-" ; protein_id "ENSP00000354919.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "EIF3K--VEPH1^ENST00000362010.7" ; transcript_name "VEPH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EIF3K--VEPH1 HAVANA mRNA 17248 42153 . + . FI_gene_label "VEPH1^ENSG00000197415.12" ; ID "EIF3K--VEPH1^ENST00000362010.7" ; Parent "EIF3K--VEPH1^VEPH1^ENSG00000197415.12" ; ccdsid "CCDS3179.1" ; exon_id "ENSE00003561694.1" ; exon_number 2 ; gene_id "EIF3K--VEPH1^VEPH1^ENSG00000197415.12" ; gene_name VEPH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158711.6" ; havana_transcript "OTTHUMT00000351845.4" ; hgnc_id "HGNC:25735" ; level 2 ; orig_coord_info "chr3,157495212,157495349,-" ; protein_id "ENSP00000354919.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "EIF3K--VEPH1^ENST00000362010.7" ; transcript_name "VEPH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPHA5--RYR3 HAVANA gene 1153 27562 . + . FI_gene_label "EPHA5^ENSG00000145242.14" ; ID "EPHA5--RYR3^EPHA5^ENSG00000145242.14" ; ccdsid "CCDS3513.1" ; exon_id "ENSE00001816165.1" ; exon_number 1 ; gene_id "EPHA5--RYR3^EPHA5^ENSG00000145242.14" ; gene_name EPHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129273.4" ; havana_transcript "OTTHUMT00000251388.2" ; hgnc_id "HGNC:3389" ; level 2 ; orig_coord_info "chr4,65669562,65669742,-" ; protein_id "ENSP00000273854.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "EPHA5--RYR3^ENST00000273854.7" ; transcript_name "EPHA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
EPHA5--RYR3 HAVANA mRNA 1153 27562 . + . FI_gene_label "EPHA5^ENSG00000145242.14" ; ID "EPHA5--RYR3^ENST00000273854.7" ; Parent "EPHA5--RYR3^EPHA5^ENSG00000145242.14" ; ccdsid "CCDS3513.1" ; exon_id "ENSE00001816165.1" ; exon_number 1 ; gene_id "EPHA5--RYR3^EPHA5^ENSG00000145242.14" ; gene_name EPHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129273.4" ; havana_transcript "OTTHUMT00000251388.2" ; hgnc_id "HGNC:3389" ; level 2 ; orig_coord_info "chr4,65669562,65669742,-" ; protein_id "ENSP00000273854.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "EPHA5--RYR3^ENST00000273854.7" ; transcript_name "EPHA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPHA5--RYR3 HAVANA gene 30577 147967 . + . FI_gene_label "RYR3^ENSG00000198838.14" ; ID "EPHA5--RYR3^RYR3^ENSG00000198838.14" ; exon_id "ENSE00001540954.1" ; exon_number 1 ; gene_id "EPHA5--RYR3^RYR3^ENSG00000198838.14" ; gene_name RYR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172253.8" ; havana_transcript "OTTHUMT00000488324.1" ; hgnc_id "HGNC:10485" ; level 2 ; orig_coord_info "chr15,33311046,33311096,+" ; protein_id "ENSP00000373884.5" ; tag NAGNAG_splice_site not_organism_supported basic appris_alternative_2 ; transcript_id "EPHA5--RYR3^ENST00000389232.9" ; transcript_name "RYR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
EPHA5--RYR3 HAVANA mRNA 30577 147967 . + . FI_gene_label "RYR3^ENSG00000198838.14" ; ID "EPHA5--RYR3^ENST00000389232.9" ; Parent "EPHA5--RYR3^RYR3^ENSG00000198838.14" ; exon_id "ENSE00001540954.1" ; exon_number 1 ; gene_id "EPHA5--RYR3^RYR3^ENSG00000198838.14" ; gene_name RYR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172253.8" ; havana_transcript "OTTHUMT00000488324.1" ; hgnc_id "HGNC:10485" ; level 2 ; orig_coord_info "chr15,33311046,33311096,+" ; protein_id "ENSP00000373884.5" ; tag NAGNAG_splice_site not_organism_supported basic appris_alternative_2 ; transcript_id "EPHA5--RYR3^ENST00000389232.9" ; transcript_name "RYR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
EPS15--TTC39A HAVANA gene 40890 63097 . + . FI_gene_label "TTC39A^ENSG00000085831.16" ; ID "EPS15--TTC39A^TTC39A^ENSG00000085831.16" ; ccdsid "CCDS72789.1" ; exon_id "ENSE00003509745.1" ; exon_number 2 ; gene_id "EPS15--TTC39A^TTC39A^ENSG00000085831.16" ; gene_name TTC39A ; gene_type protein_coding ; havana_gene "OTTHUMG00000008193.5" ; havana_transcript "OTTHUMT00000387468.1" ; hgnc_id "HGNC:18657" ; level 2 ; orig_coord_info "chr1,51321721,51321785,-" ; protein_id "ENSP00000262675.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "EPS15--TTC39A^ENST00000262675.11" ; transcript_name "TTC39A-201" ; transcript_support_level 2 ; transcript_type protein_coding
EPS15--TTC39A HAVANA mRNA 40890 63097 . + . FI_gene_label "TTC39A^ENSG00000085831.16" ; ID "EPS15--TTC39A^ENST00000262675.11" ; Parent "EPS15--TTC39A^TTC39A^ENSG00000085831.16" ; ccdsid "CCDS72789.1" ; exon_id "ENSE00003509745.1" ; exon_number 2 ; gene_id "EPS15--TTC39A^TTC39A^ENSG00000085831.16" ; gene_name TTC39A ; gene_type protein_coding ; havana_gene "OTTHUMG00000008193.5" ; havana_transcript "OTTHUMT00000387468.1" ; hgnc_id "HGNC:18657" ; level 2 ; orig_coord_info "chr1,51321721,51321785,-" ; protein_id "ENSP00000262675.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "EPS15--TTC39A^ENST00000262675.11" ; transcript_name "TTC39A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
EPS15--TTC39A HAVANA gene 1026 34518 . + . FI_gene_label "EPS15^ENSG00000085832.17" ; ID "EPS15--TTC39A^EPS15^ENSG00000085832.17" ; exon_id "ENSE00001455979.2" ; exon_number 1 ; gene_id "EPS15--TTC39A^EPS15^ENSG00000085832.17" ; gene_name EPS15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008192.3" ; havana_transcript "OTTHUMT00000022423.1" ; hgnc_id "HGNC:3419" ; level 1 ; orig_coord_info "chr1,51519199,51519231,-" ; protein_id "ENSP00000360795.2" ; tag basic appris_alternative_2 exp_conf ; transcript_id "EPS15--TTC39A^ENST00000371730.6" ; transcript_name "EPS15-202" ; transcript_support_level 1 ; transcript_type protein_coding
EPS15--TTC39A HAVANA mRNA 1026 34518 . + . FI_gene_label "EPS15^ENSG00000085832.17" ; ID "EPS15--TTC39A^ENST00000371730.6" ; Parent "EPS15--TTC39A^EPS15^ENSG00000085832.17" ; exon_id "ENSE00001455979.2" ; exon_number 1 ; gene_id "EPS15--TTC39A^EPS15^ENSG00000085832.17" ; gene_name EPS15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008192.3" ; havana_transcript "OTTHUMT00000022423.1" ; hgnc_id "HGNC:3419" ; level 1 ; orig_coord_info "chr1,51519199,51519231,-" ; protein_id "ENSP00000360795.2" ; tag basic appris_alternative_2 exp_conf ; transcript_id "EPS15--TTC39A^ENST00000371730.6" ; transcript_name "EPS15-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERBB4--AC093865.1 HAVANA gene 1313 24545 . + . FI_gene_label "ERBB4^ENSG00000178568.15" ; ID "ERBB4--AC093865.1^ERBB4^ENSG00000178568.15" ; exon_id "ENSE00001775290.1" ; exon_number 1 ; gene_id "ERBB4--AC093865.1^ERBB4^ENSG00000178568.15" ; gene_name ERBB4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133012.6" ; havana_transcript "OTTHUMT00000336978.3" ; hgnc_id "HGNC:3432" ; level 2 ; orig_coord_info "chr2,212538449,212538529,-" ; protein_id "ENSP00000260943.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "ERBB4--AC093865.1^ENST00000260943.10" ; transcript_name "ERBB4-201" ; transcript_support_level 5 ; transcript_type protein_coding
ERBB4--AC093865.1 HAVANA mRNA 1313 24545 . + . FI_gene_label "ERBB4^ENSG00000178568.15" ; ID "ERBB4--AC093865.1^ENST00000260943.10" ; Parent "ERBB4--AC093865.1^ERBB4^ENSG00000178568.15" ; exon_id "ENSE00001775290.1" ; exon_number 1 ; gene_id "ERBB4--AC093865.1^ERBB4^ENSG00000178568.15" ; gene_name ERBB4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133012.6" ; havana_transcript "OTTHUMT00000336978.3" ; hgnc_id "HGNC:3432" ; level 2 ; orig_coord_info "chr2,212538449,212538529,-" ; protein_id "ENSP00000260943.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "ERBB4--AC093865.1^ENST00000260943.10" ; transcript_name "ERBB4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ERMP1--KIAA2026 HAVANA gene 1001 19400 . + . FI_gene_label "ERMP1^ENSG00000099219.14" ; ID "ERMP1--KIAA2026^ERMP1^ENSG00000099219.14" ; ccdsid "CCDS34983.1" ; exon_id "ENSE00001838248.1" ; exon_number 1 ; gene_id "ERMP1--KIAA2026^ERMP1^ENSG00000099219.14" ; gene_name ERMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019508.6" ; havana_transcript "OTTHUMT00000354877.2" ; hgnc_id "HGNC:23703" ; level 2 ; orig_coord_info "chr9,5832690,5833027,-" ; protein_id "ENSP00000340427.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERMP1--KIAA2026^ENST00000339450.10" ; transcript_name "ERMP1-202" ; transcript_support_level 1 ; transcript_type protein_coding
ERMP1--KIAA2026 HAVANA mRNA 1001 19400 . + . FI_gene_label "ERMP1^ENSG00000099219.14" ; ID "ERMP1--KIAA2026^ENST00000339450.10" ; Parent "ERMP1--KIAA2026^ERMP1^ENSG00000099219.14" ; ccdsid "CCDS34983.1" ; exon_id "ENSE00001838248.1" ; exon_number 1 ; gene_id "ERMP1--KIAA2026^ERMP1^ENSG00000099219.14" ; gene_name ERMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019508.6" ; havana_transcript "OTTHUMT00000354877.2" ; hgnc_id "HGNC:23703" ; level 2 ; orig_coord_info "chr9,5832690,5833027,-" ; protein_id "ENSP00000340427.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERMP1--KIAA2026^ENST00000339450.10" ; transcript_name "ERMP1-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERMP1--KIAA2026 HAVANA gene 24810 39914 . + . FI_gene_label "KIAA2026^ENSG00000183354.12" ; ID "ERMP1--KIAA2026^KIAA2026^ENSG00000183354.12" ; exon_id "ENSE00002058200.2" ; exon_number 1 ; gene_id "ERMP1--KIAA2026^KIAA2026^ENSG00000183354.12" ; gene_name KIAA2026 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019507.7" ; havana_transcript "OTTHUMT00000400997.1" ; hgnc_id "HGNC:23378" ; level 2 ; orig_coord_info "chr9,6007195,6007787,-" ; protein_id "ENSP00000370870.2" ; tag basic appris_principal_4 ; transcript_id "ERMP1--KIAA2026^ENST00000381461.6" ; transcript_name "KIAA2026-201" ; transcript_support_level 5 ; transcript_type protein_coding
ERMP1--KIAA2026 HAVANA mRNA 24810 39914 . + . FI_gene_label "KIAA2026^ENSG00000183354.12" ; ID "ERMP1--KIAA2026^ENST00000381461.6" ; Parent "ERMP1--KIAA2026^KIAA2026^ENSG00000183354.12" ; exon_id "ENSE00002058200.2" ; exon_number 1 ; gene_id "ERMP1--KIAA2026^KIAA2026^ENSG00000183354.12" ; gene_name KIAA2026 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019507.7" ; havana_transcript "OTTHUMT00000400997.1" ; hgnc_id "HGNC:23378" ; level 2 ; orig_coord_info "chr9,6007195,6007787,-" ; protein_id "ENSP00000370870.2" ; tag basic appris_principal_4 ; transcript_id "ERMP1--KIAA2026^ENST00000381461.6" ; transcript_name "KIAA2026-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ERN2--NUCB1 HAVANA gene 1005 16849 . + . FI_gene_label "ERN2^ENSG00000134398.15" ; ID "ERN2--NUCB1^ERN2^ENSG00000134398.15" ; ccdsid "CCDS32407.2" ; exon_id "ENSE00002610850.1" ; exon_number 1 ; gene_id "ERN2--NUCB1^ERN2^ENSG00000134398.15" ; gene_name ERN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177020.6" ; havana_transcript "OTTHUMT00000434887.3" ; hgnc_id "HGNC:16942" ; level 2 ; orig_coord_info "chr16,23713095,23713187,-" ; protein_id "ENSP00000256797.5" ; tag upstream_ATG basic MANE_Select appris_principal_4 CCDS ; transcript_id "ERN2--NUCB1^ENST00000256797.9" ; transcript_name "ERN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERN2--NUCB1 HAVANA mRNA 1005 16849 . + . FI_gene_label "ERN2^ENSG00000134398.15" ; ID "ERN2--NUCB1^ENST00000256797.9" ; Parent "ERN2--NUCB1^ERN2^ENSG00000134398.15" ; ccdsid "CCDS32407.2" ; exon_id "ENSE00002610850.1" ; exon_number 1 ; gene_id "ERN2--NUCB1^ERN2^ENSG00000134398.15" ; gene_name ERN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177020.6" ; havana_transcript "OTTHUMT00000434887.3" ; hgnc_id "HGNC:16942" ; level 2 ; orig_coord_info "chr16,23713095,23713187,-" ; protein_id "ENSP00000256797.5" ; tag upstream_ATG basic MANE_Select appris_principal_4 CCDS ; transcript_id "ERN2--NUCB1^ENST00000256797.9" ; transcript_name "ERN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERN2--NUCB1 HAVANA gene 19850 30688 . + . FI_gene_label "NUCB1^ENSG00000104805.16" ; ID "ERN2--NUCB1^NUCB1^ENSG00000104805.16" ; ccdsid "CCDS12740.1" ; exon_id "ENSE00001554217.1" ; exon_number 2 ; gene_id "ERN2--NUCB1^NUCB1^ENSG00000104805.16" ; gene_name NUCB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152514.5" ; havana_transcript "OTTHUMT00000326545.3" ; hgnc_id "HGNC:8043" ; level 2 ; orig_coord_info "chr19,48900797,48900931,+" ; protein_id "ENSP00000385923.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERN2--NUCB1^ENST00000405315.9" ; transcript_name "NUCB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERN2--NUCB1 HAVANA mRNA 19850 30688 . + . FI_gene_label "NUCB1^ENSG00000104805.16" ; ID "ERN2--NUCB1^ENST00000405315.9" ; Parent "ERN2--NUCB1^NUCB1^ENSG00000104805.16" ; ccdsid "CCDS12740.1" ; exon_id "ENSE00001554217.1" ; exon_number 2 ; gene_id "ERN2--NUCB1^NUCB1^ENSG00000104805.16" ; gene_name NUCB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152514.5" ; havana_transcript "OTTHUMT00000326545.3" ; hgnc_id "HGNC:8043" ; level 2 ; orig_coord_info "chr19,48900797,48900931,+" ; protein_id "ENSP00000385923.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERN2--NUCB1^ENST00000405315.9" ; transcript_name "NUCB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERN2--TULP2 HAVANA gene 19850 30673 . + . FI_gene_label "TULP2^ENSG00000104804.8" ; ID "ERN2--TULP2^TULP2^ENSG00000104804.8" ; ccdsid "CCDS12739.1" ; exon_id "ENSE00000853371.3" ; exon_number 2 ; gene_id "ERN2--TULP2^TULP2^ENSG00000104804.8" ; gene_name TULP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164406.3" ; havana_transcript "OTTHUMT00000378633.2" ; hgnc_id "HGNC:12424" ; level 2 ; orig_coord_info "chr19,48897837,48897868,-" ; protein_id "ENSP00000221399.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERN2--TULP2^ENST00000221399.8" ; transcript_name "TULP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERN2--TULP2 HAVANA mRNA 19850 30673 . + . FI_gene_label "TULP2^ENSG00000104804.8" ; ID "ERN2--TULP2^ENST00000221399.8" ; Parent "ERN2--TULP2^TULP2^ENSG00000104804.8" ; ccdsid "CCDS12739.1" ; exon_id "ENSE00000853371.3" ; exon_number 2 ; gene_id "ERN2--TULP2^TULP2^ENSG00000104804.8" ; gene_name TULP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164406.3" ; havana_transcript "OTTHUMT00000378633.2" ; hgnc_id "HGNC:12424" ; level 2 ; orig_coord_info "chr19,48897837,48897868,-" ; protein_id "ENSP00000221399.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERN2--TULP2^ENST00000221399.8" ; transcript_name "TULP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERN2--TULP2 HAVANA gene 1005 16849 . + . FI_gene_label "ERN2^ENSG00000134398.15" ; ID "ERN2--TULP2^ERN2^ENSG00000134398.15" ; ccdsid "CCDS32407.2" ; exon_id "ENSE00002610850.1" ; exon_number 1 ; gene_id "ERN2--TULP2^ERN2^ENSG00000134398.15" ; gene_name ERN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177020.6" ; havana_transcript "OTTHUMT00000434887.3" ; hgnc_id "HGNC:16942" ; level 2 ; orig_coord_info "chr16,23713095,23713187,-" ; protein_id "ENSP00000256797.5" ; tag upstream_ATG basic MANE_Select appris_principal_4 CCDS ; transcript_id "ERN2--TULP2^ENST00000256797.9" ; transcript_name "ERN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERN2--TULP2 HAVANA mRNA 1005 16849 . + . FI_gene_label "ERN2^ENSG00000134398.15" ; ID "ERN2--TULP2^ENST00000256797.9" ; Parent "ERN2--TULP2^ERN2^ENSG00000134398.15" ; ccdsid "CCDS32407.2" ; exon_id "ENSE00002610850.1" ; exon_number 1 ; gene_id "ERN2--TULP2^ERN2^ENSG00000134398.15" ; gene_name ERN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177020.6" ; havana_transcript "OTTHUMT00000434887.3" ; hgnc_id "HGNC:16942" ; level 2 ; orig_coord_info "chr16,23713095,23713187,-" ; protein_id "ENSP00000256797.5" ; tag upstream_ATG basic MANE_Select appris_principal_4 CCDS ; transcript_id "ERN2--TULP2^ENST00000256797.9" ; transcript_name "ERN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRAP--OR5G1P HAVANA gene 1055 8917 . + . FI_gene_label "GRAP^ENSG00000154016.14" ; ID "GRAP--OR5G1P^GRAP^ENSG00000154016.14" ; ccdsid "CCDS11202.1" ; exon_id "ENSE00002663822.2" ; exon_number 1 ; gene_id "GRAP--OR5G1P^GRAP^ENSG00000154016.14" ; gene_name GRAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000059436.4" ; havana_transcript "OTTHUMT00000132176.2" ; hgnc_id "HGNC:4562" ; level 2 ; orig_coord_info "chr17,19046849,19046926,-" ; protein_id "ENSP00000284154.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRAP--OR5G1P^ENST00000284154.10" ; transcript_name "GRAP-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRAP--OR5G1P HAVANA mRNA 1055 8917 . + . FI_gene_label "GRAP^ENSG00000154016.14" ; ID "GRAP--OR5G1P^ENST00000284154.10" ; Parent "GRAP--OR5G1P^GRAP^ENSG00000154016.14" ; ccdsid "CCDS11202.1" ; exon_id "ENSE00002663822.2" ; exon_number 1 ; gene_id "GRAP--OR5G1P^GRAP^ENSG00000154016.14" ; gene_name GRAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000059436.4" ; havana_transcript "OTTHUMT00000132176.2" ; hgnc_id "HGNC:4562" ; level 2 ; orig_coord_info "chr17,19046849,19046926,-" ; protein_id "ENSP00000284154.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRAP--OR5G1P^ENST00000284154.10" ; transcript_name "GRAP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRAP--OR9G2P HAVANA gene 1055 8917 . + . FI_gene_label "GRAP^ENSG00000154016.14" ; ID "GRAP--OR9G2P^GRAP^ENSG00000154016.14" ; ccdsid "CCDS11202.1" ; exon_id "ENSE00002663822.2" ; exon_number 1 ; gene_id "GRAP--OR9G2P^GRAP^ENSG00000154016.14" ; gene_name GRAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000059436.4" ; havana_transcript "OTTHUMT00000132176.2" ; hgnc_id "HGNC:4562" ; level 2 ; orig_coord_info "chr17,19046849,19046926,-" ; protein_id "ENSP00000284154.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRAP--OR9G2P^ENST00000284154.10" ; transcript_name "GRAP-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRAP--OR9G2P HAVANA mRNA 1055 8917 . + . FI_gene_label "GRAP^ENSG00000154016.14" ; ID "GRAP--OR9G2P^ENST00000284154.10" ; Parent "GRAP--OR9G2P^GRAP^ENSG00000154016.14" ; ccdsid "CCDS11202.1" ; exon_id "ENSE00002663822.2" ; exon_number 1 ; gene_id "GRAP--OR9G2P^GRAP^ENSG00000154016.14" ; gene_name GRAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000059436.4" ; havana_transcript "OTTHUMT00000132176.2" ; hgnc_id "HGNC:4562" ; level 2 ; orig_coord_info "chr17,19046849,19046926,-" ; protein_id "ENSP00000284154.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRAP--OR9G2P^ENST00000284154.10" ; transcript_name "GRAP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IGL-@-ext--WNT6 HAVANA gene 896102 900057 . + . FI_gene_label "WNT6^ENSG00000115596.4" ; ID "IGL-@-ext--WNT6^WNT6^ENSG00000115596.4" ; ccdsid "CCDS2425.1" ; exon_id "ENSE00001075206.5" ; exon_number 1 ; gene_id "IGL-@-ext--WNT6^WNT6^ENSG00000115596.4" ; gene_name WNT6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133082.3" ; havana_transcript "OTTHUMT00000256727.3" ; hgnc_id "HGNC:12785" ; level 2 ; orig_coord_info "chr2,218860038,218860117,+" ; protein_id "ENSP00000233948.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IGL-@-ext--WNT6^ENST00000233948.4" ; transcript_name "WNT6-201" ; transcript_support_level 1 ; transcript_type protein_coding
IGL-@-ext--WNT6 HAVANA mRNA 896102 900057 . + . FI_gene_label "WNT6^ENSG00000115596.4" ; ID "IGL-@-ext--WNT6^ENST00000233948.4" ; Parent "IGL-@-ext--WNT6^WNT6^ENSG00000115596.4" ; ccdsid "CCDS2425.1" ; exon_id "ENSE00001075206.5" ; exon_number 1 ; gene_id "IGL-@-ext--WNT6^WNT6^ENSG00000115596.4" ; gene_name WNT6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133082.3" ; havana_transcript "OTTHUMT00000256727.3" ; hgnc_id "HGNC:12785" ; level 2 ; orig_coord_info "chr2,218860038,218860117,+" ; protein_id "ENSP00000233948.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IGL-@-ext--WNT6^ENST00000233948.4" ; transcript_name "WNT6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IKZF2--AC093865.1 HAVANA gene 3090 19227 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "IKZF2--AC093865.1^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "IKZF2--AC093865.1^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "IKZF2--AC093865.1^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
IKZF2--AC093865.1 HAVANA mRNA 3090 19227 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "IKZF2--AC093865.1^ENST00000342002.6" ; Parent "IKZF2--AC093865.1^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "IKZF2--AC093865.1^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "IKZF2--AC093865.1^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IKZF2--SGO1-AS1 HAVANA gene 3090 19227 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "IKZF2--SGO1-AS1^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "IKZF2--SGO1-AS1^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "IKZF2--SGO1-AS1^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
IKZF2--SGO1-AS1 HAVANA mRNA 3090 19227 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "IKZF2--SGO1-AS1^ENST00000342002.6" ; Parent "IKZF2--SGO1-AS1^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "IKZF2--SGO1-AS1^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "IKZF2--SGO1-AS1^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM2A--AC104534.1 ENSEMBL gene 2823 29156 . + . FI_gene_label "KDM2A^ENSG00000173120.15" ; ID "KDM2A--AC104534.1^KDM2A^ENSG00000173120.15" ; exon_id "ENSE00003741868.1" ; exon_number 3 ; gene_id "KDM2A--AC104534.1^KDM2A^ENSG00000173120.15" ; gene_name KDM2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167103.3" ; hgnc_id "HGNC:13606" ; level 3 ; orig_coord_info "chr11,67180088,67180217,+" ; protein_id "ENSP00000309302.6" ; tag basic ; transcript_id "KDM2A--AC104534.1^ENST00000308783.9" ; transcript_name "KDM2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KDM2A--AC104534.1 ENSEMBL mRNA 2823 29156 . + . FI_gene_label "KDM2A^ENSG00000173120.15" ; ID "KDM2A--AC104534.1^ENST00000308783.9" ; Parent "KDM2A--AC104534.1^KDM2A^ENSG00000173120.15" ; exon_id "ENSE00003741868.1" ; exon_number 3 ; gene_id "KDM2A--AC104534.1^KDM2A^ENSG00000173120.15" ; gene_name KDM2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167103.3" ; hgnc_id "HGNC:13606" ; level 3 ; orig_coord_info "chr11,67180088,67180217,+" ; protein_id "ENSP00000309302.6" ; tag basic ; transcript_id "KDM2A--AC104534.1^ENST00000308783.9" ; transcript_name "KDM2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC02835--RYR3 HAVANA gene 6873 124263 . + . FI_gene_label "RYR3^ENSG00000198838.14" ; ID "LINC02835--RYR3^RYR3^ENSG00000198838.14" ; exon_id "ENSE00001540954.1" ; exon_number 1 ; gene_id "LINC02835--RYR3^RYR3^ENSG00000198838.14" ; gene_name RYR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172253.8" ; havana_transcript "OTTHUMT00000488324.1" ; hgnc_id "HGNC:10485" ; level 2 ; orig_coord_info "chr15,33311046,33311096,+" ; protein_id "ENSP00000373884.5" ; tag NAGNAG_splice_site not_organism_supported basic appris_alternative_2 ; transcript_id "LINC02835--RYR3^ENST00000389232.9" ; transcript_name "RYR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
LINC02835--RYR3 HAVANA mRNA 6873 124263 . + . FI_gene_label "RYR3^ENSG00000198838.14" ; ID "LINC02835--RYR3^ENST00000389232.9" ; Parent "LINC02835--RYR3^RYR3^ENSG00000198838.14" ; exon_id "ENSE00001540954.1" ; exon_number 1 ; gene_id "LINC02835--RYR3^RYR3^ENSG00000198838.14" ; gene_name RYR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172253.8" ; havana_transcript "OTTHUMT00000488324.1" ; hgnc_id "HGNC:10485" ; level 2 ; orig_coord_info "chr15,33311046,33311096,+" ; protein_id "ENSP00000373884.5" ; tag NAGNAG_splice_site not_organism_supported basic appris_alternative_2 ; transcript_id "LINC02835--RYR3^ENST00000389232.9" ; transcript_name "RYR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
LMNA--CRP HAVANA gene 27413 29713 . + . FI_gene_label "CRP^ENSG00000132693.12" ; ID "LMNA--CRP^CRP^ENSG00000132693.12" ; ccdsid "CCDS30911.1" ; exon_id "ENSE00001328381.2" ; exon_number 1 ; gene_id "LMNA--CRP^CRP^ENSG00000132693.12" ; gene_name CRP ; gene_type protein_coding ; havana_gene "OTTHUMG00000035344.1" ; havana_transcript "OTTHUMT00000085553.1" ; hgnc_id "HGNC:2367" ; level 2 ; orig_coord_info "chr1,159714425,159714485,-" ; protein_id "ENSP00000255030.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LMNA--CRP^ENST00000255030.9" ; transcript_name "CRP-201" ; transcript_support_level 1 ; transcript_type protein_coding
LMNA--CRP HAVANA mRNA 27413 29713 . + . FI_gene_label "CRP^ENSG00000132693.12" ; ID "LMNA--CRP^ENST00000255030.9" ; Parent "LMNA--CRP^CRP^ENSG00000132693.12" ; ccdsid "CCDS30911.1" ; exon_id "ENSE00001328381.2" ; exon_number 1 ; gene_id "LMNA--CRP^CRP^ENSG00000132693.12" ; gene_name CRP ; gene_type protein_coding ; havana_gene "OTTHUMG00000035344.1" ; havana_transcript "OTTHUMT00000085553.1" ; hgnc_id "HGNC:2367" ; level 2 ; orig_coord_info "chr1,159714425,159714485,-" ; protein_id "ENSP00000255030.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LMNA--CRP^ENST00000255030.9" ; transcript_name "CRP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LMNA--CRP HAVANA gene 11719 23624 . + . FI_gene_label "LMNA^ENSG00000160789.23" ; ID "LMNA--CRP^LMNA^ENSG00000160789.23" ; ccdsid "CCDS1129.1" ; exon_id "ENSE00001554780.1" ; exon_number 2 ; gene_id "LMNA--CRP^LMNA^ENSG00000160789.23" ; gene_name LMNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000013961.6" ; hgnc_id "HGNC:6636" ; level 2 ; orig_coord_info "chr1,156114919,156115274,+" ; protein_id "ENSP00000355292.6" ; tag RNA_Seq_supported_only basic appris_principal_1 CCDS ; transcript_id "LMNA--CRP^ENST00000361308.9" ; transcript_name "LMNA-201" ; transcript_support_level 5 ; transcript_type protein_coding
LMNA--CRP HAVANA mRNA 11719 23624 . + . FI_gene_label "LMNA^ENSG00000160789.23" ; ID "LMNA--CRP^ENST00000361308.9" ; Parent "LMNA--CRP^LMNA^ENSG00000160789.23" ; ccdsid "CCDS1129.1" ; exon_id "ENSE00001554780.1" ; exon_number 2 ; gene_id "LMNA--CRP^LMNA^ENSG00000160789.23" ; gene_name LMNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000013961.6" ; hgnc_id "HGNC:6636" ; level 2 ; orig_coord_info "chr1,156114919,156115274,+" ; protein_id "ENSP00000355292.6" ; tag RNA_Seq_supported_only basic appris_principal_1 CCDS ; transcript_id "LMNA--CRP^ENST00000361308.9" ; transcript_name "LMNA-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
LRMDA--PPP3CB-AS1 HAVANA gene 5410 24677 . + . FI_gene_label "LRMDA^ENSG00000148655.15" ; ID "LRMDA--PPP3CB-AS1^LRMDA^ENSG00000148655.15" ; ccdsid "CCDS7351.1" ; exon_id "ENSE00001457957.1" ; exon_number 1 ; gene_id "LRMDA--PPP3CB-AS1^LRMDA^ENSG00000148655.15" ; gene_name LRMDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000018532.5" ; havana_transcript "OTTHUMT00000048839.1" ; hgnc_id "HGNC:23405" ; level 2 ; orig_coord_info "chr10,75782976,75783022,+" ; protein_id "ENSP00000361577.1" ; tag basic CCDS ; transcript_id "LRMDA--PPP3CB-AS1^ENST00000372499.5" ; transcript_name "LRMDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRMDA--PPP3CB-AS1 HAVANA mRNA 5410 24677 . + . FI_gene_label "LRMDA^ENSG00000148655.15" ; ID "LRMDA--PPP3CB-AS1^ENST00000372499.5" ; Parent "LRMDA--PPP3CB-AS1^LRMDA^ENSG00000148655.15" ; ccdsid "CCDS7351.1" ; exon_id "ENSE00001457957.1" ; exon_number 1 ; gene_id "LRMDA--PPP3CB-AS1^LRMDA^ENSG00000148655.15" ; gene_name LRMDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000018532.5" ; havana_transcript "OTTHUMT00000048839.1" ; hgnc_id "HGNC:23405" ; level 2 ; orig_coord_info "chr10,75782976,75783022,+" ; protein_id "ENSP00000361577.1" ; tag basic CCDS ; transcript_id "LRMDA--PPP3CB-AS1^ENST00000372499.5" ; transcript_name "LRMDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRMDA--TMEM254 HAVANA gene 30861 37484 . + . FI_gene_label "TMEM254^ENSG00000133678.14" ; ID "LRMDA--TMEM254^TMEM254^ENSG00000133678.14" ; exon_id "ENSE00001457395.3" ; exon_number 1 ; gene_id "LRMDA--TMEM254^TMEM254^ENSG00000133678.14" ; gene_name TMEM254 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018602.2" ; havana_transcript "OTTHUMT00000049031.1" ; hgnc_id "HGNC:25804" ; level 2 ; orig_coord_info "chr10,80079036,80079184,+" ; protein_id "ENSP00000361347.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "LRMDA--TMEM254^ENST00000372273.7" ; transcript_name "TMEM254-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRMDA--TMEM254 HAVANA mRNA 30861 37484 . + . FI_gene_label "TMEM254^ENSG00000133678.14" ; ID "LRMDA--TMEM254^ENST00000372273.7" ; Parent "LRMDA--TMEM254^TMEM254^ENSG00000133678.14" ; exon_id "ENSE00001457395.3" ; exon_number 1 ; gene_id "LRMDA--TMEM254^TMEM254^ENSG00000133678.14" ; gene_name TMEM254 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018602.2" ; havana_transcript "OTTHUMT00000049031.1" ; hgnc_id "HGNC:25804" ; level 2 ; orig_coord_info "chr10,80079036,80079184,+" ; protein_id "ENSP00000361347.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "LRMDA--TMEM254^ENST00000372273.7" ; transcript_name "TMEM254-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRMDA--TMEM254 HAVANA gene 5410 24677 . + . FI_gene_label "LRMDA^ENSG00000148655.15" ; ID "LRMDA--TMEM254^LRMDA^ENSG00000148655.15" ; ccdsid "CCDS7351.1" ; exon_id "ENSE00001457957.1" ; exon_number 1 ; gene_id "LRMDA--TMEM254^LRMDA^ENSG00000148655.15" ; gene_name LRMDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000018532.5" ; havana_transcript "OTTHUMT00000048839.1" ; hgnc_id "HGNC:23405" ; level 2 ; orig_coord_info "chr10,75782976,75783022,+" ; protein_id "ENSP00000361577.1" ; tag basic CCDS ; transcript_id "LRMDA--TMEM254^ENST00000372499.5" ; transcript_name "LRMDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRMDA--TMEM254 HAVANA mRNA 5410 24677 . + . FI_gene_label "LRMDA^ENSG00000148655.15" ; ID "LRMDA--TMEM254^ENST00000372499.5" ; Parent "LRMDA--TMEM254^LRMDA^ENSG00000148655.15" ; ccdsid "CCDS7351.1" ; exon_id "ENSE00001457957.1" ; exon_number 1 ; gene_id "LRMDA--TMEM254^LRMDA^ENSG00000148655.15" ; gene_name LRMDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000018532.5" ; havana_transcript "OTTHUMT00000048839.1" ; hgnc_id "HGNC:23405" ; level 2 ; orig_coord_info "chr10,75782976,75783022,+" ; protein_id "ENSP00000361577.1" ; tag basic CCDS ; transcript_id "LRMDA--TMEM254^ENST00000372499.5" ; transcript_name "LRMDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP2--TDRD5 HAVANA gene 90731 109803 . + . FI_gene_label "TDRD5^ENSG00000162782.16" ; ID "LRP2--TDRD5^TDRD5^ENSG00000162782.16" ; ccdsid "CCDS1332.1" ; exon_id "ENSE00003895756.1" ; exon_number 2 ; gene_id "LRP2--TDRD5^TDRD5^ENSG00000162782.16" ; gene_name TDRD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035259.3" ; havana_transcript "OTTHUMT00000085294.1" ; hgnc_id "HGNC:20614" ; level 2 ; orig_coord_info "chr1,179592616,179592847,+" ; protein_id "ENSP00000294848.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "LRP2--TDRD5^ENST00000294848.12" ; transcript_name "TDRD5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP2--TDRD5 HAVANA mRNA 90731 109803 . + . FI_gene_label "TDRD5^ENSG00000162782.16" ; ID "LRP2--TDRD5^ENST00000294848.12" ; Parent "LRP2--TDRD5^TDRD5^ENSG00000162782.16" ; ccdsid "CCDS1332.1" ; exon_id "ENSE00003895756.1" ; exon_number 2 ; gene_id "LRP2--TDRD5^TDRD5^ENSG00000162782.16" ; gene_name TDRD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035259.3" ; havana_transcript "OTTHUMT00000085294.1" ; hgnc_id "HGNC:20614" ; level 2 ; orig_coord_info "chr1,179592616,179592847,+" ; protein_id "ENSP00000294848.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "LRP2--TDRD5^ENST00000294848.12" ; transcript_name "TDRD5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP2--TDRD5 HAVANA gene 1001 27233 . + . FI_gene_label "LRP2^ENSG00000081479.15" ; ID "LRP2--TDRD5^LRP2^ENSG00000081479.15" ; exon_id "ENSE00001733691.1" ; exon_number 1 ; gene_id "LRP2--TDRD5^LRP2^ENSG00000081479.15" ; gene_name LRP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132179.5" ; havana_transcript "OTTHUMT00000337306.1" ; hgnc_id "HGNC:6694" ; level 1 ; orig_coord_info "chr2,169362321,169362399,-" ; protein_id "ENSP00000409813.1" ; tag basic exp_conf ; transcript_id "LRP2--TDRD5^ENST00000443831.1" ; transcript_name "LRP2-201" ; transcript_support_level 2 ; transcript_type protein_coding
LRP2--TDRD5 HAVANA mRNA 1001 27233 . + . FI_gene_label "LRP2^ENSG00000081479.15" ; ID "LRP2--TDRD5^ENST00000443831.1" ; Parent "LRP2--TDRD5^LRP2^ENSG00000081479.15" ; exon_id "ENSE00001733691.1" ; exon_number 1 ; gene_id "LRP2--TDRD5^LRP2^ENSG00000081479.15" ; gene_name LRP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132179.5" ; havana_transcript "OTTHUMT00000337306.1" ; hgnc_id "HGNC:6694" ; level 1 ; orig_coord_info "chr2,169362321,169362399,-" ; protein_id "ENSP00000409813.1" ; tag basic exp_conf ; transcript_id "LRP2--TDRD5^ENST00000443831.1" ; transcript_name "LRP2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MACF1--GUSBP1 HAVANA gene 112475 130908 . + . FI_gene_label "MACF1^ENSG00000127603.30" ; ID "MACF1--GUSBP1^MACF1^ENSG00000127603.30" ; exon_id "ENSE00001752443.1" ; exon_number 1 ; gene_id "MACF1--GUSBP1^MACF1^ENSG00000127603.30" ; gene_name MACF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007754.17" ; havana_transcript "OTTHUMT00000022993.1" ; hgnc_id "HGNC:13664" ; level 2 ; orig_coord_info "chr1,39453837,39453850,+" ; protein_id "ENSP00000353231.4" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MACF1--GUSBP1^ENST00000360115.8" ; transcript_name "MACF1-202" ; transcript_support_level 5 ; transcript_type protein_coding
MACF1--GUSBP1 HAVANA mRNA 112475 130908 . + . FI_gene_label "MACF1^ENSG00000127603.30" ; ID "MACF1--GUSBP1^ENST00000360115.8" ; Parent "MACF1--GUSBP1^MACF1^ENSG00000127603.30" ; exon_id "ENSE00001752443.1" ; exon_number 1 ; gene_id "MACF1--GUSBP1^MACF1^ENSG00000127603.30" ; gene_name MACF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007754.17" ; havana_transcript "OTTHUMT00000022993.1" ; hgnc_id "HGNC:13664" ; level 2 ; orig_coord_info "chr1,39453837,39453850,+" ; protein_id "ENSP00000353231.4" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MACF1--GUSBP1^ENST00000360115.8" ; transcript_name "MACF1-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MARCHF6--FAM53A HAVANA gene 1001 36584 . + . FI_gene_label "MARCHF6^ENSG00000145495.16" ; ID "MARCHF6--FAM53A^MARCHF6^ENSG00000145495.16" ; ccdsid "CCDS34135.1" ; exon_id "ENSE00002032992.2" ; exon_number 1 ; gene_id "MARCHF6--FAM53A^MARCHF6^ENSG00000145495.16" ; gene_name MARCHF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162027.5" ; havana_transcript "OTTHUMT00000366919.3" ; hgnc_id "HGNC:30550" ; level 2 ; orig_coord_info "chr5,10353899,10353917,+" ; protein_id "ENSP00000274140.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARCHF6--FAM53A^ENST00000274140.10" ; transcript_name "MARCHF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARCHF6--FAM53A HAVANA mRNA 1001 36584 . + . FI_gene_label "MARCHF6^ENSG00000145495.16" ; ID "MARCHF6--FAM53A^ENST00000274140.10" ; Parent "MARCHF6--FAM53A^MARCHF6^ENSG00000145495.16" ; ccdsid "CCDS34135.1" ; exon_id "ENSE00002032992.2" ; exon_number 1 ; gene_id "MARCHF6--FAM53A^MARCHF6^ENSG00000145495.16" ; gene_name MARCHF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162027.5" ; havana_transcript "OTTHUMT00000366919.3" ; hgnc_id "HGNC:30550" ; level 2 ; orig_coord_info "chr5,10353899,10353917,+" ; protein_id "ENSP00000274140.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARCHF6--FAM53A^ENST00000274140.10" ; transcript_name "MARCHF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MARCHF6--FAM53A HAVANA gene 39585 48690 . + . FI_gene_label "FAM53A^ENSG00000174137.13" ; ID "MARCHF6--FAM53A^FAM53A^ENSG00000174137.13" ; ccdsid "CCDS33939.1" ; exon_id "ENSE00002054040.1" ; exon_number 2 ; gene_id "MARCHF6--FAM53A^FAM53A^ENSG00000174137.13" ; gene_name FAM53A ; gene_type protein_coding ; havana_gene "OTTHUMG00000159855.6" ; hgnc_id "HGNC:31860" ; level 2 ; orig_coord_info "chr4,1668667,1668741,-" ; protein_id "ENSP00000310057.6" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "MARCHF6--FAM53A^ENST00000308132.10" ; transcript_name "FAM53A-201" ; transcript_support_level 2 ; transcript_type protein_coding
MARCHF6--FAM53A HAVANA mRNA 39585 48690 . + . FI_gene_label "FAM53A^ENSG00000174137.13" ; ID "MARCHF6--FAM53A^ENST00000308132.10" ; Parent "MARCHF6--FAM53A^FAM53A^ENSG00000174137.13" ; ccdsid "CCDS33939.1" ; exon_id "ENSE00002054040.1" ; exon_number 2 ; gene_id "MARCHF6--FAM53A^FAM53A^ENSG00000174137.13" ; gene_name FAM53A ; gene_type protein_coding ; havana_gene "OTTHUMG00000159855.6" ; hgnc_id "HGNC:31860" ; level 2 ; orig_coord_info "chr4,1668667,1668741,-" ; protein_id "ENSP00000310057.6" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "MARCHF6--FAM53A^ENST00000308132.10" ; transcript_name "FAM53A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--FGF12 HAVANA gene 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--FGF12^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MB21D2--FGF12 HAVANA mRNA 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--FGF12^ENST00000392452.3" ; Parent "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--FGF12^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--FGF12 HAVANA gene 9187 17567 . + . FI_gene_label "FGF12^ENSG00000114279.14" ; ID "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; exon_id "ENSE00001698574.1" ; exon_number 1 ; gene_id "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; gene_name FGF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156132.5" ; havana_transcript "OTTHUMT00000343163.2" ; hgnc_id "HGNC:3668" ; level 2 ; orig_coord_info "chr3,192727181,192727193,-" ; protein_id "ENSP00000395517.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "MB21D2--FGF12^ENST00000418610.1" ; transcript_name "FGF12-201" ; transcript_support_level 4 ; transcript_type protein_coding
MB21D2--FGF12 HAVANA mRNA 9187 17567 . + . FI_gene_label "FGF12^ENSG00000114279.14" ; ID "MB21D2--FGF12^ENST00000418610.1" ; Parent "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; exon_id "ENSE00001698574.1" ; exon_number 1 ; gene_id "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; gene_name FGF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156132.5" ; havana_transcript "OTTHUMT00000343163.2" ; hgnc_id "HGNC:3668" ; level 2 ; orig_coord_info "chr3,192727181,192727193,-" ; protein_id "ENSP00000395517.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "MB21D2--FGF12^ENST00000418610.1" ; transcript_name "FGF12-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
MEP1A--ADGRF1 HAVANA gene 1001 13882 . + . FI_gene_label "MEP1A^ENSG00000112818.11" ; ID "MEP1A--ADGRF1^MEP1A^ENSG00000112818.11" ; ccdsid "CCDS4918.1" ; exon_id "ENSE00000850395.8" ; exon_number 1 ; gene_id "MEP1A--ADGRF1^MEP1A^ENSG00000112818.11" ; gene_name MEP1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014790.2" ; havana_transcript "OTTHUMT00000040803.2" ; hgnc_id "HGNC:7015" ; level 2 ; orig_coord_info "chr6,46793399,46793467,+" ; protein_id "ENSP00000230588.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MEP1A--ADGRF1^ENST00000230588.9" ; transcript_name "MEP1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
MEP1A--ADGRF1 HAVANA mRNA 1001 13882 . + . FI_gene_label "MEP1A^ENSG00000112818.11" ; ID "MEP1A--ADGRF1^ENST00000230588.9" ; Parent "MEP1A--ADGRF1^MEP1A^ENSG00000112818.11" ; ccdsid "CCDS4918.1" ; exon_id "ENSE00000850395.8" ; exon_number 1 ; gene_id "MEP1A--ADGRF1^MEP1A^ENSG00000112818.11" ; gene_name MEP1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014790.2" ; havana_transcript "OTTHUMT00000040803.2" ; hgnc_id "HGNC:7015" ; level 2 ; orig_coord_info "chr6,46793399,46793467,+" ; protein_id "ENSP00000230588.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MEP1A--ADGRF1^ENST00000230588.9" ; transcript_name "MEP1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MEP1A--ADGRF1 ENSEMBL gene 26009 38751 . + . FI_gene_label "ADGRF1^ENSG00000153292.16" ; ID "MEP1A--ADGRF1^ADGRF1^ENSG00000153292.16" ; exon_id "ENSE00002279638.1" ; exon_number 1 ; gene_id "MEP1A--ADGRF1^ADGRF1^ENSG00000153292.16" ; gene_name ADGRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014795.3" ; hgnc_id "HGNC:18990" ; level 3 ; orig_coord_info "chr6,47018480,47018499,-" ; protein_id "ENSP00000283297.5" ; tag basic ; transcript_id "MEP1A--ADGRF1^ENST00000283297.5" ; transcript_name "ADGRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MEP1A--ADGRF1 ENSEMBL mRNA 26009 38751 . + . FI_gene_label "ADGRF1^ENSG00000153292.16" ; ID "MEP1A--ADGRF1^ENST00000283297.5" ; Parent "MEP1A--ADGRF1^ADGRF1^ENSG00000153292.16" ; exon_id "ENSE00002279638.1" ; exon_number 1 ; gene_id "MEP1A--ADGRF1^ADGRF1^ENSG00000153292.16" ; gene_name ADGRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014795.3" ; hgnc_id "HGNC:18990" ; level 3 ; orig_coord_info "chr6,47018480,47018499,-" ; protein_id "ENSP00000283297.5" ; tag basic ; transcript_id "MEP1A--ADGRF1^ENST00000283297.5" ; transcript_name "ADGRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MEP1A--TNFRSF21 HAVANA gene 1001 13882 . + . FI_gene_label "MEP1A^ENSG00000112818.11" ; ID "MEP1A--TNFRSF21^MEP1A^ENSG00000112818.11" ; ccdsid "CCDS4918.1" ; exon_id "ENSE00000850395.8" ; exon_number 1 ; gene_id "MEP1A--TNFRSF21^MEP1A^ENSG00000112818.11" ; gene_name MEP1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014790.2" ; havana_transcript "OTTHUMT00000040803.2" ; hgnc_id "HGNC:7015" ; level 2 ; orig_coord_info "chr6,46793399,46793467,+" ; protein_id "ENSP00000230588.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MEP1A--TNFRSF21^ENST00000230588.9" ; transcript_name "MEP1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
MEP1A--TNFRSF21 HAVANA mRNA 1001 13882 . + . FI_gene_label "MEP1A^ENSG00000112818.11" ; ID "MEP1A--TNFRSF21^ENST00000230588.9" ; Parent "MEP1A--TNFRSF21^MEP1A^ENSG00000112818.11" ; ccdsid "CCDS4918.1" ; exon_id "ENSE00000850395.8" ; exon_number 1 ; gene_id "MEP1A--TNFRSF21^MEP1A^ENSG00000112818.11" ; gene_name MEP1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014790.2" ; havana_transcript "OTTHUMT00000040803.2" ; hgnc_id "HGNC:7015" ; level 2 ; orig_coord_info "chr6,46793399,46793467,+" ; protein_id "ENSP00000230588.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MEP1A--TNFRSF21^ENST00000230588.9" ; transcript_name "MEP1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MEP1A--TNFRSF21 HAVANA gene 16883 25477 . + . FI_gene_label "TNFRSF21^ENSG00000146072.6" ; ID "MEP1A--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; ccdsid "CCDS4921.1" ; exon_id "ENSE00001226615.2" ; exon_number 1 ; gene_id "MEP1A--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; gene_name TNFRSF21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014796.1" ; havana_transcript "OTTHUMT00000040814.1" ; hgnc_id "HGNC:13469" ; level 2 ; orig_coord_info "chr6,47309416,47309511,-" ; protein_id "ENSP00000296861.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MEP1A--TNFRSF21^ENST00000296861.2" ; transcript_name "TNFRSF21-201" ; transcript_support_level 1 ; transcript_type protein_coding
MEP1A--TNFRSF21 HAVANA mRNA 16883 25477 . + . FI_gene_label "TNFRSF21^ENSG00000146072.6" ; ID "MEP1A--TNFRSF21^ENST00000296861.2" ; Parent "MEP1A--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; ccdsid "CCDS4921.1" ; exon_id "ENSE00001226615.2" ; exon_number 1 ; gene_id "MEP1A--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; gene_name TNFRSF21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014796.1" ; havana_transcript "OTTHUMT00000040814.1" ; hgnc_id "HGNC:13469" ; level 2 ; orig_coord_info "chr6,47309416,47309511,-" ; protein_id "ENSP00000296861.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MEP1A--TNFRSF21^ENST00000296861.2" ; transcript_name "TNFRSF21-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MINDY1--PRUNE1 HAVANA gene 13717 24124 . + . FI_gene_label "PRUNE1^ENSG00000143363.17" ; ID "MINDY1--PRUNE1^PRUNE1^ENSG00000143363.17" ; ccdsid "CCDS977.1" ; exon_id "ENSE00003522652.2" ; exon_number 1 ; gene_id "MINDY1--PRUNE1^PRUNE1^ENSG00000143363.17" ; gene_name PRUNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035062.5" ; havana_transcript "OTTHUMT00000084885.2" ; hgnc_id "HGNC:13420" ; level 2 ; orig_coord_info "chr1,151008633,151008671,+" ; protein_id "ENSP00000271620.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MINDY1--PRUNE1^ENST00000271620.8" ; transcript_name "PRUNE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MINDY1--PRUNE1 HAVANA mRNA 13717 24124 . + . FI_gene_label "PRUNE1^ENSG00000143363.17" ; ID "MINDY1--PRUNE1^ENST00000271620.8" ; Parent "MINDY1--PRUNE1^PRUNE1^ENSG00000143363.17" ; ccdsid "CCDS977.1" ; exon_id "ENSE00003522652.2" ; exon_number 1 ; gene_id "MINDY1--PRUNE1^PRUNE1^ENSG00000143363.17" ; gene_name PRUNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035062.5" ; havana_transcript "OTTHUMT00000084885.2" ; hgnc_id "HGNC:13420" ; level 2 ; orig_coord_info "chr1,151008633,151008671,+" ; protein_id "ENSP00000271620.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MINDY1--PRUNE1^ENST00000271620.8" ; transcript_name "PRUNE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MINDY1--PRUNE1 HAVANA gene 2143 10224 . + . FI_gene_label "MINDY1^ENSG00000143409.15" ; ID "MINDY1--PRUNE1^MINDY1^ENSG00000143409.15" ; ccdsid "CCDS30854.1" ; exon_id "ENSE00001448336.1" ; exon_number 2 ; gene_id "MINDY1--PRUNE1^MINDY1^ENSG00000143409.15" ; gene_name MINDY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035061.7" ; havana_transcript "OTTHUMT00000084883.3" ; hgnc_id "HGNC:25648" ; level 2 ; orig_coord_info "chr1,151002165,151002191,-" ; protein_id "ENSP00000310923.5" ; tag basic CCDS ; transcript_id "MINDY1--PRUNE1^ENST00000312210.9" ; transcript_name "MINDY1-201" ; transcript_support_level 2 ; transcript_type protein_coding
MINDY1--PRUNE1 HAVANA mRNA 2143 10224 . + . FI_gene_label "MINDY1^ENSG00000143409.15" ; ID "MINDY1--PRUNE1^ENST00000312210.9" ; Parent "MINDY1--PRUNE1^MINDY1^ENSG00000143409.15" ; ccdsid "CCDS30854.1" ; exon_id "ENSE00001448336.1" ; exon_number 2 ; gene_id "MINDY1--PRUNE1^MINDY1^ENSG00000143409.15" ; gene_name MINDY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035061.7" ; havana_transcript "OTTHUMT00000084883.3" ; hgnc_id "HGNC:25648" ; level 2 ; orig_coord_info "chr1,151002165,151002191,-" ; protein_id "ENSP00000310923.5" ; tag basic CCDS ; transcript_id "MINDY1--PRUNE1^ENST00000312210.9" ; transcript_name "MINDY1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MTREX--STK3 HAVANA gene 1001 32193 . + . FI_gene_label "MTREX^ENSG00000039123.16" ; ID "MTREX--STK3^MTREX^ENSG00000039123.16" ; ccdsid "CCDS3967.1" ; exon_id "ENSE00001607330.3" ; exon_number 1 ; gene_id "MTREX--STK3^MTREX^ENSG00000039123.16" ; gene_name MTREX ; gene_type protein_coding ; havana_gene "OTTHUMG00000097019.4" ; havana_transcript "OTTHUMT00000214108.2" ; hgnc_id "HGNC:18734" ; level 2 ; orig_coord_info "chr5,55308014,55308147,+" ; protein_id "ENSP00000230640.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTREX--STK3^ENST00000230640.10" ; transcript_name "MTREX-201" ; transcript_support_level 1 ; transcript_type protein_coding
MTREX--STK3 HAVANA mRNA 1001 32193 . + . FI_gene_label "MTREX^ENSG00000039123.16" ; ID "MTREX--STK3^ENST00000230640.10" ; Parent "MTREX--STK3^MTREX^ENSG00000039123.16" ; ccdsid "CCDS3967.1" ; exon_id "ENSE00001607330.3" ; exon_number 1 ; gene_id "MTREX--STK3^MTREX^ENSG00000039123.16" ; gene_name MTREX ; gene_type protein_coding ; havana_gene "OTTHUMG00000097019.4" ; havana_transcript "OTTHUMT00000214108.2" ; hgnc_id "HGNC:18734" ; level 2 ; orig_coord_info "chr5,55308014,55308147,+" ; protein_id "ENSP00000230640.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTREX--STK3^ENST00000230640.10" ; transcript_name "MTREX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MTREX--STK3 HAVANA gene 45147 66724 . + . FI_gene_label "STK3^ENSG00000104375.17" ; ID "MTREX--STK3^STK3^ENSG00000104375.17" ; ccdsid "CCDS47900.1" ; exon_id "ENSE00001478384.5" ; exon_number 1 ; gene_id "MTREX--STK3^STK3^ENSG00000104375.17" ; gene_name STK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164651.10" ; havana_transcript "OTTHUMT00000379635.3" ; hgnc_id "HGNC:11406" ; level 2 ; orig_coord_info "chr8,98825515,98825540,-" ; protein_id "ENSP00000390500.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTREX--STK3^ENST00000419617.7" ; transcript_name "STK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
MTREX--STK3 HAVANA mRNA 45147 66724 . + . FI_gene_label "STK3^ENSG00000104375.17" ; ID "MTREX--STK3^ENST00000419617.7" ; Parent "MTREX--STK3^STK3^ENSG00000104375.17" ; ccdsid "CCDS47900.1" ; exon_id "ENSE00001478384.5" ; exon_number 1 ; gene_id "MTREX--STK3^STK3^ENSG00000104375.17" ; gene_name STK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164651.10" ; havana_transcript "OTTHUMT00000379635.3" ; hgnc_id "HGNC:11406" ; level 2 ; orig_coord_info "chr8,98825515,98825540,-" ; protein_id "ENSP00000390500.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTREX--STK3^ENST00000419617.7" ; transcript_name "STK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYO18A--AL513321.2 HAVANA gene 1001 48046 . + . FI_gene_label "MYO18A^ENSG00000196535.17" ; ID "MYO18A--AL513321.2^MYO18A^ENSG00000196535.17" ; ccdsid "CCDS45642.1" ; exon_id "ENSE00002189252.1" ; exon_number 2 ; gene_id "MYO18A--AL513321.2^MYO18A^ENSG00000196535.17" ; gene_name MYO18A ; gene_type protein_coding ; havana_gene "OTTHUMG00000166360.11" ; havana_transcript "OTTHUMT00000389396.2" ; hgnc_id "HGNC:31104" ; level 2 ; orig_coord_info "chr17,29165942,29166940,-" ; protein_id "ENSP00000437073.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MYO18A--AL513321.2^ENST00000527372.7" ; transcript_name "MYO18A-202" ; transcript_support_level 1 ; transcript_type protein_coding
MYO18A--AL513321.2 HAVANA mRNA 1001 48046 . + . FI_gene_label "MYO18A^ENSG00000196535.17" ; ID "MYO18A--AL513321.2^ENST00000527372.7" ; Parent "MYO18A--AL513321.2^MYO18A^ENSG00000196535.17" ; ccdsid "CCDS45642.1" ; exon_id "ENSE00002189252.1" ; exon_number 2 ; gene_id "MYO18A--AL513321.2^MYO18A^ENSG00000196535.17" ; gene_name MYO18A ; gene_type protein_coding ; havana_gene "OTTHUMG00000166360.11" ; havana_transcript "OTTHUMT00000389396.2" ; hgnc_id "HGNC:31104" ; level 2 ; orig_coord_info "chr17,29165942,29166940,-" ; protein_id "ENSP00000437073.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MYO18A--AL513321.2^ENST00000527372.7" ; transcript_name "MYO18A-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NEMF--SOS2 HAVANA gene 37522 65990 . + . FI_gene_label "SOS2^ENSG00000100485.12" ; ID "NEMF--SOS2^SOS2^ENSG00000100485.12" ; ccdsid "CCDS9697.1" ; exon_id "ENSE00002525812.2" ; exon_number 1 ; gene_id "NEMF--SOS2^SOS2^ENSG00000100485.12" ; gene_name SOS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140292.5" ; havana_transcript "OTTHUMT00000276878.4" ; hgnc_id "HGNC:11188" ; level 2 ; orig_coord_info "chr14,50231197,50231283,-" ; protein_id "ENSP00000216373.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEMF--SOS2^ENST00000216373.10" ; transcript_name "SOS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NEMF--SOS2 HAVANA mRNA 37522 65990 . + . FI_gene_label "SOS2^ENSG00000100485.12" ; ID "NEMF--SOS2^ENST00000216373.10" ; Parent "NEMF--SOS2^SOS2^ENSG00000100485.12" ; ccdsid "CCDS9697.1" ; exon_id "ENSE00002525812.2" ; exon_number 1 ; gene_id "NEMF--SOS2^SOS2^ENSG00000100485.12" ; gene_name SOS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140292.5" ; havana_transcript "OTTHUMT00000276878.4" ; hgnc_id "HGNC:11188" ; level 2 ; orig_coord_info "chr14,50231197,50231283,-" ; protein_id "ENSP00000216373.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEMF--SOS2^ENST00000216373.10" ; transcript_name "SOS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NEMF--SOS2 HAVANA gene 1034 34521 . + . FI_gene_label "NEMF^ENSG00000165525.18" ; ID "NEMF--SOS2^NEMF^ENSG00000165525.18" ; ccdsid "CCDS9694.1" ; exon_id "ENSE00001253649.4" ; exon_number 1 ; gene_id "NEMF--SOS2^NEMF^ENSG00000165525.18" ; gene_name NEMF ; gene_type protein_coding ; havana_gene "OTTHUMG00000170857.6" ; havana_transcript "OTTHUMT00000410798.4" ; hgnc_id "HGNC:10663" ; level 2 ; orig_coord_info "chr14,49852695,49852753,-" ; protein_id "ENSP00000298310.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEMF--SOS2^ENST00000298310.10" ; transcript_name "NEMF-201" ; transcript_support_level 5 ; transcript_type protein_coding
NEMF--SOS2 HAVANA mRNA 1034 34521 . + . FI_gene_label "NEMF^ENSG00000165525.18" ; ID "NEMF--SOS2^ENST00000298310.10" ; Parent "NEMF--SOS2^NEMF^ENSG00000165525.18" ; ccdsid "CCDS9694.1" ; exon_id "ENSE00001253649.4" ; exon_number 1 ; gene_id "NEMF--SOS2^NEMF^ENSG00000165525.18" ; gene_name NEMF ; gene_type protein_coding ; havana_gene "OTTHUMG00000170857.6" ; havana_transcript "OTTHUMT00000410798.4" ; hgnc_id "HGNC:10663" ; level 2 ; orig_coord_info "chr14,49852695,49852753,-" ; protein_id "ENSP00000298310.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEMF--SOS2^ENST00000298310.10" ; transcript_name "NEMF-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NOL12--LGALS1 HAVANA gene 11362 15528 . + . FI_gene_label "LGALS1^ENSG00000100097.12" ; ID "NOL12--LGALS1^LGALS1^ENSG00000100097.12" ; ccdsid "CCDS13954.1" ; exon_id "ENSE00001045616.4" ; exon_number 1 ; gene_id "NOL12--LGALS1^LGALS1^ENSG00000100097.12" ; gene_name LGALS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150661.2" ; havana_transcript "OTTHUMT00000319482.2" ; hgnc_id "HGNC:6561" ; level 2 ; orig_coord_info "chr22,37675703,37675711,+" ; protein_id "ENSP00000215909.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOL12--LGALS1^ENST00000215909.10" ; transcript_name "LGALS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOL12--LGALS1 HAVANA mRNA 11362 15528 . + . FI_gene_label "LGALS1^ENSG00000100097.12" ; ID "NOL12--LGALS1^ENST00000215909.10" ; Parent "NOL12--LGALS1^LGALS1^ENSG00000100097.12" ; ccdsid "CCDS13954.1" ; exon_id "ENSE00001045616.4" ; exon_number 1 ; gene_id "NOL12--LGALS1^LGALS1^ENSG00000100097.12" ; gene_name LGALS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150661.2" ; havana_transcript "OTTHUMT00000319482.2" ; hgnc_id "HGNC:6561" ; level 2 ; orig_coord_info "chr22,37675703,37675711,+" ; protein_id "ENSP00000215909.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOL12--LGALS1^ENST00000215909.10" ; transcript_name "LGALS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOL12--LGALS1 HAVANA gene 2241 8359 . + . FI_gene_label "NOL12^ENSG00000273899.5" ; ID "NOL12--LGALS1^NOL12^ENSG00000273899.5" ; ccdsid "CCDS13955.1" ; exon_id "ENSE00003850306.1" ; exon_number 1 ; gene_id "NOL12--LGALS1^NOL12^ENSG00000273899.5" ; gene_name NOL12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150660.6" ; havana_transcript "OTTHUMT00000319476.3" ; hgnc_id "HGNC:28585" ; level 2 ; orig_coord_info "chr22,37686393,37686475,+" ; protein_id "ENSP00000352021.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOL12--LGALS1^ENST00000359114.9" ; transcript_name "NOL12-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOL12--LGALS1 HAVANA mRNA 2241 8359 . + . FI_gene_label "NOL12^ENSG00000273899.5" ; ID "NOL12--LGALS1^ENST00000359114.9" ; Parent "NOL12--LGALS1^NOL12^ENSG00000273899.5" ; ccdsid "CCDS13955.1" ; exon_id "ENSE00003850306.1" ; exon_number 1 ; gene_id "NOL12--LGALS1^NOL12^ENSG00000273899.5" ; gene_name NOL12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150660.6" ; havana_transcript "OTTHUMT00000319476.3" ; hgnc_id "HGNC:28585" ; level 2 ; orig_coord_info "chr22,37686393,37686475,+" ; protein_id "ENSP00000352021.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOL12--LGALS1^ENST00000359114.9" ; transcript_name "NOL12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPHP3--ACAD11 HAVANA gene 34363 56719 . + . FI_gene_label "ACAD11^ENSG00000240303.8" ; ID "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; ccdsid "CCDS3074.1" ; exon_id "ENSE00001878063.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; gene_name ACAD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159780.6" ; havana_transcript "OTTHUMT00000357279.4" ; hgnc_id "HGNC:30211" ; level 2 ; orig_coord_info "chr3,132659603,132659751,-" ; protein_id "ENSP00000264990.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000264990.11" ; transcript_name "ACAD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPHP3--ACAD11 HAVANA mRNA 34363 56719 . + . FI_gene_label "ACAD11^ENSG00000240303.8" ; ID "NPHP3--ACAD11^ENST00000264990.11" ; Parent "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; ccdsid "CCDS3074.1" ; exon_id "ENSE00001878063.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; gene_name ACAD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159780.6" ; havana_transcript "OTTHUMT00000357279.4" ; hgnc_id "HGNC:30211" ; level 2 ; orig_coord_info "chr3,132659603,132659751,-" ; protein_id "ENSP00000264990.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000264990.11" ; transcript_name "ACAD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPHP3--ACAD11 HAVANA gene 1006 31089 . + . FI_gene_label "NPHP3^ENSG00000113971.20" ; ID "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; ccdsid "CCDS3078.1" ; exon_id "ENSE00001810363.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; gene_name NPHP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159713.4" ; havana_transcript "OTTHUMT00000357020.3" ; hgnc_id "HGNC:7907" ; level 2 ; orig_coord_info "chr3,132721963,132722355,-" ; protein_id "ENSP00000338766.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000337331.10" ; transcript_name "NPHP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPHP3--ACAD11 HAVANA mRNA 1006 31089 . + . FI_gene_label "NPHP3^ENSG00000113971.20" ; ID "NPHP3--ACAD11^ENST00000337331.10" ; Parent "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; ccdsid "CCDS3078.1" ; exon_id "ENSE00001810363.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; gene_name NPHP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159713.4" ; havana_transcript "OTTHUMT00000357020.3" ; hgnc_id "HGNC:7907" ; level 2 ; orig_coord_info "chr3,132721963,132722355,-" ; protein_id "ENSP00000338766.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000337331.10" ; transcript_name "NPHP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR1I3--TOMM40L HAVANA gene 2238 7756 . + . FI_gene_label "NR1I3^ENSG00000143257.12" ; ID "NR1I3--TOMM40L^NR1I3^ENSG00000143257.12" ; ccdsid "CCDS41429.1" ; exon_id "ENSE00002035547.1" ; exon_number 1 ; gene_id "NR1I3--TOMM40L^NR1I3^ENSG00000143257.12" ; gene_name NR1I3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034347.3" ; havana_transcript "OTTHUMT00000359195.2" ; hgnc_id "HGNC:7969" ; level 2 ; orig_coord_info "chr1,161236459,161236565,-" ; protein_id "ENSP00000356958.2" ; tag basic CCDS ; transcript_id "NR1I3--TOMM40L^ENST00000367979.6" ; transcript_name "NR1I3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NR1I3--TOMM40L HAVANA mRNA 2238 7756 . + . FI_gene_label "NR1I3^ENSG00000143257.12" ; ID "NR1I3--TOMM40L^ENST00000367979.6" ; Parent "NR1I3--TOMM40L^NR1I3^ENSG00000143257.12" ; ccdsid "CCDS41429.1" ; exon_id "ENSE00002035547.1" ; exon_number 1 ; gene_id "NR1I3--TOMM40L^NR1I3^ENSG00000143257.12" ; gene_name NR1I3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034347.3" ; havana_transcript "OTTHUMT00000359195.2" ; hgnc_id "HGNC:7969" ; level 2 ; orig_coord_info "chr1,161236459,161236565,-" ; protein_id "ENSP00000356958.2" ; tag basic CCDS ; transcript_id "NR1I3--TOMM40L^ENST00000367979.6" ; transcript_name "NR1I3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR1I3--TOMM40L HAVANA gene 11253 15567 . + . FI_gene_label "TOMM40L^ENSG00000158882.15" ; ID "NR1I3--TOMM40L^TOMM40L^ENSG00000158882.15" ; ccdsid "CCDS1227.1" ; exon_id "ENSE00001446068.1" ; exon_number 1 ; gene_id "NR1I3--TOMM40L^TOMM40L^ENSG00000158882.15" ; gene_name TOMM40L ; gene_type protein_coding ; havana_gene "OTTHUMG00000034345.2" ; havana_transcript "OTTHUMT00000083030.1" ; hgnc_id "HGNC:25756" ; level 2 ; orig_coord_info "chr1,161226490,161226604,+" ; protein_id "ENSP00000356966.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "NR1I3--TOMM40L^ENST00000367987.1" ; transcript_name "TOMM40L-201" ; transcript_support_level 1 ; transcript_type protein_coding
NR1I3--TOMM40L HAVANA mRNA 11253 15567 . + . FI_gene_label "TOMM40L^ENSG00000158882.15" ; ID "NR1I3--TOMM40L^ENST00000367987.1" ; Parent "NR1I3--TOMM40L^TOMM40L^ENSG00000158882.15" ; ccdsid "CCDS1227.1" ; exon_id "ENSE00001446068.1" ; exon_number 1 ; gene_id "NR1I3--TOMM40L^TOMM40L^ENSG00000158882.15" ; gene_name TOMM40L ; gene_type protein_coding ; havana_gene "OTTHUMG00000034345.2" ; havana_transcript "OTTHUMT00000083030.1" ; hgnc_id "HGNC:25756" ; level 2 ; orig_coord_info "chr1,161226490,161226604,+" ; protein_id "ENSP00000356966.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "NR1I3--TOMM40L^ENST00000367987.1" ; transcript_name "TOMM40L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PANK2--AP000866.1 HAVANA gene 1085 18641 . + . FI_gene_label "PANK2^ENSG00000125779.23" ; ID "PANK2--AP000866.1^PANK2^ENSG00000125779.23" ; ccdsid "CCDS13071.2" ; exon_id "ENSE00001481494.2" ; exon_number 1 ; gene_id "PANK2--AP000866.1^PANK2^ENSG00000125779.23" ; gene_name PANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031768.7" ; havana_transcript "OTTHUMT00000077793.2" ; hgnc_id "HGNC:15894" ; level 2 ; orig_coord_info "chr20,3889101,3889728,+" ; protein_id "ENSP00000313377.4" ; tag basic appris_principal_2 CCDS ; transcript_id "PANK2--AP000866.1^ENST00000316562.9" ; transcript_name "PANK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PANK2--AP000866.1 HAVANA mRNA 1085 18641 . + . FI_gene_label "PANK2^ENSG00000125779.23" ; ID "PANK2--AP000866.1^ENST00000316562.9" ; Parent "PANK2--AP000866.1^PANK2^ENSG00000125779.23" ; ccdsid "CCDS13071.2" ; exon_id "ENSE00001481494.2" ; exon_number 1 ; gene_id "PANK2--AP000866.1^PANK2^ENSG00000125779.23" ; gene_name PANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031768.7" ; havana_transcript "OTTHUMT00000077793.2" ; hgnc_id "HGNC:15894" ; level 2 ; orig_coord_info "chr20,3889101,3889728,+" ; protein_id "ENSP00000313377.4" ; tag basic appris_principal_2 CCDS ; transcript_id "PANK2--AP000866.1^ENST00000316562.9" ; transcript_name "PANK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PARVA--USP47 HAVANA gene 1009 26099 . + . FI_gene_label "PARVA^ENSG00000197702.14" ; ID "PARVA--USP47^PARVA^ENSG00000197702.14" ; exon_id "ENSE00003840507.2" ; exon_number 1 ; gene_id "PARVA--USP47^PARVA^ENSG00000197702.14" ; gene_name PARVA ; gene_type protein_coding ; havana_gene "OTTHUMG00000165778.6" ; havana_transcript "OTTHUMT00000386165.5" ; hgnc_id "HGNC:14652" ; level 2 ; orig_coord_info "chr11,12377648,12377783,+" ; protein_id "ENSP00000334008.9" ; tag upstream_ATG basic MANE_Select appris_principal_1 ; transcript_id "PARVA--USP47^ENST00000334956.15" ; transcript_name "PARVA-201" ; transcript_support_level 1 ; transcript_type protein_coding
PARVA--USP47 HAVANA mRNA 1009 26099 . + . FI_gene_label "PARVA^ENSG00000197702.14" ; ID "PARVA--USP47^ENST00000334956.15" ; Parent "PARVA--USP47^PARVA^ENSG00000197702.14" ; exon_id "ENSE00003840507.2" ; exon_number 1 ; gene_id "PARVA--USP47^PARVA^ENSG00000197702.14" ; gene_name PARVA ; gene_type protein_coding ; havana_gene "OTTHUMG00000165778.6" ; havana_transcript "OTTHUMT00000386165.5" ; hgnc_id "HGNC:14652" ; level 2 ; orig_coord_info "chr11,12377648,12377783,+" ; protein_id "ENSP00000334008.9" ; tag upstream_ATG basic MANE_Select appris_principal_1 ; transcript_id "PARVA--USP47^ENST00000334956.15" ; transcript_name "PARVA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PARVA--USP47 HAVANA gene 29100 63514 . + . FI_gene_label "USP47^ENSG00000170242.19" ; ID "PARVA--USP47^USP47^ENSG00000170242.19" ; ccdsid "CCDS41619.1" ; exon_id "ENSE00001406563.1" ; exon_number 1 ; gene_id "PARVA--USP47^USP47^ENSG00000170242.19" ; gene_name USP47 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165685.6" ; havana_transcript "OTTHUMT00000385793.2" ; hgnc_id "HGNC:20076" ; level 2 ; orig_coord_info "chr11,11842186,11842224,+" ; protein_id "ENSP00000339957.5" ; tag basic CCDS ; transcript_id "PARVA--USP47^ENST00000339865.9" ; transcript_name "USP47-202" ; transcript_support_level 2 ; transcript_type protein_coding
PARVA--USP47 HAVANA mRNA 29100 63514 . + . FI_gene_label "USP47^ENSG00000170242.19" ; ID "PARVA--USP47^ENST00000339865.9" ; Parent "PARVA--USP47^USP47^ENSG00000170242.19" ; ccdsid "CCDS41619.1" ; exon_id "ENSE00001406563.1" ; exon_number 1 ; gene_id "PARVA--USP47^USP47^ENSG00000170242.19" ; gene_name USP47 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165685.6" ; havana_transcript "OTTHUMT00000385793.2" ; hgnc_id "HGNC:20076" ; level 2 ; orig_coord_info "chr11,11842186,11842224,+" ; protein_id "ENSP00000339957.5" ; tag basic CCDS ; transcript_id "PARVA--USP47^ENST00000339865.9" ; transcript_name "USP47-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PEBP1--UTP20 HAVANA gene 1001 5733 . + . FI_gene_label "PEBP1^ENSG00000089220.5" ; ID "PEBP1--UTP20^PEBP1^ENSG00000089220.5" ; ccdsid "CCDS9187.1" ; exon_id "ENSE00000940085.7" ; exon_number 1 ; gene_id "PEBP1--UTP20^PEBP1^ENSG00000089220.5" ; gene_name PEBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168860.2" ; havana_transcript "OTTHUMT00000401405.2" ; hgnc_id "HGNC:8630" ; level 2 ; orig_coord_info "chr12,118136210,118136344,+" ; protein_id "ENSP00000261313.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PEBP1--UTP20^ENST00000261313.3" ; transcript_name "PEBP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PEBP1--UTP20 HAVANA mRNA 1001 5733 . + . FI_gene_label "PEBP1^ENSG00000089220.5" ; ID "PEBP1--UTP20^ENST00000261313.3" ; Parent "PEBP1--UTP20^PEBP1^ENSG00000089220.5" ; ccdsid "CCDS9187.1" ; exon_id "ENSE00000940085.7" ; exon_number 1 ; gene_id "PEBP1--UTP20^PEBP1^ENSG00000089220.5" ; gene_name PEBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168860.2" ; havana_transcript "OTTHUMT00000401405.2" ; hgnc_id "HGNC:8630" ; level 2 ; orig_coord_info "chr12,118136210,118136344,+" ; protein_id "ENSP00000261313.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PEBP1--UTP20^ENST00000261313.3" ; transcript_name "PEBP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PEBP1--UTP20 HAVANA gene 8734 65514 . + . FI_gene_label "UTP20^ENSG00000120800.5" ; ID "PEBP1--UTP20^UTP20^ENSG00000120800.5" ; ccdsid "CCDS9081.1" ; exon_id "ENSE00002333153.2" ; exon_number 1 ; gene_id "PEBP1--UTP20^UTP20^ENSG00000120800.5" ; gene_name UTP20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170270.2" ; havana_transcript "OTTHUMT00000408242.2" ; hgnc_id "HGNC:17897" ; level 2 ; orig_coord_info "chr12,101280283,101280327,+" ; protein_id "ENSP00000261637.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PEBP1--UTP20^ENST00000261637.5" ; transcript_name "UTP20-201" ; transcript_support_level 1 ; transcript_type protein_coding
PEBP1--UTP20 HAVANA mRNA 8734 65514 . + . FI_gene_label "UTP20^ENSG00000120800.5" ; ID "PEBP1--UTP20^ENST00000261637.5" ; Parent "PEBP1--UTP20^UTP20^ENSG00000120800.5" ; ccdsid "CCDS9081.1" ; exon_id "ENSE00002333153.2" ; exon_number 1 ; gene_id "PEBP1--UTP20^UTP20^ENSG00000120800.5" ; gene_name UTP20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170270.2" ; havana_transcript "OTTHUMT00000408242.2" ; hgnc_id "HGNC:17897" ; level 2 ; orig_coord_info "chr12,101280283,101280327,+" ; protein_id "ENSP00000261637.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PEBP1--UTP20^ENST00000261637.5" ; transcript_name "UTP20-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PEMT--RAI1 HAVANA gene 1001 13716 . + . FI_gene_label "PEMT^ENSG00000133027.18" ; ID "PEMT--RAI1^PEMT^ENSG00000133027.18" ; ccdsid "CCDS11186.1" ; exon_id "ENSE00002267547.1" ; exon_number 1 ; gene_id "PEMT--RAI1^PEMT^ENSG00000133027.18" ; gene_name PEMT ; gene_type protein_coding ; havana_gene "OTTHUMG00000059290.6" ; havana_transcript "OTTHUMT00000131656.2" ; hgnc_id "HGNC:8830" ; level 2 ; orig_coord_info "chr17,17591531,17591626,-" ; protein_id "ENSP00000255389.5" ; tag basic MANE_Select CCDS ; transcript_id "PEMT--RAI1^ENST00000255389.10" ; transcript_name "PEMT-201" ; transcript_support_level 1 ; transcript_type protein_coding
PEMT--RAI1 HAVANA mRNA 1001 13716 . + . FI_gene_label "PEMT^ENSG00000133027.18" ; ID "PEMT--RAI1^ENST00000255389.10" ; Parent "PEMT--RAI1^PEMT^ENSG00000133027.18" ; ccdsid "CCDS11186.1" ; exon_id "ENSE00002267547.1" ; exon_number 1 ; gene_id "PEMT--RAI1^PEMT^ENSG00000133027.18" ; gene_name PEMT ; gene_type protein_coding ; havana_gene "OTTHUMG00000059290.6" ; havana_transcript "OTTHUMT00000131656.2" ; hgnc_id "HGNC:8830" ; level 2 ; orig_coord_info "chr17,17591531,17591626,-" ; protein_id "ENSP00000255389.5" ; tag basic MANE_Select CCDS ; transcript_id "PEMT--RAI1^ENST00000255389.10" ; transcript_name "PEMT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PEMT--RAI1 HAVANA gene 16717 33637 . + . FI_gene_label "RAI1^ENSG00000108557.19" ; ID "PEMT--RAI1^RAI1^ENSG00000108557.19" ; ccdsid "CCDS11188.1" ; exon_id "ENSE00001291642.2" ; exon_number 3 ; gene_id "PEMT--RAI1^RAI1^ENSG00000108557.19" ; gene_name RAI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059314.4" ; havana_transcript "OTTHUMT00000131775.2" ; hgnc_id "HGNC:9834" ; level 2 ; orig_coord_info "chr17,17792949,17798513,+" ; protein_id "ENSP00000323074.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PEMT--RAI1^ENST00000353383.6" ; transcript_name "RAI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PEMT--RAI1 HAVANA mRNA 16717 33637 . + . FI_gene_label "RAI1^ENSG00000108557.19" ; ID "PEMT--RAI1^ENST00000353383.6" ; Parent "PEMT--RAI1^RAI1^ENSG00000108557.19" ; ccdsid "CCDS11188.1" ; exon_id "ENSE00001291642.2" ; exon_number 3 ; gene_id "PEMT--RAI1^RAI1^ENSG00000108557.19" ; gene_name RAI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059314.4" ; havana_transcript "OTTHUMT00000131775.2" ; hgnc_id "HGNC:9834" ; level 2 ; orig_coord_info "chr17,17792949,17798513,+" ; protein_id "ENSP00000323074.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PEMT--RAI1^ENST00000353383.6" ; transcript_name "RAI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLXNB2--VEGFB HAVANA gene 22890 27570 . + . FI_gene_label "VEGFB^ENSG00000173511.10" ; ID "PLXNB2--VEGFB^VEGFB^ENSG00000173511.10" ; ccdsid "CCDS8062.1" ; exon_id "ENSE00002297940.2" ; exon_number 1 ; gene_id "PLXNB2--VEGFB^VEGFB^ENSG00000173511.10" ; gene_name VEGFB ; gene_type protein_coding ; havana_gene "OTTHUMG00000167813.3" ; havana_transcript "OTTHUMT00000396393.3" ; hgnc_id "HGNC:12681" ; level 2 ; orig_coord_info "chr11,64234834,64234893,+" ; protein_id "ENSP00000311127.2" ; tag basic MANE_Select CCDS ; transcript_id "PLXNB2--VEGFB^ENST00000309422.7" ; transcript_name "VEGFB-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLXNB2--VEGFB HAVANA mRNA 22890 27570 . + . FI_gene_label "VEGFB^ENSG00000173511.10" ; ID "PLXNB2--VEGFB^ENST00000309422.7" ; Parent "PLXNB2--VEGFB^VEGFB^ENSG00000173511.10" ; ccdsid "CCDS8062.1" ; exon_id "ENSE00002297940.2" ; exon_number 1 ; gene_id "PLXNB2--VEGFB^VEGFB^ENSG00000173511.10" ; gene_name VEGFB ; gene_type protein_coding ; havana_gene "OTTHUMG00000167813.3" ; havana_transcript "OTTHUMT00000396393.3" ; hgnc_id "HGNC:12681" ; level 2 ; orig_coord_info "chr11,64234834,64234893,+" ; protein_id "ENSP00000311127.2" ; tag basic MANE_Select CCDS ; transcript_id "PLXNB2--VEGFB^ENST00000309422.7" ; transcript_name "VEGFB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLXNB2--VEGFB HAVANA gene 1001 19889 . + . FI_gene_label "PLXNB2^ENSG00000196576.16" ; ID "PLXNB2--VEGFB^PLXNB2^ENSG00000196576.16" ; ccdsid "CCDS43035.1" ; exon_id "ENSE00003893219.1" ; exon_number 3 ; gene_id "PLXNB2--VEGFB^PLXNB2^ENSG00000196576.16" ; gene_name PLXNB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150219.10" ; havana_transcript "OTTHUMT00000504274.2" ; hgnc_id "HGNC:9104" ; level 2 ; orig_coord_info "chr22,50289517,50290584,-" ; protein_id "ENSP00000352288.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLXNB2--VEGFB^ENST00000359337.9" ; transcript_name "PLXNB2-201" ; transcript_support_level 5 ; transcript_type protein_coding
PLXNB2--VEGFB HAVANA mRNA 1001 19889 . + . FI_gene_label "PLXNB2^ENSG00000196576.16" ; ID "PLXNB2--VEGFB^ENST00000359337.9" ; Parent "PLXNB2--VEGFB^PLXNB2^ENSG00000196576.16" ; ccdsid "CCDS43035.1" ; exon_id "ENSE00003893219.1" ; exon_number 3 ; gene_id "PLXNB2--VEGFB^PLXNB2^ENSG00000196576.16" ; gene_name PLXNB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150219.10" ; havana_transcript "OTTHUMT00000504274.2" ; hgnc_id "HGNC:9104" ; level 2 ; orig_coord_info "chr22,50289517,50290584,-" ; protein_id "ENSP00000352288.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLXNB2--VEGFB^ENST00000359337.9" ; transcript_name "PLXNB2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PPP3CB-AS1--TMEM254 HAVANA gene 17218 23841 . + . FI_gene_label "TMEM254^ENSG00000133678.14" ; ID "PPP3CB-AS1--TMEM254^TMEM254^ENSG00000133678.14" ; exon_id "ENSE00001457395.3" ; exon_number 1 ; gene_id "PPP3CB-AS1--TMEM254^TMEM254^ENSG00000133678.14" ; gene_name TMEM254 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018602.2" ; havana_transcript "OTTHUMT00000049031.1" ; hgnc_id "HGNC:25804" ; level 2 ; orig_coord_info "chr10,80079036,80079184,+" ; protein_id "ENSP00000361347.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "PPP3CB-AS1--TMEM254^ENST00000372273.7" ; transcript_name "TMEM254-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP3CB-AS1--TMEM254 HAVANA mRNA 17218 23841 . + . FI_gene_label "TMEM254^ENSG00000133678.14" ; ID "PPP3CB-AS1--TMEM254^ENST00000372273.7" ; Parent "PPP3CB-AS1--TMEM254^TMEM254^ENSG00000133678.14" ; exon_id "ENSE00001457395.3" ; exon_number 1 ; gene_id "PPP3CB-AS1--TMEM254^TMEM254^ENSG00000133678.14" ; gene_name TMEM254 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018602.2" ; havana_transcript "OTTHUMT00000049031.1" ; hgnc_id "HGNC:25804" ; level 2 ; orig_coord_info "chr10,80079036,80079184,+" ; protein_id "ENSP00000361347.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "PPP3CB-AS1--TMEM254^ENST00000372273.7" ; transcript_name "TMEM254-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP3R1--AC087491.1 HAVANA gene 2183 10942 . + . FI_gene_label "PPP3R1^ENSG00000221823.11" ; ID "PPP3R1--AC087491.1^PPP3R1^ENSG00000221823.11" ; ccdsid "CCDS46310.1" ; exon_id "ENSE00001191356.5" ; exon_number 1 ; gene_id "PPP3R1--AC087491.1^PPP3R1^ENSG00000221823.11" ; gene_name PPP3R1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129561.9" ; havana_transcript "OTTHUMT00000326765.5" ; hgnc_id "HGNC:9317" ; level 2 ; orig_coord_info "chr2,68252125,68252127,-" ; protein_id "ENSP00000234310.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP3R1--AC087491.1^ENST00000234310.8" ; transcript_name "PPP3R1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP3R1--AC087491.1 HAVANA mRNA 2183 10942 . + . FI_gene_label "PPP3R1^ENSG00000221823.11" ; ID "PPP3R1--AC087491.1^ENST00000234310.8" ; Parent "PPP3R1--AC087491.1^PPP3R1^ENSG00000221823.11" ; ccdsid "CCDS46310.1" ; exon_id "ENSE00001191356.5" ; exon_number 1 ; gene_id "PPP3R1--AC087491.1^PPP3R1^ENSG00000221823.11" ; gene_name PPP3R1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129561.9" ; havana_transcript "OTTHUMT00000326765.5" ; hgnc_id "HGNC:9317" ; level 2 ; orig_coord_info "chr2,68252125,68252127,-" ; protein_id "ENSP00000234310.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP3R1--AC087491.1^ENST00000234310.8" ; transcript_name "PPP3R1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP3R1--NEUROD2 HAVANA gene 2183 10942 . + . FI_gene_label "PPP3R1^ENSG00000221823.11" ; ID "PPP3R1--NEUROD2^PPP3R1^ENSG00000221823.11" ; ccdsid "CCDS46310.1" ; exon_id "ENSE00001191356.5" ; exon_number 1 ; gene_id "PPP3R1--NEUROD2^PPP3R1^ENSG00000221823.11" ; gene_name PPP3R1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129561.9" ; havana_transcript "OTTHUMT00000326765.5" ; hgnc_id "HGNC:9317" ; level 2 ; orig_coord_info "chr2,68252125,68252127,-" ; protein_id "ENSP00000234310.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP3R1--NEUROD2^ENST00000234310.8" ; transcript_name "PPP3R1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP3R1--NEUROD2 HAVANA mRNA 2183 10942 . + . FI_gene_label "PPP3R1^ENSG00000221823.11" ; ID "PPP3R1--NEUROD2^ENST00000234310.8" ; Parent "PPP3R1--NEUROD2^PPP3R1^ENSG00000221823.11" ; ccdsid "CCDS46310.1" ; exon_id "ENSE00001191356.5" ; exon_number 1 ; gene_id "PPP3R1--NEUROD2^PPP3R1^ENSG00000221823.11" ; gene_name PPP3R1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129561.9" ; havana_transcript "OTTHUMT00000326765.5" ; hgnc_id "HGNC:9317" ; level 2 ; orig_coord_info "chr2,68252125,68252127,-" ; protein_id "ENSP00000234310.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP3R1--NEUROD2^ENST00000234310.8" ; transcript_name "PPP3R1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP3R1--NEUROD2 HAVANA gene 15800 19952 . + . FI_gene_label "NEUROD2^ENSG00000171532.5" ; ID "PPP3R1--NEUROD2^NEUROD2^ENSG00000171532.5" ; ccdsid "CCDS11338.1" ; exon_id "ENSE00001201196.6" ; exon_number 2 ; gene_id "PPP3R1--NEUROD2^NEUROD2^ENSG00000171532.5" ; gene_name NEUROD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133211.3" ; havana_transcript "OTTHUMT00000256931.3" ; hgnc_id "HGNC:7763" ; level 2 ; orig_coord_info "chr17,39605454,39606599,-" ; protein_id "ENSP00000306754.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP3R1--NEUROD2^ENST00000302584.5" ; transcript_name "NEUROD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP3R1--NEUROD2 HAVANA mRNA 15800 19952 . + . FI_gene_label "NEUROD2^ENSG00000171532.5" ; ID "PPP3R1--NEUROD2^ENST00000302584.5" ; Parent "PPP3R1--NEUROD2^NEUROD2^ENSG00000171532.5" ; ccdsid "CCDS11338.1" ; exon_id "ENSE00001201196.6" ; exon_number 2 ; gene_id "PPP3R1--NEUROD2^NEUROD2^ENSG00000171532.5" ; gene_name NEUROD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133211.3" ; havana_transcript "OTTHUMT00000256931.3" ; hgnc_id "HGNC:7763" ; level 2 ; orig_coord_info "chr17,39605454,39606599,-" ; protein_id "ENSP00000306754.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP3R1--NEUROD2^ENST00000302584.5" ; transcript_name "NEUROD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRPF18--ALCAM HAVANA gene 15087 39249 . + . FI_gene_label "ALCAM^ENSG00000170017.12" ; ID "PRPF18--ALCAM^ALCAM^ENSG00000170017.12" ; ccdsid "CCDS33810.1" ; exon_id "ENSE00001938712.1" ; exon_number 1 ; gene_id "PRPF18--ALCAM^ALCAM^ENSG00000170017.12" ; gene_name ALCAM ; gene_type protein_coding ; havana_gene "OTTHUMG00000159192.2" ; havana_transcript "OTTHUMT00000353764.1" ; hgnc_id "HGNC:400" ; level 2 ; orig_coord_info "chr3,105367409,105367481,+" ; protein_id "ENSP00000305988.5" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "PRPF18--ALCAM^ENST00000306107.9" ; transcript_name "ALCAM-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRPF18--ALCAM HAVANA mRNA 15087 39249 . + . FI_gene_label "ALCAM^ENSG00000170017.12" ; ID "PRPF18--ALCAM^ENST00000306107.9" ; Parent "PRPF18--ALCAM^ALCAM^ENSG00000170017.12" ; ccdsid "CCDS33810.1" ; exon_id "ENSE00001938712.1" ; exon_number 1 ; gene_id "PRPF18--ALCAM^ALCAM^ENSG00000170017.12" ; gene_name ALCAM ; gene_type protein_coding ; havana_gene "OTTHUMG00000159192.2" ; havana_transcript "OTTHUMT00000353764.1" ; hgnc_id "HGNC:400" ; level 2 ; orig_coord_info "chr3,105367409,105367481,+" ; protein_id "ENSP00000305988.5" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "PRPF18--ALCAM^ENST00000306107.9" ; transcript_name "ALCAM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRPF18--ALCAM HAVANA gene 1030 7953 . + . FI_gene_label "PRPF18^ENSG00000165630.14" ; ID "PRPF18--ALCAM^PRPF18^ENSG00000165630.14" ; exon_id "ENSE00001221275.3" ; exon_number 2 ; gene_id "PRPF18--ALCAM^PRPF18^ENSG00000165630.14" ; gene_name PRPF18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017702.3" ; havana_transcript "OTTHUMT00000046880.2" ; hgnc_id "HGNC:17351" ; level 2 ; orig_coord_info "chr10,13591868,13591888,+" ; protein_id "ENSP00000367824.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PRPF18--ALCAM^ENST00000320054.4" ; transcript_name "PRPF18-201" ; transcript_support_level 5 ; transcript_type protein_coding
PRPF18--ALCAM HAVANA mRNA 1030 7953 . + . FI_gene_label "PRPF18^ENSG00000165630.14" ; ID "PRPF18--ALCAM^ENST00000320054.4" ; Parent "PRPF18--ALCAM^PRPF18^ENSG00000165630.14" ; exon_id "ENSE00001221275.3" ; exon_number 2 ; gene_id "PRPF18--ALCAM^PRPF18^ENSG00000165630.14" ; gene_name PRPF18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017702.3" ; havana_transcript "OTTHUMT00000046880.2" ; hgnc_id "HGNC:17351" ; level 2 ; orig_coord_info "chr10,13591868,13591888,+" ; protein_id "ENSP00000367824.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PRPF18--ALCAM^ENST00000320054.4" ; transcript_name "PRPF18-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RABEP1--ITGAE HAVANA gene 30857 63733 . + . FI_gene_label "ITGAE^ENSG00000083457.12" ; ID "RABEP1--ITGAE^ITGAE^ENSG00000083457.12" ; ccdsid "CCDS32531.1" ; exon_id "ENSE00001356766.4" ; exon_number 1 ; gene_id "RABEP1--ITGAE^ITGAE^ENSG00000083457.12" ; gene_name ITGAE ; gene_type protein_coding ; havana_gene "OTTHUMG00000177634.4" ; havana_transcript "OTTHUMT00000438169.2" ; hgnc_id "HGNC:6147" ; level 2 ; orig_coord_info "chr17,3801111,3801144,-" ; protein_id "ENSP00000263087.4" ; tag upstream_ATG basic MANE_Select appris_principal_1 CCDS ; transcript_id "RABEP1--ITGAE^ENST00000263087.9" ; transcript_name "ITGAE-201" ; transcript_support_level 1 ; transcript_type protein_coding
RABEP1--ITGAE HAVANA mRNA 30857 63733 . + . FI_gene_label "ITGAE^ENSG00000083457.12" ; ID "RABEP1--ITGAE^ENST00000263087.9" ; Parent "RABEP1--ITGAE^ITGAE^ENSG00000083457.12" ; ccdsid "CCDS32531.1" ; exon_id "ENSE00001356766.4" ; exon_number 1 ; gene_id "RABEP1--ITGAE^ITGAE^ENSG00000083457.12" ; gene_name ITGAE ; gene_type protein_coding ; havana_gene "OTTHUMG00000177634.4" ; havana_transcript "OTTHUMT00000438169.2" ; hgnc_id "HGNC:6147" ; level 2 ; orig_coord_info "chr17,3801111,3801144,-" ; protein_id "ENSP00000263087.4" ; tag upstream_ATG basic MANE_Select appris_principal_1 CCDS ; transcript_id "RABEP1--ITGAE^ENST00000263087.9" ; transcript_name "ITGAE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RABEP1--ITGAE HAVANA gene 1223 24739 . + . FI_gene_label "RABEP1^ENSG00000029725.17" ; ID "RABEP1--ITGAE^RABEP1^ENSG00000029725.17" ; ccdsid "CCDS42243.1" ; exon_id "ENSE00002653440.1" ; exon_number 1 ; gene_id "RABEP1--ITGAE^RABEP1^ENSG00000029725.17" ; gene_name RABEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177870.6" ; havana_transcript "OTTHUMT00000439351.2" ; hgnc_id "HGNC:17677" ; level 2 ; orig_coord_info "chr17,5282487,5282520,+" ; protein_id "ENSP00000339569.6" ; tag basic CCDS ; transcript_id "RABEP1--ITGAE^ENST00000341923.10" ; transcript_name "RABEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RABEP1--ITGAE HAVANA mRNA 1223 24739 . + . FI_gene_label "RABEP1^ENSG00000029725.17" ; ID "RABEP1--ITGAE^ENST00000341923.10" ; Parent "RABEP1--ITGAE^RABEP1^ENSG00000029725.17" ; ccdsid "CCDS42243.1" ; exon_id "ENSE00002653440.1" ; exon_number 1 ; gene_id "RABEP1--ITGAE^RABEP1^ENSG00000029725.17" ; gene_name RABEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177870.6" ; havana_transcript "OTTHUMT00000439351.2" ; hgnc_id "HGNC:17677" ; level 2 ; orig_coord_info "chr17,5282487,5282520,+" ; protein_id "ENSP00000339569.6" ; tag basic CCDS ; transcript_id "RABEP1--ITGAE^ENST00000341923.10" ; transcript_name "RABEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
REV1--TSGA10 HAVANA gene 1019 29489 . + . FI_gene_label "REV1^ENSG00000135945.10" ; ID "REV1--TSGA10^REV1^ENSG00000135945.10" ; ccdsid "CCDS2045.1" ; exon_id "ENSE00000921861.3" ; exon_number 2 ; gene_id "REV1--TSGA10^REV1^ENSG00000135945.10" ; gene_name REV1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130636.4" ; havana_transcript "OTTHUMT00000253123.3" ; hgnc_id "HGNC:14060" ; level 2 ; orig_coord_info "chr2,99464922,99464975,-" ; protein_id "ENSP00000258428.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "REV1--TSGA10^ENST00000258428.8" ; transcript_name "REV1-201" ; transcript_support_level 1 ; transcript_type protein_coding
REV1--TSGA10 HAVANA mRNA 1019 29489 . + . FI_gene_label "REV1^ENSG00000135945.10" ; ID "REV1--TSGA10^ENST00000258428.8" ; Parent "REV1--TSGA10^REV1^ENSG00000135945.10" ; ccdsid "CCDS2045.1" ; exon_id "ENSE00000921861.3" ; exon_number 2 ; gene_id "REV1--TSGA10^REV1^ENSG00000135945.10" ; gene_name REV1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130636.4" ; havana_transcript "OTTHUMT00000253123.3" ; hgnc_id "HGNC:14060" ; level 2 ; orig_coord_info "chr2,99464922,99464975,-" ; protein_id "ENSP00000258428.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "REV1--TSGA10^ENST00000258428.8" ; transcript_name "REV1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
REV1--TSGA10 HAVANA gene 35251 59227 . + . FI_gene_label "TSGA10^ENSG00000135951.16" ; ID "REV1--TSGA10^TSGA10^ENSG00000135951.16" ; ccdsid "CCDS2037.1" ; exon_id "ENSE00001200168.3" ; exon_number 5 ; gene_id "REV1--TSGA10^TSGA10^ENSG00000135951.16" ; gene_name TSGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130637.5" ; havana_transcript "OTTHUMT00000329915.1" ; hgnc_id "HGNC:14927" ; level 2 ; orig_coord_info "chr2,99109389,99109439,-" ; protein_id "ENSP00000347161.4" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "REV1--TSGA10^ENST00000355053.8" ; transcript_name "TSGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
REV1--TSGA10 HAVANA mRNA 35251 59227 . + . FI_gene_label "TSGA10^ENSG00000135951.16" ; ID "REV1--TSGA10^ENST00000355053.8" ; Parent "REV1--TSGA10^TSGA10^ENSG00000135951.16" ; ccdsid "CCDS2037.1" ; exon_id "ENSE00001200168.3" ; exon_number 5 ; gene_id "REV1--TSGA10^TSGA10^ENSG00000135951.16" ; gene_name TSGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130637.5" ; havana_transcript "OTTHUMT00000329915.1" ; hgnc_id "HGNC:14927" ; level 2 ; orig_coord_info "chr2,99109389,99109439,-" ; protein_id "ENSP00000347161.4" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "REV1--TSGA10^ENST00000355053.8" ; transcript_name "TSGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RFX5--RFX5-AS1 HAVANA gene 1076 7687 . + . FI_gene_label "RFX5^ENSG00000143390.18" ; ID "RFX5--RFX5-AS1^RFX5^ENSG00000143390.18" ; ccdsid "CCDS994.1" ; exon_id "ENSE00003532823.1" ; exon_number 3 ; gene_id "RFX5--RFX5-AS1^RFX5^ENSG00000143390.18" ; gene_name RFX5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012495.24" ; havana_transcript "OTTHUMT00000034892.6" ; hgnc_id "HGNC:9986" ; level 2 ; orig_coord_info "chr1,151346205,151346320,-" ; protein_id "ENSP00000290524.4" ; tag basic appris_principal_1 CCDS ; transcript_id "RFX5--RFX5-AS1^ENST00000290524.8" ; transcript_name "RFX5-201" ; transcript_support_level 1 ; transcript_type protein_coding
RFX5--RFX5-AS1 HAVANA mRNA 1076 7687 . + . FI_gene_label "RFX5^ENSG00000143390.18" ; ID "RFX5--RFX5-AS1^ENST00000290524.8" ; Parent "RFX5--RFX5-AS1^RFX5^ENSG00000143390.18" ; ccdsid "CCDS994.1" ; exon_id "ENSE00003532823.1" ; exon_number 3 ; gene_id "RFX5--RFX5-AS1^RFX5^ENSG00000143390.18" ; gene_name RFX5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012495.24" ; havana_transcript "OTTHUMT00000034892.6" ; hgnc_id "HGNC:9986" ; level 2 ; orig_coord_info "chr1,151346205,151346320,-" ; protein_id "ENSP00000290524.4" ; tag basic appris_principal_1 CCDS ; transcript_id "RFX5--RFX5-AS1^ENST00000290524.8" ; transcript_name "RFX5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RIC1--KDM4C HAVANA gene 1001 25077 . + . FI_gene_label "RIC1^ENSG00000107036.12" ; ID "RIC1--KDM4C^RIC1^ENSG00000107036.12" ; ccdsid "CCDS47949.2" ; exon_id "ENSE00001626901.2" ; exon_number 1 ; gene_id "RIC1--KDM4C^RIC1^ENSG00000107036.12" ; gene_name RIC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019505.5" ; havana_transcript "OTTHUMT00000051635.3" ; hgnc_id "HGNC:17686" ; level 2 ; orig_coord_info "chr9,5629310,5629453,+" ; protein_id "ENSP00000251879.6" ; tag basic CCDS ; transcript_id "RIC1--KDM4C^ENST00000251879.10" ; transcript_name "RIC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RIC1--KDM4C HAVANA mRNA 1001 25077 . + . FI_gene_label "RIC1^ENSG00000107036.12" ; ID "RIC1--KDM4C^ENST00000251879.10" ; Parent "RIC1--KDM4C^RIC1^ENSG00000107036.12" ; ccdsid "CCDS47949.2" ; exon_id "ENSE00001626901.2" ; exon_number 1 ; gene_id "RIC1--KDM4C^RIC1^ENSG00000107036.12" ; gene_name RIC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019505.5" ; havana_transcript "OTTHUMT00000051635.3" ; hgnc_id "HGNC:17686" ; level 2 ; orig_coord_info "chr9,5629310,5629453,+" ; protein_id "ENSP00000251879.6" ; tag basic CCDS ; transcript_id "RIC1--KDM4C^ENST00000251879.10" ; transcript_name "RIC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RIC1--KDM4C HAVANA gene 34826 71519 . + . FI_gene_label "KDM4C^ENSG00000107077.19" ; ID "RIC1--KDM4C^KDM4C^ENSG00000107077.19" ; exon_id "ENSE00003498584.1" ; exon_number 2 ; gene_id "RIC1--KDM4C^KDM4C^ENSG00000107077.19" ; gene_name KDM4C ; gene_type protein_coding ; havana_gene "OTTHUMG00000019536.6" ; havana_transcript "OTTHUMT00000051693.1" ; hgnc_id "HGNC:17071" ; level 2 ; orig_coord_info "chr9,6792989,6793132,+" ; protein_id "ENSP00000370707.3" ; tag basic appris_alternative_2 ; transcript_id "RIC1--KDM4C^ENST00000381306.7" ; transcript_name "KDM4C-201" ; transcript_support_level 2 ; transcript_type protein_coding
RIC1--KDM4C HAVANA mRNA 34826 71519 . + . FI_gene_label "KDM4C^ENSG00000107077.19" ; ID "RIC1--KDM4C^ENST00000381306.7" ; Parent "RIC1--KDM4C^KDM4C^ENSG00000107077.19" ; exon_id "ENSE00003498584.1" ; exon_number 2 ; gene_id "RIC1--KDM4C^KDM4C^ENSG00000107077.19" ; gene_name KDM4C ; gene_type protein_coding ; havana_gene "OTTHUMG00000019536.6" ; havana_transcript "OTTHUMT00000051693.1" ; hgnc_id "HGNC:17071" ; level 2 ; orig_coord_info "chr9,6792989,6793132,+" ; protein_id "ENSP00000370707.3" ; tag basic appris_alternative_2 ; transcript_id "RIC1--KDM4C^ENST00000381306.7" ; transcript_name "KDM4C-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RPRD2--AL589986.2 HAVANA gene 2367 6556 . + . FI_gene_label "RPRD2^ENSG00000163125.15" ; ID "RPRD2--AL589986.2^RPRD2^ENSG00000163125.15" ; exon_id "ENSE00001917042.1" ; exon_number 1 ; gene_id "RPRD2--AL589986.2^RPRD2^ENSG00000163125.15" ; gene_name RPRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012808.2" ; havana_transcript "OTTHUMT00000035845.1" ; hgnc_id "HGNC:29039" ; level 2 ; orig_coord_info "chr1,150364715,150364919,+" ; protein_id "ENSP00000358063.3" ; tag basic ; transcript_id "RPRD2--AL589986.2^ENST00000369067.7" ; transcript_name "RPRD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
RPRD2--AL589986.2 HAVANA mRNA 2367 6556 . + . FI_gene_label "RPRD2^ENSG00000163125.15" ; ID "RPRD2--AL589986.2^ENST00000369067.7" ; Parent "RPRD2--AL589986.2^RPRD2^ENSG00000163125.15" ; exon_id "ENSE00001917042.1" ; exon_number 1 ; gene_id "RPRD2--AL589986.2^RPRD2^ENSG00000163125.15" ; gene_name RPRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012808.2" ; havana_transcript "OTTHUMT00000035845.1" ; hgnc_id "HGNC:29039" ; level 2 ; orig_coord_info "chr1,150364715,150364919,+" ; protein_id "ENSP00000358063.3" ; tag basic ; transcript_id "RPRD2--AL589986.2^ENST00000369067.7" ; transcript_name "RPRD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RPRD2--FLG-AS1 HAVANA gene 2367 6556 . + . FI_gene_label "RPRD2^ENSG00000163125.15" ; ID "RPRD2--FLG-AS1^RPRD2^ENSG00000163125.15" ; exon_id "ENSE00001917042.1" ; exon_number 1 ; gene_id "RPRD2--FLG-AS1^RPRD2^ENSG00000163125.15" ; gene_name RPRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012808.2" ; havana_transcript "OTTHUMT00000035845.1" ; hgnc_id "HGNC:29039" ; level 2 ; orig_coord_info "chr1,150364715,150364919,+" ; protein_id "ENSP00000358063.3" ; tag basic ; transcript_id "RPRD2--FLG-AS1^ENST00000369067.7" ; transcript_name "RPRD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
RPRD2--FLG-AS1 HAVANA mRNA 2367 6556 . + . FI_gene_label "RPRD2^ENSG00000163125.15" ; ID "RPRD2--FLG-AS1^ENST00000369067.7" ; Parent "RPRD2--FLG-AS1^RPRD2^ENSG00000163125.15" ; exon_id "ENSE00001917042.1" ; exon_number 1 ; gene_id "RPRD2--FLG-AS1^RPRD2^ENSG00000163125.15" ; gene_name RPRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012808.2" ; havana_transcript "OTTHUMT00000035845.1" ; hgnc_id "HGNC:29039" ; level 2 ; orig_coord_info "chr1,150364715,150364919,+" ; protein_id "ENSP00000358063.3" ; tag basic ; transcript_id "RPRD2--FLG-AS1^ENST00000369067.7" ; transcript_name "RPRD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RPRD2--HRNR HAVANA gene 23963 35455 . + . FI_gene_label "HRNR^ENSG00000197915.7" ; ID "RPRD2--HRNR^HRNR^ENSG00000197915.7" ; ccdsid "CCDS30859.1" ; exon_id "ENSE00001447987.1" ; exon_number 2 ; gene_id "RPRD2--HRNR^HRNR^ENSG00000197915.7" ; gene_name HRNR ; gene_type protein_coding ; havana_gene "OTTHUMG00000012243.2" ; havana_transcript "OTTHUMT00000034016.2" ; hgnc_id "HGNC:20846" ; level 2 ; orig_coord_info "chr1,152223116,152223253,-" ; protein_id "ENSP00000357791.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPRD2--HRNR^ENST00000368801.4" ; transcript_name "HRNR-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPRD2--HRNR HAVANA mRNA 23963 35455 . + . FI_gene_label "HRNR^ENSG00000197915.7" ; ID "RPRD2--HRNR^ENST00000368801.4" ; Parent "RPRD2--HRNR^HRNR^ENSG00000197915.7" ; ccdsid "CCDS30859.1" ; exon_id "ENSE00001447987.1" ; exon_number 2 ; gene_id "RPRD2--HRNR^HRNR^ENSG00000197915.7" ; gene_name HRNR ; gene_type protein_coding ; havana_gene "OTTHUMG00000012243.2" ; havana_transcript "OTTHUMT00000034016.2" ; hgnc_id "HGNC:20846" ; level 2 ; orig_coord_info "chr1,152223116,152223253,-" ; protein_id "ENSP00000357791.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPRD2--HRNR^ENST00000368801.4" ; transcript_name "HRNR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPRD2--HRNR HAVANA gene 2367 6556 . + . FI_gene_label "RPRD2^ENSG00000163125.15" ; ID "RPRD2--HRNR^RPRD2^ENSG00000163125.15" ; exon_id "ENSE00001917042.1" ; exon_number 1 ; gene_id "RPRD2--HRNR^RPRD2^ENSG00000163125.15" ; gene_name RPRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012808.2" ; havana_transcript "OTTHUMT00000035845.1" ; hgnc_id "HGNC:29039" ; level 2 ; orig_coord_info "chr1,150364715,150364919,+" ; protein_id "ENSP00000358063.3" ; tag basic ; transcript_id "RPRD2--HRNR^ENST00000369067.7" ; transcript_name "RPRD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
RPRD2--HRNR HAVANA mRNA 2367 6556 . + . FI_gene_label "RPRD2^ENSG00000163125.15" ; ID "RPRD2--HRNR^ENST00000369067.7" ; Parent "RPRD2--HRNR^RPRD2^ENSG00000163125.15" ; exon_id "ENSE00001917042.1" ; exon_number 1 ; gene_id "RPRD2--HRNR^RPRD2^ENSG00000163125.15" ; gene_name RPRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012808.2" ; havana_transcript "OTTHUMT00000035845.1" ; hgnc_id "HGNC:29039" ; level 2 ; orig_coord_info "chr1,150364715,150364919,+" ; protein_id "ENSP00000358063.3" ; tag basic ; transcript_id "RPRD2--HRNR^ENST00000369067.7" ; transcript_name "RPRD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RSBN1L--PHTF2 HAVANA gene 19599 44871 . + . FI_gene_label "PHTF2^ENSG00000006576.16" ; ID "RSBN1L--PHTF2^PHTF2^ENSG00000006576.16" ; exon_id "ENSE00001677012.1" ; exon_number 1 ; gene_id "RSBN1L--PHTF2^PHTF2^ENSG00000006576.16" ; gene_name PHTF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155557.3" ; havana_transcript "OTTHUMT00000340638.2" ; hgnc_id "HGNC:13411" ; level 2 ; orig_coord_info "chr7,77840256,77840300,+" ; protein_id "ENSP00000248550.7" ; tag basic ; transcript_id "RSBN1L--PHTF2^ENST00000248550.7" ; transcript_name "PHTF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RSBN1L--PHTF2 HAVANA mRNA 19599 44871 . + . FI_gene_label "PHTF2^ENSG00000006576.16" ; ID "RSBN1L--PHTF2^ENST00000248550.7" ; Parent "RSBN1L--PHTF2^PHTF2^ENSG00000006576.16" ; exon_id "ENSE00001677012.1" ; exon_number 1 ; gene_id "RSBN1L--PHTF2^PHTF2^ENSG00000006576.16" ; gene_name PHTF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155557.3" ; havana_transcript "OTTHUMT00000340638.2" ; hgnc_id "HGNC:13411" ; level 2 ; orig_coord_info "chr7,77840256,77840300,+" ; protein_id "ENSP00000248550.7" ; tag basic ; transcript_id "RSBN1L--PHTF2^ENST00000248550.7" ; transcript_name "PHTF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RSBN1L--PHTF2 HAVANA gene 1001 15368 . + . FI_gene_label "RSBN1L^ENSG00000187257.16" ; ID "RSBN1L--PHTF2^RSBN1L^ENSG00000187257.16" ; ccdsid "CCDS43607.1" ; exon_id "ENSE00001332942.5" ; exon_number 1 ; gene_id "RSBN1L--PHTF2^RSBN1L^ENSG00000187257.16" ; gene_name RSBN1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000155517.8" ; havana_transcript "OTTHUMT00000340455.4" ; hgnc_id "HGNC:24765" ; level 2 ; orig_coord_info "chr7,77696470,77697055,+" ; protein_id "ENSP00000334040.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1L--PHTF2^ENST00000334955.13" ; transcript_name "RSBN1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
RSBN1L--PHTF2 HAVANA mRNA 1001 15368 . + . FI_gene_label "RSBN1L^ENSG00000187257.16" ; ID "RSBN1L--PHTF2^ENST00000334955.13" ; Parent "RSBN1L--PHTF2^RSBN1L^ENSG00000187257.16" ; ccdsid "CCDS43607.1" ; exon_id "ENSE00001332942.5" ; exon_number 1 ; gene_id "RSBN1L--PHTF2^RSBN1L^ENSG00000187257.16" ; gene_name RSBN1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000155517.8" ; havana_transcript "OTTHUMT00000340455.4" ; hgnc_id "HGNC:24765" ; level 2 ; orig_coord_info "chr7,77696470,77697055,+" ; protein_id "ENSP00000334040.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1L--PHTF2^ENST00000334955.13" ; transcript_name "RSBN1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SCNN1B--PLK1 HAVANA gene 24426 33140 . + . FI_gene_label "PLK1^ENSG00000166851.15" ; ID "SCNN1B--PLK1^PLK1^ENSG00000166851.15" ; ccdsid "CCDS10616.1" ; exon_id "ENSE00001107240.7" ; exon_number 1 ; gene_id "SCNN1B--PLK1^PLK1^ENSG00000166851.15" ; gene_name PLK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000096984.6" ; havana_transcript "OTTHUMT00000214057.3" ; hgnc_id "HGNC:9077" ; level 2 ; orig_coord_info "chr16,23678933,23679340,+" ; protein_id "ENSP00000300093.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCNN1B--PLK1^ENST00000300093.9" ; transcript_name "PLK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SCNN1B--PLK1 HAVANA mRNA 24426 33140 . + . FI_gene_label "PLK1^ENSG00000166851.15" ; ID "SCNN1B--PLK1^ENST00000300093.9" ; Parent "SCNN1B--PLK1^PLK1^ENSG00000166851.15" ; ccdsid "CCDS10616.1" ; exon_id "ENSE00001107240.7" ; exon_number 1 ; gene_id "SCNN1B--PLK1^PLK1^ENSG00000166851.15" ; gene_name PLK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000096984.6" ; havana_transcript "OTTHUMT00000214057.3" ; hgnc_id "HGNC:9077" ; level 2 ; orig_coord_info "chr16,23678933,23679340,+" ; protein_id "ENSP00000300093.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCNN1B--PLK1^ENST00000300093.9" ; transcript_name "PLK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SCNN1B--PLK1 HAVANA gene 4315 19699 . + . FI_gene_label "SCNN1B^ENSG00000168447.11" ; ID "SCNN1B--PLK1^SCNN1B^ENSG00000168447.11" ; exon_id "ENSE00001371435.2" ; exon_number 1 ; gene_id "SCNN1B--PLK1^SCNN1B^ENSG00000168447.11" ; gene_name SCNN1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000131608.8" ; havana_transcript "OTTHUMT00000434810.3" ; hgnc_id "HGNC:10600" ; level 2 ; orig_coord_info "chr16,23304000,23304101,+" ; protein_id "ENSP00000302874.5" ; tag basic ; transcript_id "SCNN1B--PLK1^ENST00000307331.9" ; transcript_name "SCNN1B-201" ; transcript_support_level 5 ; transcript_type protein_coding
SCNN1B--PLK1 HAVANA mRNA 4315 19699 . + . FI_gene_label "SCNN1B^ENSG00000168447.11" ; ID "SCNN1B--PLK1^ENST00000307331.9" ; Parent "SCNN1B--PLK1^SCNN1B^ENSG00000168447.11" ; exon_id "ENSE00001371435.2" ; exon_number 1 ; gene_id "SCNN1B--PLK1^SCNN1B^ENSG00000168447.11" ; gene_name SCNN1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000131608.8" ; havana_transcript "OTTHUMT00000434810.3" ; hgnc_id "HGNC:10600" ; level 2 ; orig_coord_info "chr16,23304000,23304101,+" ; protein_id "ENSP00000302874.5" ; tag basic ; transcript_id "SCNN1B--PLK1^ENST00000307331.9" ; transcript_name "SCNN1B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SIPA1L3--TSPAN13 HAVANA gene 1001 36315 . + . FI_gene_label "SIPA1L3^ENSG00000105738.11" ; ID "SIPA1L3--TSPAN13^SIPA1L3^ENSG00000105738.11" ; ccdsid "CCDS33007.1" ; exon_id "ENSE00001262141.3" ; exon_number 3 ; gene_id "SIPA1L3--TSPAN13^SIPA1L3^ENSG00000105738.11" ; gene_name SIPA1L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000073727.5" ; havana_transcript "OTTHUMT00000156294.3" ; hgnc_id "HGNC:23801" ; level 2 ; orig_coord_info "chr19,38081566,38083099,+" ; protein_id "ENSP00000222345.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SIPA1L3--TSPAN13^ENST00000222345.11" ; transcript_name "SIPA1L3-201" ; transcript_support_level 1 ; transcript_type protein_coding
SIPA1L3--TSPAN13 HAVANA mRNA 1001 36315 . + . FI_gene_label "SIPA1L3^ENSG00000105738.11" ; ID "SIPA1L3--TSPAN13^ENST00000222345.11" ; Parent "SIPA1L3--TSPAN13^SIPA1L3^ENSG00000105738.11" ; ccdsid "CCDS33007.1" ; exon_id "ENSE00001262141.3" ; exon_number 3 ; gene_id "SIPA1L3--TSPAN13^SIPA1L3^ENSG00000105738.11" ; gene_name SIPA1L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000073727.5" ; havana_transcript "OTTHUMT00000156294.3" ; hgnc_id "HGNC:23801" ; level 2 ; orig_coord_info "chr19,38081566,38083099,+" ; protein_id "ENSP00000222345.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SIPA1L3--TSPAN13^ENST00000222345.11" ; transcript_name "SIPA1L3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SIPA1L3--TSPAN13 HAVANA gene 39316 45983 . + . FI_gene_label "TSPAN13^ENSG00000106537.8" ; ID "SIPA1L3--TSPAN13^TSPAN13^ENSG00000106537.8" ; ccdsid "CCDS5363.1" ; exon_id "ENSE00000976318.6" ; exon_number 1 ; gene_id "SIPA1L3--TSPAN13^TSPAN13^ENSG00000106537.8" ; gene_name TSPAN13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022968.6" ; havana_transcript "OTTHUMT00000250178.3" ; hgnc_id "HGNC:21643" ; level 2 ; orig_coord_info "chr7,16753968,16754030,+" ; protein_id "ENSP00000262067.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SIPA1L3--TSPAN13^ENST00000262067.5" ; transcript_name "TSPAN13-201" ; transcript_support_level 1 ; transcript_type protein_coding
SIPA1L3--TSPAN13 HAVANA mRNA 39316 45983 . + . FI_gene_label "TSPAN13^ENSG00000106537.8" ; ID "SIPA1L3--TSPAN13^ENST00000262067.5" ; Parent "SIPA1L3--TSPAN13^TSPAN13^ENSG00000106537.8" ; ccdsid "CCDS5363.1" ; exon_id "ENSE00000976318.6" ; exon_number 1 ; gene_id "SIPA1L3--TSPAN13^TSPAN13^ENSG00000106537.8" ; gene_name TSPAN13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022968.6" ; havana_transcript "OTTHUMT00000250178.3" ; hgnc_id "HGNC:21643" ; level 2 ; orig_coord_info "chr7,16753968,16754030,+" ; protein_id "ENSP00000262067.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SIPA1L3--TSPAN13^ENST00000262067.5" ; transcript_name "TSPAN13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLFN11--HNF1B HAVANA gene 1095 11178 . + . FI_gene_label "SLFN11^ENSG00000172716.16" ; ID "SLFN11--HNF1B^SLFN11^ENSG00000172716.16" ; ccdsid "CCDS11294.1" ; exon_id "ENSE00001186651.3" ; exon_number 2 ; gene_id "SLFN11--HNF1B^SLFN11^ENSG00000172716.16" ; gene_name SLFN11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132948.3" ; havana_transcript "OTTHUMT00000256481.1" ; hgnc_id "HGNC:26633" ; level 2 ; orig_coord_info "chr17,35362739,35363807,-" ; protein_id "ENSP00000312402.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SLFN11--HNF1B^ENST00000308377.8" ; transcript_name "SLFN11-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLFN11--HNF1B HAVANA mRNA 1095 11178 . + . FI_gene_label "SLFN11^ENSG00000172716.16" ; ID "SLFN11--HNF1B^ENST00000308377.8" ; Parent "SLFN11--HNF1B^SLFN11^ENSG00000172716.16" ; ccdsid "CCDS11294.1" ; exon_id "ENSE00001186651.3" ; exon_number 2 ; gene_id "SLFN11--HNF1B^SLFN11^ENSG00000172716.16" ; gene_name SLFN11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132948.3" ; havana_transcript "OTTHUMT00000256481.1" ; hgnc_id "HGNC:26633" ; level 2 ; orig_coord_info "chr17,35362739,35363807,-" ; protein_id "ENSP00000312402.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SLFN11--HNF1B^ENST00000308377.8" ; transcript_name "SLFN11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLFN11--HNF1B HAVANA gene 14266 27188 . + . FI_gene_label "HNF1B^ENSG00000275410.5" ; ID "SLFN11--HNF1B^HNF1B^ENSG00000275410.5" ; ccdsid "CCDS77007.1" ; exon_id "ENSE00003737717.1" ; exon_number 1 ; gene_id "SLFN11--HNF1B^HNF1B^ENSG00000275410.5" ; gene_name HNF1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000188478.2" ; havana_transcript "OTTHUMT00000477396.1" ; hgnc_id "HGNC:11630" ; level 2 ; orig_coord_info "chr17,37744541,37744884,-" ; protein_id "ENSP00000477524.1" ; tag basic CCDS ; transcript_id "SLFN11--HNF1B^ENST00000613727.4" ; transcript_name "HNF1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLFN11--HNF1B HAVANA mRNA 14266 27188 . + . FI_gene_label "HNF1B^ENSG00000275410.5" ; ID "SLFN11--HNF1B^ENST00000613727.4" ; Parent "SLFN11--HNF1B^HNF1B^ENSG00000275410.5" ; ccdsid "CCDS77007.1" ; exon_id "ENSE00003737717.1" ; exon_number 1 ; gene_id "SLFN11--HNF1B^HNF1B^ENSG00000275410.5" ; gene_name HNF1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000188478.2" ; havana_transcript "OTTHUMT00000477396.1" ; hgnc_id "HGNC:11630" ; level 2 ; orig_coord_info "chr17,37744541,37744884,-" ; protein_id "ENSP00000477524.1" ; tag basic CCDS ; transcript_id "SLFN11--HNF1B^ENST00000613727.4" ; transcript_name "HNF1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SPOPL--AC092620.1 HAVANA gene 1001 15156 . + . FI_gene_label "SPOPL^ENSG00000144228.9" ; ID "SPOPL--AC092620.1^SPOPL^ENSG00000144228.9" ; ccdsid "CCDS33298.1" ; exon_id "ENSE00001160724.2" ; exon_number 2 ; gene_id "SPOPL--AC092620.1^SPOPL^ENSG00000144228.9" ; gene_name SPOPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000153635.2" ; havana_transcript "OTTHUMT00000331897.2" ; hgnc_id "HGNC:27934" ; level 2 ; orig_coord_info "chr2,138550217,138550294,+" ; protein_id "ENSP00000280098.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPOPL--AC092620.1^ENST00000280098.9" ; transcript_name "SPOPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
SPOPL--AC092620.1 HAVANA mRNA 1001 15156 . + . FI_gene_label "SPOPL^ENSG00000144228.9" ; ID "SPOPL--AC092620.1^ENST00000280098.9" ; Parent "SPOPL--AC092620.1^SPOPL^ENSG00000144228.9" ; ccdsid "CCDS33298.1" ; exon_id "ENSE00001160724.2" ; exon_number 2 ; gene_id "SPOPL--AC092620.1^SPOPL^ENSG00000144228.9" ; gene_name SPOPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000153635.2" ; havana_transcript "OTTHUMT00000331897.2" ; hgnc_id "HGNC:27934" ; level 2 ; orig_coord_info "chr2,138550217,138550294,+" ; protein_id "ENSP00000280098.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPOPL--AC092620.1^ENST00000280098.9" ; transcript_name "SPOPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SPOPL--AC092620.2 HAVANA gene 1001 15156 . + . FI_gene_label "SPOPL^ENSG00000144228.9" ; ID "SPOPL--AC092620.2^SPOPL^ENSG00000144228.9" ; ccdsid "CCDS33298.1" ; exon_id "ENSE00001160724.2" ; exon_number 2 ; gene_id "SPOPL--AC092620.2^SPOPL^ENSG00000144228.9" ; gene_name SPOPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000153635.2" ; havana_transcript "OTTHUMT00000331897.2" ; hgnc_id "HGNC:27934" ; level 2 ; orig_coord_info "chr2,138550217,138550294,+" ; protein_id "ENSP00000280098.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPOPL--AC092620.2^ENST00000280098.9" ; transcript_name "SPOPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
SPOPL--AC092620.2 HAVANA mRNA 1001 15156 . + . FI_gene_label "SPOPL^ENSG00000144228.9" ; ID "SPOPL--AC092620.2^ENST00000280098.9" ; Parent "SPOPL--AC092620.2^SPOPL^ENSG00000144228.9" ; ccdsid "CCDS33298.1" ; exon_id "ENSE00001160724.2" ; exon_number 2 ; gene_id "SPOPL--AC092620.2^SPOPL^ENSG00000144228.9" ; gene_name SPOPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000153635.2" ; havana_transcript "OTTHUMT00000331897.2" ; hgnc_id "HGNC:27934" ; level 2 ; orig_coord_info "chr2,138550217,138550294,+" ; protein_id "ENSP00000280098.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPOPL--AC092620.2^ENST00000280098.9" ; transcript_name "SPOPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STRN3--AL158058.2 HAVANA gene 1001 22287 . + . FI_gene_label "STRN3^ENSG00000196792.12" ; ID "STRN3--AL158058.2^STRN3^ENSG00000196792.12" ; ccdsid "CCDS9641.1" ; exon_id "ENSE00001366415.4" ; exon_number 1 ; gene_id "STRN3--AL158058.2^STRN3^ENSG00000196792.12" ; gene_name STRN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140201.5" ; havana_transcript "OTTHUMT00000276609.2" ; hgnc_id "HGNC:15720" ; level 2 ; orig_coord_info "chr14,31025904,31026185,-" ; protein_id "ENSP00000347909.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "STRN3--AL158058.2^ENST00000355683.9" ; transcript_name "STRN3-201" ; transcript_support_level 1 ; transcript_type protein_coding
STRN3--AL158058.2 HAVANA mRNA 1001 22287 . + . FI_gene_label "STRN3^ENSG00000196792.12" ; ID "STRN3--AL158058.2^ENST00000355683.9" ; Parent "STRN3--AL158058.2^STRN3^ENSG00000196792.12" ; ccdsid "CCDS9641.1" ; exon_id "ENSE00001366415.4" ; exon_number 1 ; gene_id "STRN3--AL158058.2^STRN3^ENSG00000196792.12" ; gene_name STRN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140201.5" ; havana_transcript "OTTHUMT00000276609.2" ; hgnc_id "HGNC:15720" ; level 2 ; orig_coord_info "chr14,31025904,31026185,-" ; protein_id "ENSP00000347909.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "STRN3--AL158058.2^ENST00000355683.9" ; transcript_name "STRN3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SVEP1--MYLK HAVANA gene 61804 112489 . + . FI_gene_label "MYLK^ENSG00000065534.19" ; ID "SVEP1--MYLK^MYLK^ENSG00000065534.19" ; ccdsid "CCDS43141.1" ; exon_id "ENSE00003544345.1" ; exon_number 4 ; gene_id "SVEP1--MYLK^MYLK^ENSG00000065534.19" ; gene_name MYLK ; gene_type protein_coding ; havana_gene "OTTHUMG00000141304.13" ; havana_transcript "OTTHUMT00000280601.1" ; hgnc_id "HGNC:7590" ; level 2 ; orig_coord_info "chr3,123793677,123793841,-" ; protein_id "ENSP00000320622.5" ; tag basic CCDS ; transcript_id "SVEP1--MYLK^ENST00000346322.9" ; transcript_name "MYLK-201" ; transcript_support_level 5 ; transcript_type protein_coding
SVEP1--MYLK HAVANA mRNA 61804 112489 . + . FI_gene_label "MYLK^ENSG00000065534.19" ; ID "SVEP1--MYLK^ENST00000346322.9" ; Parent "SVEP1--MYLK^MYLK^ENSG00000065534.19" ; ccdsid "CCDS43141.1" ; exon_id "ENSE00003544345.1" ; exon_number 4 ; gene_id "SVEP1--MYLK^MYLK^ENSG00000065534.19" ; gene_name MYLK ; gene_type protein_coding ; havana_gene "OTTHUMG00000141304.13" ; havana_transcript "OTTHUMT00000280601.1" ; hgnc_id "HGNC:7590" ; level 2 ; orig_coord_info "chr3,123793677,123793841,-" ; protein_id "ENSP00000320622.5" ; tag basic CCDS ; transcript_id "SVEP1--MYLK^ENST00000346322.9" ; transcript_name "MYLK-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SVEP1--MYLK HAVANA gene 1001 17023 . + . FI_gene_label "SVEP1^ENSG00000165124.18" ; ID "SVEP1--MYLK^SVEP1^ENSG00000165124.18" ; exon_id "ENSE00001463572.1" ; exon_number 1 ; gene_id "SVEP1--MYLK^SVEP1^ENSG00000165124.18" ; gene_name SVEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020482.3" ; havana_transcript "OTTHUMT00000053620.2" ; hgnc_id "HGNC:15985" ; level 2 ; orig_coord_info "chr9,110579013,110579543,-" ; protein_id "ENSP00000363585.2" ; tag basic ; transcript_id "SVEP1--MYLK^ENST00000374461.1" ; transcript_name "SVEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SVEP1--MYLK HAVANA mRNA 1001 17023 . + . FI_gene_label "SVEP1^ENSG00000165124.18" ; ID "SVEP1--MYLK^ENST00000374461.1" ; Parent "SVEP1--MYLK^SVEP1^ENSG00000165124.18" ; exon_id "ENSE00001463572.1" ; exon_number 1 ; gene_id "SVEP1--MYLK^SVEP1^ENSG00000165124.18" ; gene_name SVEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020482.3" ; havana_transcript "OTTHUMT00000053620.2" ; hgnc_id "HGNC:15985" ; level 2 ; orig_coord_info "chr9,110579013,110579543,-" ; protein_id "ENSP00000363585.2" ; tag basic ; transcript_id "SVEP1--MYLK^ENST00000374461.1" ; transcript_name "SVEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAF5--NT5C2 HAVANA gene 19428 46252 . + . FI_gene_label "NT5C2^ENSG00000076685.19" ; ID "TAF5--NT5C2^NT5C2^ENSG00000076685.19" ; ccdsid "CCDS7544.1" ; exon_id "ENSE00003557470.1" ; exon_number 2 ; gene_id "TAF5--NT5C2^NT5C2^ENSG00000076685.19" ; gene_name NT5C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018981.6" ; hgnc_id "HGNC:8022" ; level 2 ; orig_coord_info "chr10,103174858,103174958,-" ; protein_id "ENSP00000339479.5" ; tag basic appris_principal_1 CCDS ; transcript_id "TAF5--NT5C2^ENST00000343289.9" ; transcript_name "NT5C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAF5--NT5C2 HAVANA mRNA 19428 46252 . + . FI_gene_label "NT5C2^ENSG00000076685.19" ; ID "TAF5--NT5C2^ENST00000343289.9" ; Parent "TAF5--NT5C2^NT5C2^ENSG00000076685.19" ; ccdsid "CCDS7544.1" ; exon_id "ENSE00003557470.1" ; exon_number 2 ; gene_id "TAF5--NT5C2^NT5C2^ENSG00000076685.19" ; gene_name NT5C2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018981.6" ; hgnc_id "HGNC:8022" ; level 2 ; orig_coord_info "chr10,103174858,103174958,-" ; protein_id "ENSP00000339479.5" ; tag basic appris_principal_1 CCDS ; transcript_id "TAF5--NT5C2^ENST00000343289.9" ; transcript_name "NT5C2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAF5--NT5C2 HAVANA gene 1001 11846 . + . FI_gene_label "TAF5^ENSG00000148835.11" ; ID "TAF5--NT5C2^TAF5^ENSG00000148835.11" ; ccdsid "CCDS7547.1" ; exon_id "ENSE00001092400.2" ; exon_number 1 ; gene_id "TAF5--NT5C2^TAF5^ENSG00000148835.11" ; gene_name TAF5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018985.2" ; havana_transcript "OTTHUMT00000050144.2" ; hgnc_id "HGNC:11539" ; level 2 ; orig_coord_info "chr10,103367990,103368548,+" ; protein_id "ENSP00000358854.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAF5--NT5C2^ENST00000369839.4" ; transcript_name "TAF5-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAF5--NT5C2 HAVANA mRNA 1001 11846 . + . FI_gene_label "TAF5^ENSG00000148835.11" ; ID "TAF5--NT5C2^ENST00000369839.4" ; Parent "TAF5--NT5C2^TAF5^ENSG00000148835.11" ; ccdsid "CCDS7547.1" ; exon_id "ENSE00001092400.2" ; exon_number 1 ; gene_id "TAF5--NT5C2^TAF5^ENSG00000148835.11" ; gene_name TAF5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018985.2" ; havana_transcript "OTTHUMT00000050144.2" ; hgnc_id "HGNC:11539" ; level 2 ; orig_coord_info "chr10,103367990,103368548,+" ; protein_id "ENSP00000358854.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAF5--NT5C2^ENST00000369839.4" ; transcript_name "TAF5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
THEM4--KCNT2 HAVANA gene 16785 54997 . + . FI_gene_label "KCNT2^ENSG00000162687.19" ; ID "THEM4--KCNT2^KCNT2^ENSG00000162687.19" ; ccdsid "CCDS1384.1" ; exon_id "ENSE00003710992.2" ; exon_number 1 ; gene_id "THEM4--KCNT2^KCNT2^ENSG00000162687.19" ; gene_name KCNT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035611.6" ; havana_transcript "OTTHUMT00000086418.2" ; hgnc_id "HGNC:18866" ; level 2 ; orig_coord_info "chr1,196608215,196608309,-" ; protein_id "ENSP00000294725.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--KCNT2^ENST00000294725.14" ; transcript_name "KCNT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
THEM4--KCNT2 HAVANA mRNA 16785 54997 . + . FI_gene_label "KCNT2^ENSG00000162687.19" ; ID "THEM4--KCNT2^ENST00000294725.14" ; Parent "THEM4--KCNT2^KCNT2^ENSG00000162687.19" ; ccdsid "CCDS1384.1" ; exon_id "ENSE00003710992.2" ; exon_number 1 ; gene_id "THEM4--KCNT2^KCNT2^ENSG00000162687.19" ; gene_name KCNT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035611.6" ; havana_transcript "OTTHUMT00000086418.2" ; hgnc_id "HGNC:18866" ; level 2 ; orig_coord_info "chr1,196608215,196608309,-" ; protein_id "ENSP00000294725.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--KCNT2^ENST00000294725.14" ; transcript_name "KCNT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
THEM4--KCNT2 HAVANA gene 1127 12999 . + . FI_gene_label "THEM4^ENSG00000159445.13" ; ID "THEM4--KCNT2^THEM4^ENSG00000159445.13" ; ccdsid "CCDS1006.1" ; exon_id "ENSE00001870114.2" ; exon_number 1 ; gene_id "THEM4--KCNT2^THEM4^ENSG00000159445.13" ; gene_name THEM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013049.3" ; havana_transcript "OTTHUMT00000036615.2" ; hgnc_id "HGNC:17947" ; level 2 ; orig_coord_info "chr1,151909360,151909458,-" ; protein_id "ENSP00000357804.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--KCNT2^ENST00000368814.8" ; transcript_name "THEM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
THEM4--KCNT2 HAVANA mRNA 1127 12999 . + . FI_gene_label "THEM4^ENSG00000159445.13" ; ID "THEM4--KCNT2^ENST00000368814.8" ; Parent "THEM4--KCNT2^THEM4^ENSG00000159445.13" ; ccdsid "CCDS1006.1" ; exon_id "ENSE00001870114.2" ; exon_number 1 ; gene_id "THEM4--KCNT2^THEM4^ENSG00000159445.13" ; gene_name THEM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013049.3" ; havana_transcript "OTTHUMT00000036615.2" ; hgnc_id "HGNC:17947" ; level 2 ; orig_coord_info "chr1,151909360,151909458,-" ; protein_id "ENSP00000357804.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--KCNT2^ENST00000368814.8" ; transcript_name "THEM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TOR1AIP1--CEP350 HAVANA gene 1256 15996 . + . FI_gene_label "TOR1AIP1^ENSG00000143337.19" ; ID "TOR1AIP1--CEP350^TOR1AIP1^ENSG00000143337.19" ; exon_id "ENSE00002179326.1" ; exon_number 1 ; gene_id "TOR1AIP1--CEP350^TOR1AIP1^ENSG00000143337.19" ; gene_name TOR1AIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035257.10" ; havana_transcript "OTTHUMT00000393092.1" ; hgnc_id "HGNC:29456" ; level 2 ; orig_coord_info "chr1,179882503,179882977,+" ; protein_id "ENSP00000271583.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "TOR1AIP1--CEP350^ENST00000271583.7" ; transcript_name "TOR1AIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
TOR1AIP1--CEP350 HAVANA mRNA 1256 15996 . + . FI_gene_label "TOR1AIP1^ENSG00000143337.19" ; ID "TOR1AIP1--CEP350^ENST00000271583.7" ; Parent "TOR1AIP1--CEP350^TOR1AIP1^ENSG00000143337.19" ; exon_id "ENSE00002179326.1" ; exon_number 1 ; gene_id "TOR1AIP1--CEP350^TOR1AIP1^ENSG00000143337.19" ; gene_name TOR1AIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035257.10" ; havana_transcript "OTTHUMT00000393092.1" ; hgnc_id "HGNC:29456" ; level 2 ; orig_coord_info "chr1,179882503,179882977,+" ; protein_id "ENSP00000271583.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "TOR1AIP1--CEP350^ENST00000271583.7" ; transcript_name "TOR1AIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TOR1AIP1--CEP350 HAVANA gene 21180 24559 . + . FI_gene_label "CEP350^ENSG00000135837.16" ; ID "TOR1AIP1--CEP350^CEP350^ENSG00000135837.16" ; exon_id "ENSE00001445150.2" ; exon_number 1 ; gene_id "TOR1AIP1--CEP350^CEP350^ENSG00000135837.16" ; gene_name CEP350 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035269.5" ; havana_transcript "OTTHUMT00000309000.1" ; hgnc_id "HGNC:24238" ; level 2 ; orig_coord_info "chr1,179986182,179986254,+" ; protein_id "ENSP00000350016.2" ; tag mRNA_end_NF cds_end_NF ; transcript_id "TOR1AIP1--CEP350^ENST00000357434.2" ; transcript_name "CEP350-201" ; transcript_support_level 1 ; transcript_type protein_coding
TOR1AIP1--CEP350 HAVANA mRNA 21180 24559 . + . FI_gene_label "CEP350^ENSG00000135837.16" ; ID "TOR1AIP1--CEP350^ENST00000357434.2" ; Parent "TOR1AIP1--CEP350^CEP350^ENSG00000135837.16" ; exon_id "ENSE00001445150.2" ; exon_number 1 ; gene_id "TOR1AIP1--CEP350^CEP350^ENSG00000135837.16" ; gene_name CEP350 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035269.5" ; havana_transcript "OTTHUMT00000309000.1" ; hgnc_id "HGNC:24238" ; level 2 ; orig_coord_info "chr1,179986182,179986254,+" ; protein_id "ENSP00000350016.2" ; tag mRNA_end_NF cds_end_NF ; transcript_id "TOR1AIP1--CEP350^ENST00000357434.2" ; transcript_name "CEP350-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIM33--AL356277.3 HAVANA gene 1001 27622 . + . FI_gene_label "TRIM33^ENSG00000197323.12" ; ID "TRIM33--AL356277.3^TRIM33^ENSG00000197323.12" ; ccdsid "CCDS872.1" ; exon_id "ENSE00003846759.1" ; exon_number 1 ; gene_id "TRIM33--AL356277.3^TRIM33^ENSG00000197323.12" ; gene_name TRIM33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011891.3" ; havana_transcript "OTTHUMT00000032854.2" ; hgnc_id "HGNC:16290" ; level 2 ; orig_coord_info "chr1,114510551,114511076,-" ; protein_id "ENSP00000351250.2" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "TRIM33--AL356277.3^ENST00000358465.7" ; transcript_name "TRIM33-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIM33--AL356277.3 HAVANA mRNA 1001 27622 . + . FI_gene_label "TRIM33^ENSG00000197323.12" ; ID "TRIM33--AL356277.3^ENST00000358465.7" ; Parent "TRIM33--AL356277.3^TRIM33^ENSG00000197323.12" ; ccdsid "CCDS872.1" ; exon_id "ENSE00003846759.1" ; exon_number 1 ; gene_id "TRIM33--AL356277.3^TRIM33^ENSG00000197323.12" ; gene_name TRIM33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011891.3" ; havana_transcript "OTTHUMT00000032854.2" ; hgnc_id "HGNC:16290" ; level 2 ; orig_coord_info "chr1,114510551,114511076,-" ; protein_id "ENSP00000351250.2" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "TRIM33--AL356277.3^ENST00000358465.7" ; transcript_name "TRIM33-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIM33--AL356473.1 HAVANA gene 1001 27622 . + . FI_gene_label "TRIM33^ENSG00000197323.12" ; ID "TRIM33--AL356473.1^TRIM33^ENSG00000197323.12" ; ccdsid "CCDS872.1" ; exon_id "ENSE00003846759.1" ; exon_number 1 ; gene_id "TRIM33--AL356473.1^TRIM33^ENSG00000197323.12" ; gene_name TRIM33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011891.3" ; havana_transcript "OTTHUMT00000032854.2" ; hgnc_id "HGNC:16290" ; level 2 ; orig_coord_info "chr1,114510551,114511076,-" ; protein_id "ENSP00000351250.2" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "TRIM33--AL356473.1^ENST00000358465.7" ; transcript_name "TRIM33-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIM33--AL356473.1 HAVANA mRNA 1001 27622 . + . FI_gene_label "TRIM33^ENSG00000197323.12" ; ID "TRIM33--AL356473.1^ENST00000358465.7" ; Parent "TRIM33--AL356473.1^TRIM33^ENSG00000197323.12" ; ccdsid "CCDS872.1" ; exon_id "ENSE00003846759.1" ; exon_number 1 ; gene_id "TRIM33--AL356473.1^TRIM33^ENSG00000197323.12" ; gene_name TRIM33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011891.3" ; havana_transcript "OTTHUMT00000032854.2" ; hgnc_id "HGNC:16290" ; level 2 ; orig_coord_info "chr1,114510551,114511076,-" ; protein_id "ENSP00000351250.2" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "TRIM33--AL356473.1^ENST00000358465.7" ; transcript_name "TRIM33-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIM8--WBP1L HAVANA gene 1017 9212 . + . FI_gene_label "TRIM8^ENSG00000171206.15" ; ID "TRIM8--WBP1L^TRIM8^ENSG00000171206.15" ; exon_id "ENSE00001451210.2" ; exon_number 1 ; gene_id "TRIM8--WBP1L^TRIM8^ENSG00000171206.15" ; gene_name TRIM8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018964.8" ; havana_transcript "OTTHUMT00000496367.1" ; hgnc_id "HGNC:15579" ; level 2 ; orig_coord_info "chr10,102644618,102645187,+" ; protein_id "ENSP00000302120.6" ; tag RNA_Seq_supported_only basic ; transcript_id "TRIM8--WBP1L^ENST00000302424.12" ; transcript_name "TRIM8-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIM8--WBP1L HAVANA mRNA 1017 9212 . + . FI_gene_label "TRIM8^ENSG00000171206.15" ; ID "TRIM8--WBP1L^ENST00000302424.12" ; Parent "TRIM8--WBP1L^TRIM8^ENSG00000171206.15" ; exon_id "ENSE00001451210.2" ; exon_number 1 ; gene_id "TRIM8--WBP1L^TRIM8^ENSG00000171206.15" ; gene_name TRIM8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018964.8" ; havana_transcript "OTTHUMT00000496367.1" ; hgnc_id "HGNC:15579" ; level 2 ; orig_coord_info "chr10,102644618,102645187,+" ; protein_id "ENSP00000302120.6" ; tag RNA_Seq_supported_only basic ; transcript_id "TRIM8--WBP1L^ENST00000302424.12" ; transcript_name "TRIM8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIM8--WBP1L HAVANA gene 13465 20571 . + . FI_gene_label "WBP1L^ENSG00000166272.18" ; ID "TRIM8--WBP1L^WBP1L^ENSG00000166272.18" ; ccdsid "CCDS7540.1" ; exon_id "ENSE00001451186.4" ; exon_number 1 ; gene_id "TRIM8--WBP1L^WBP1L^ENSG00000166272.18" ; gene_name WBP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000018968.5" ; havana_transcript "OTTHUMT00000050100.2" ; hgnc_id "HGNC:23510" ; level 2 ; orig_coord_info "chr10,102776391,102776417,+" ; protein_id "ENSP00000358905.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "TRIM8--WBP1L^ENST00000369889.5" ; transcript_name "WBP1L-202" ; transcript_support_level 1 ; transcript_type protein_coding
TRIM8--WBP1L HAVANA mRNA 13465 20571 . + . FI_gene_label "WBP1L^ENSG00000166272.18" ; ID "TRIM8--WBP1L^ENST00000369889.5" ; Parent "TRIM8--WBP1L^WBP1L^ENSG00000166272.18" ; ccdsid "CCDS7540.1" ; exon_id "ENSE00001451186.4" ; exon_number 1 ; gene_id "TRIM8--WBP1L^WBP1L^ENSG00000166272.18" ; gene_name WBP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000018968.5" ; havana_transcript "OTTHUMT00000050100.2" ; hgnc_id "HGNC:23510" ; level 2 ; orig_coord_info "chr10,102776391,102776417,+" ; protein_id "ENSP00000358905.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "TRIM8--WBP1L^ENST00000369889.5" ; transcript_name "WBP1L-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TULP2--LIPC HAVANA gene 1001 11824 . + . FI_gene_label "TULP2^ENSG00000104804.8" ; ID "TULP2--LIPC^TULP2^ENSG00000104804.8" ; ccdsid "CCDS12739.1" ; exon_id "ENSE00000853371.3" ; exon_number 2 ; gene_id "TULP2--LIPC^TULP2^ENSG00000104804.8" ; gene_name TULP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164406.3" ; havana_transcript "OTTHUMT00000378633.2" ; hgnc_id "HGNC:12424" ; level 2 ; orig_coord_info "chr19,48897837,48897868,-" ; protein_id "ENSP00000221399.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TULP2--LIPC^ENST00000221399.8" ; transcript_name "TULP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TULP2--LIPC HAVANA mRNA 1001 11824 . + . FI_gene_label "TULP2^ENSG00000104804.8" ; ID "TULP2--LIPC^ENST00000221399.8" ; Parent "TULP2--LIPC^TULP2^ENSG00000104804.8" ; ccdsid "CCDS12739.1" ; exon_id "ENSE00000853371.3" ; exon_number 2 ; gene_id "TULP2--LIPC^TULP2^ENSG00000104804.8" ; gene_name TULP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164406.3" ; havana_transcript "OTTHUMT00000378633.2" ; hgnc_id "HGNC:12424" ; level 2 ; orig_coord_info "chr19,48897837,48897868,-" ; protein_id "ENSP00000221399.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TULP2--LIPC^ENST00000221399.8" ; transcript_name "TULP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TULP2--LIPC HAVANA gene 17239 30221 . + . FI_gene_label "LIPC^ENSG00000166035.11" ; ID "TULP2--LIPC^LIPC^ENSG00000166035.11" ; ccdsid "CCDS10166.1" ; exon_id "ENSE00003583777.1" ; exon_number 1 ; gene_id "TULP2--LIPC^LIPC^ENSG00000166035.11" ; gene_name LIPC ; gene_type protein_coding ; havana_gene "OTTHUMG00000132632.4" ; havana_transcript "OTTHUMT00000255879.4" ; hgnc_id "HGNC:6619" ; level 2 ; orig_coord_info "chr15,58432033,58432120,+" ; protein_id "ENSP00000299022.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TULP2--LIPC^ENST00000299022.10" ; transcript_name "LIPC-201" ; transcript_support_level 1 ; transcript_type protein_coding
TULP2--LIPC HAVANA mRNA 17239 30221 . + . FI_gene_label "LIPC^ENSG00000166035.11" ; ID "TULP2--LIPC^ENST00000299022.10" ; Parent "TULP2--LIPC^LIPC^ENSG00000166035.11" ; ccdsid "CCDS10166.1" ; exon_id "ENSE00003583777.1" ; exon_number 1 ; gene_id "TULP2--LIPC^LIPC^ENSG00000166035.11" ; gene_name LIPC ; gene_type protein_coding ; havana_gene "OTTHUMG00000132632.4" ; havana_transcript "OTTHUMT00000255879.4" ; hgnc_id "HGNC:6619" ; level 2 ; orig_coord_info "chr15,58432033,58432120,+" ; protein_id "ENSP00000299022.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TULP2--LIPC^ENST00000299022.10" ; transcript_name "LIPC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UBE2G1--ANKFY1 HAVANA gene 16556 51723 . + . FI_gene_label "ANKFY1^ENSG00000185722.18" ; ID "UBE2G1--ANKFY1^ANKFY1^ENSG00000185722.18" ; ccdsid "CCDS82038.1" ; exon_id "ENSE00002669364.2" ; exon_number 1 ; gene_id "UBE2G1--ANKFY1^ANKFY1^ENSG00000185722.18" ; gene_name ANKFY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177727.8" ; havana_transcript "OTTHUMT00000438702.2" ; hgnc_id "HGNC:20763" ; level 2 ; orig_coord_info "chr17,4263932,4263941,-" ; protein_id "ENSP00000343362.4" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "UBE2G1--ANKFY1^ENST00000341657.9" ; transcript_name "ANKFY1-201" ; transcript_support_level 5 ; transcript_type protein_coding
UBE2G1--ANKFY1 HAVANA mRNA 16556 51723 . + . FI_gene_label "ANKFY1^ENSG00000185722.18" ; ID "UBE2G1--ANKFY1^ENST00000341657.9" ; Parent "UBE2G1--ANKFY1^ANKFY1^ENSG00000185722.18" ; ccdsid "CCDS82038.1" ; exon_id "ENSE00002669364.2" ; exon_number 1 ; gene_id "UBE2G1--ANKFY1^ANKFY1^ENSG00000185722.18" ; gene_name ANKFY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177727.8" ; havana_transcript "OTTHUMT00000438702.2" ; hgnc_id "HGNC:20763" ; level 2 ; orig_coord_info "chr17,4263932,4263941,-" ; protein_id "ENSP00000343362.4" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "UBE2G1--ANKFY1^ENST00000341657.9" ; transcript_name "ANKFY1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
UBE2G1--ANKFY1 HAVANA gene 1147 13539 . + . FI_gene_label "UBE2G1^ENSG00000132388.12" ; ID "UBE2G1--ANKFY1^UBE2G1^ENSG00000132388.12" ; ccdsid "CCDS32532.1" ; exon_id "ENSE00002657238.1" ; exon_number 1 ; gene_id "UBE2G1--ANKFY1^UBE2G1^ENSG00000132388.12" ; gene_name UBE2G1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177826.3" ; havana_transcript "OTTHUMT00000439099.1" ; hgnc_id "HGNC:12482" ; level 2 ; orig_coord_info "chr17,4366271,4366316,-" ; protein_id "ENSP00000380178.2" ; tag basic appris_principal_1 CCDS ; transcript_id "UBE2G1--ANKFY1^ENST00000396981.6" ; transcript_name "UBE2G1-201" ; transcript_support_level 1 ; transcript_type protein_coding
UBE2G1--ANKFY1 HAVANA mRNA 1147 13539 . + . FI_gene_label "UBE2G1^ENSG00000132388.12" ; ID "UBE2G1--ANKFY1^ENST00000396981.6" ; Parent "UBE2G1--ANKFY1^UBE2G1^ENSG00000132388.12" ; ccdsid "CCDS32532.1" ; exon_id "ENSE00002657238.1" ; exon_number 1 ; gene_id "UBE2G1--ANKFY1^UBE2G1^ENSG00000132388.12" ; gene_name UBE2G1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177826.3" ; havana_transcript "OTTHUMT00000439099.1" ; hgnc_id "HGNC:12482" ; level 2 ; orig_coord_info "chr17,4366271,4366316,-" ; protein_id "ENSP00000380178.2" ; tag basic appris_principal_1 CCDS ; transcript_id "UBE2G1--ANKFY1^ENST00000396981.6" ; transcript_name "UBE2G1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP54--TMEM254 HAVANA gene 1345 36342 . + . FI_gene_label "USP54^ENSG00000166348.19" ; ID "USP54--TMEM254^USP54^ENSG00000166348.19" ; ccdsid "CCDS7329.2" ; exon_id "ENSE00003652075.1" ; exon_number 2 ; gene_id "USP54--TMEM254^USP54^ENSG00000166348.19" ; gene_name USP54 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018469.8" ; havana_transcript "OTTHUMT00000316563.2" ; hgnc_id "HGNC:23513" ; level 2 ; orig_coord_info "chr10,73575512,73575658,-" ; protein_id "ENSP00000345216.4" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "USP54--TMEM254^ENST00000339859.8" ; transcript_name "USP54-201" ; transcript_support_level 5 ; transcript_type protein_coding
USP54--TMEM254 HAVANA mRNA 1345 36342 . + . FI_gene_label "USP54^ENSG00000166348.19" ; ID "USP54--TMEM254^ENST00000339859.8" ; Parent "USP54--TMEM254^USP54^ENSG00000166348.19" ; ccdsid "CCDS7329.2" ; exon_id "ENSE00003652075.1" ; exon_number 2 ; gene_id "USP54--TMEM254^USP54^ENSG00000166348.19" ; gene_name USP54 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018469.8" ; havana_transcript "OTTHUMT00000316563.2" ; hgnc_id "HGNC:23513" ; level 2 ; orig_coord_info "chr10,73575512,73575658,-" ; protein_id "ENSP00000345216.4" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "USP54--TMEM254^ENST00000339859.8" ; transcript_name "USP54-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
USP54--TMEM254 HAVANA gene 39733 46356 . + . FI_gene_label "TMEM254^ENSG00000133678.14" ; ID "USP54--TMEM254^TMEM254^ENSG00000133678.14" ; exon_id "ENSE00001457395.3" ; exon_number 1 ; gene_id "USP54--TMEM254^TMEM254^ENSG00000133678.14" ; gene_name TMEM254 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018602.2" ; havana_transcript "OTTHUMT00000049031.1" ; hgnc_id "HGNC:25804" ; level 2 ; orig_coord_info "chr10,80079036,80079184,+" ; protein_id "ENSP00000361347.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "USP54--TMEM254^ENST00000372273.7" ; transcript_name "TMEM254-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP54--TMEM254 HAVANA mRNA 39733 46356 . + . FI_gene_label "TMEM254^ENSG00000133678.14" ; ID "USP54--TMEM254^ENST00000372273.7" ; Parent "USP54--TMEM254^TMEM254^ENSG00000133678.14" ; exon_id "ENSE00001457395.3" ; exon_number 1 ; gene_id "USP54--TMEM254^TMEM254^ENSG00000133678.14" ; gene_name TMEM254 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018602.2" ; havana_transcript "OTTHUMT00000049031.1" ; hgnc_id "HGNC:25804" ; level 2 ; orig_coord_info "chr10,80079036,80079184,+" ; protein_id "ENSP00000361347.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "USP54--TMEM254^ENST00000372273.7" ; transcript_name "TMEM254-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VEGFB--PLXNB2 HAVANA gene 1001 5681 . + . FI_gene_label "VEGFB^ENSG00000173511.10" ; ID "VEGFB--PLXNB2^VEGFB^ENSG00000173511.10" ; ccdsid "CCDS8062.1" ; exon_id "ENSE00002297940.2" ; exon_number 1 ; gene_id "VEGFB--PLXNB2^VEGFB^ENSG00000173511.10" ; gene_name VEGFB ; gene_type protein_coding ; havana_gene "OTTHUMG00000167813.3" ; havana_transcript "OTTHUMT00000396393.3" ; hgnc_id "HGNC:12681" ; level 2 ; orig_coord_info "chr11,64234834,64234893,+" ; protein_id "ENSP00000311127.2" ; tag basic MANE_Select CCDS ; transcript_id "VEGFB--PLXNB2^ENST00000309422.7" ; transcript_name "VEGFB-201" ; transcript_support_level 1 ; transcript_type protein_coding
VEGFB--PLXNB2 HAVANA mRNA 1001 5681 . + . FI_gene_label "VEGFB^ENSG00000173511.10" ; ID "VEGFB--PLXNB2^ENST00000309422.7" ; Parent "VEGFB--PLXNB2^VEGFB^ENSG00000173511.10" ; ccdsid "CCDS8062.1" ; exon_id "ENSE00002297940.2" ; exon_number 1 ; gene_id "VEGFB--PLXNB2^VEGFB^ENSG00000173511.10" ; gene_name VEGFB ; gene_type protein_coding ; havana_gene "OTTHUMG00000167813.3" ; havana_transcript "OTTHUMT00000396393.3" ; hgnc_id "HGNC:12681" ; level 2 ; orig_coord_info "chr11,64234834,64234893,+" ; protein_id "ENSP00000311127.2" ; tag basic MANE_Select CCDS ; transcript_id "VEGFB--PLXNB2^ENST00000309422.7" ; transcript_name "VEGFB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VEGFB--PLXNB2 HAVANA gene 8682 27570 . + . FI_gene_label "PLXNB2^ENSG00000196576.16" ; ID "VEGFB--PLXNB2^PLXNB2^ENSG00000196576.16" ; ccdsid "CCDS43035.1" ; exon_id "ENSE00003893219.1" ; exon_number 3 ; gene_id "VEGFB--PLXNB2^PLXNB2^ENSG00000196576.16" ; gene_name PLXNB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150219.10" ; havana_transcript "OTTHUMT00000504274.2" ; hgnc_id "HGNC:9104" ; level 2 ; orig_coord_info "chr22,50289517,50290584,-" ; protein_id "ENSP00000352288.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "VEGFB--PLXNB2^ENST00000359337.9" ; transcript_name "PLXNB2-201" ; transcript_support_level 5 ; transcript_type protein_coding
VEGFB--PLXNB2 HAVANA mRNA 8682 27570 . + . FI_gene_label "PLXNB2^ENSG00000196576.16" ; ID "VEGFB--PLXNB2^ENST00000359337.9" ; Parent "VEGFB--PLXNB2^PLXNB2^ENSG00000196576.16" ; ccdsid "CCDS43035.1" ; exon_id "ENSE00003893219.1" ; exon_number 3 ; gene_id "VEGFB--PLXNB2^PLXNB2^ENSG00000196576.16" ; gene_name PLXNB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150219.10" ; havana_transcript "OTTHUMT00000504274.2" ; hgnc_id "HGNC:9104" ; level 2 ; orig_coord_info "chr22,50289517,50290584,-" ; protein_id "ENSP00000352288.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "VEGFB--PLXNB2^ENST00000359337.9" ; transcript_name "PLXNB2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
VSIG10--SRRM4 HAVANA gene 25466 56500 . + . FI_gene_label "SRRM4^ENSG00000139767.10" ; ID "VSIG10--SRRM4^SRRM4^ENSG00000139767.10" ; ccdsid "CCDS44994.1" ; exon_id "ENSE00001111306.4" ; exon_number 1 ; gene_id "VSIG10--SRRM4^SRRM4^ENSG00000139767.10" ; gene_name SRRM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168928.4" ; havana_transcript "OTTHUMT00000401640.3" ; hgnc_id "HGNC:29389" ; level 2 ; orig_coord_info "chr12,118981883,118982013,+" ; protein_id "ENSP00000267260.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VSIG10--SRRM4^ENST00000267260.5" ; transcript_name "SRRM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
VSIG10--SRRM4 HAVANA mRNA 25466 56500 . + . FI_gene_label "SRRM4^ENSG00000139767.10" ; ID "VSIG10--SRRM4^ENST00000267260.5" ; Parent "VSIG10--SRRM4^SRRM4^ENSG00000139767.10" ; ccdsid "CCDS44994.1" ; exon_id "ENSE00001111306.4" ; exon_number 1 ; gene_id "VSIG10--SRRM4^SRRM4^ENSG00000139767.10" ; gene_name SRRM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168928.4" ; havana_transcript "OTTHUMT00000401640.3" ; hgnc_id "HGNC:29389" ; level 2 ; orig_coord_info "chr12,118981883,118982013,+" ; protein_id "ENSP00000267260.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VSIG10--SRRM4^ENST00000267260.5" ; transcript_name "SRRM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VSIG10--SRRM4 HAVANA gene 8079 22465 . + . FI_gene_label "VSIG10^ENSG00000176834.14" ; ID "VSIG10--SRRM4^VSIG10^ENSG00000176834.14" ; ccdsid "CCDS44992.1" ; exon_id "ENSE00002245844.2" ; exon_number 1 ; gene_id "VSIG10--SRRM4^VSIG10^ENSG00000176834.14" ; gene_name VSIG10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168835.9" ; havana_transcript "OTTHUMT00000401273.3" ; hgnc_id "HGNC:26078" ; level 2 ; orig_coord_info "chr12,118103593,118103671,-" ; protein_id "ENSP00000352172.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VSIG10--SRRM4^ENST00000359236.10" ; transcript_name "VSIG10-202" ; transcript_support_level 1 ; transcript_type protein_coding
VSIG10--SRRM4 HAVANA mRNA 8079 22465 . + . FI_gene_label "VSIG10^ENSG00000176834.14" ; ID "VSIG10--SRRM4^ENST00000359236.10" ; Parent "VSIG10--SRRM4^VSIG10^ENSG00000176834.14" ; ccdsid "CCDS44992.1" ; exon_id "ENSE00002245844.2" ; exon_number 1 ; gene_id "VSIG10--SRRM4^VSIG10^ENSG00000176834.14" ; gene_name VSIG10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168835.9" ; havana_transcript "OTTHUMT00000401273.3" ; hgnc_id "HGNC:26078" ; level 2 ; orig_coord_info "chr12,118103593,118103671,-" ; protein_id "ENSP00000352172.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VSIG10--SRRM4^ENST00000359236.10" ; transcript_name "VSIG10-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VTI1A--TCF7L2 HAVANA gene 37904 46094 . + . FI_gene_label "TCF7L2^ENSG00000148737.17" ; ID "VTI1A--TCF7L2^TCF7L2^ENSG00000148737.17" ; exon_id "ENSE00001738678.1" ; exon_number 1 ; gene_id "VTI1A--TCF7L2^TCF7L2^ENSG00000148737.17" ; gene_name TCF7L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019070.11" ; havana_transcript "OTTHUMT00000050420.2" ; hgnc_id "HGNC:11641" ; level 2 ; orig_coord_info "chr10,113146072,113146097,+" ; protein_id "ENSP00000277945.7" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "VTI1A--TCF7L2^ENST00000277945.11" ; transcript_name "TCF7L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
VTI1A--TCF7L2 HAVANA mRNA 37904 46094 . + . FI_gene_label "TCF7L2^ENSG00000148737.17" ; ID "VTI1A--TCF7L2^ENST00000277945.11" ; Parent "VTI1A--TCF7L2^TCF7L2^ENSG00000148737.17" ; exon_id "ENSE00001738678.1" ; exon_number 1 ; gene_id "VTI1A--TCF7L2^TCF7L2^ENSG00000148737.17" ; gene_name TCF7L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019070.11" ; havana_transcript "OTTHUMT00000050420.2" ; hgnc_id "HGNC:11641" ; level 2 ; orig_coord_info "chr10,113146072,113146097,+" ; protein_id "ENSP00000277945.7" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "VTI1A--TCF7L2^ENST00000277945.11" ; transcript_name "TCF7L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
VTI1A--TCF7L2 HAVANA gene 1218 20362 . + . FI_gene_label "VTI1A^ENSG00000151532.14" ; ID "VTI1A--TCF7L2^VTI1A^ENSG00000151532.14" ; ccdsid "CCDS7575.2" ; exon_id "ENSE00003899883.1" ; exon_number 1 ; gene_id "VTI1A--TCF7L2^VTI1A^ENSG00000151532.14" ; gene_name VTI1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000019063.2" ; havana_transcript "OTTHUMT00000050397.2" ; hgnc_id "HGNC:17792" ; level 2 ; orig_coord_info "chr10,112447374,112447467,+" ; protein_id "ENSP00000376792.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VTI1A--TCF7L2^ENST00000393077.3" ; transcript_name "VTI1A-201" ; transcript_support_level 2 ; transcript_type protein_coding
VTI1A--TCF7L2 HAVANA mRNA 1218 20362 . + . FI_gene_label "VTI1A^ENSG00000151532.14" ; ID "VTI1A--TCF7L2^ENST00000393077.3" ; Parent "VTI1A--TCF7L2^VTI1A^ENSG00000151532.14" ; ccdsid "CCDS7575.2" ; exon_id "ENSE00003899883.1" ; exon_number 1 ; gene_id "VTI1A--TCF7L2^VTI1A^ENSG00000151532.14" ; gene_name VTI1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000019063.2" ; havana_transcript "OTTHUMT00000050397.2" ; hgnc_id "HGNC:17792" ; level 2 ; orig_coord_info "chr10,112447374,112447467,+" ; protein_id "ENSP00000376792.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VTI1A--TCF7L2^ENST00000393077.3" ; transcript_name "VTI1A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
WDR20--MOK HAVANA gene 1409 14936 . + . FI_gene_label "WDR20^ENSG00000140153.18" ; ID "WDR20--MOK^WDR20^ENSG00000140153.18" ; ccdsid "CCDS55942.1" ; exon_id "ENSE00002541358.1" ; exon_number 1 ; gene_id "WDR20--MOK^WDR20^ENSG00000140153.18" ; gene_name WDR20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171753.6" ; havana_transcript "OTTHUMT00000415298.2" ; hgnc_id "HGNC:19667" ; level 2 ; orig_coord_info "chr14,102139924,102140172,+" ; protein_id "ENSP00000299135.6" ; tag basic CCDS ; transcript_id "WDR20--MOK^ENST00000299135.6" ; transcript_name "WDR20-201" ; transcript_support_level 1 ; transcript_type protein_coding
WDR20--MOK HAVANA mRNA 1409 14936 . + . FI_gene_label "WDR20^ENSG00000140153.18" ; ID "WDR20--MOK^ENST00000299135.6" ; Parent "WDR20--MOK^WDR20^ENSG00000140153.18" ; ccdsid "CCDS55942.1" ; exon_id "ENSE00002541358.1" ; exon_number 1 ; gene_id "WDR20--MOK^WDR20^ENSG00000140153.18" ; gene_name WDR20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171753.6" ; havana_transcript "OTTHUMT00000415298.2" ; hgnc_id "HGNC:19667" ; level 2 ; orig_coord_info "chr14,102139924,102140172,+" ; protein_id "ENSP00000299135.6" ; tag basic CCDS ; transcript_id "WDR20--MOK^ENST00000299135.6" ; transcript_name "WDR20-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WDR20--MOK HAVANA gene 24469 48586 . + . FI_gene_label "MOK^ENSG00000080823.23" ; ID "WDR20--MOK^MOK^ENSG00000080823.23" ; ccdsid "CCDS9971.1" ; exon_id "ENSE00002090783.2" ; exon_number 1 ; gene_id "WDR20--MOK^MOK^ENSG00000080823.23" ; gene_name MOK ; gene_type protein_coding ; havana_gene "OTTHUMG00000164896.9" ; havana_transcript "OTTHUMT00000380848.4" ; hgnc_id "HGNC:9833" ; level 2 ; orig_coord_info "chr14,102304962,102304968,-" ; protein_id "ENSP00000355304.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "WDR20--MOK^ENST00000361847.7" ; transcript_name "MOK-201" ; transcript_support_level 1 ; transcript_type protein_coding
WDR20--MOK HAVANA mRNA 24469 48586 . + . FI_gene_label "MOK^ENSG00000080823.23" ; ID "WDR20--MOK^ENST00000361847.7" ; Parent "WDR20--MOK^MOK^ENSG00000080823.23" ; ccdsid "CCDS9971.1" ; exon_id "ENSE00002090783.2" ; exon_number 1 ; gene_id "WDR20--MOK^MOK^ENSG00000080823.23" ; gene_name MOK ; gene_type protein_coding ; havana_gene "OTTHUMG00000164896.9" ; havana_transcript "OTTHUMT00000380848.4" ; hgnc_id "HGNC:9833" ; level 2 ; orig_coord_info "chr14,102304962,102304968,-" ; protein_id "ENSP00000355304.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "WDR20--MOK^ENST00000361847.7" ; transcript_name "MOK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF268--ZNF10 HAVANA gene 1066 10546 . + . FI_gene_label "ZNF268^ENSG00000090612.22" ; ID "ZNF268--ZNF10^ZNF268^ENSG00000090612.22" ; ccdsid "CCDS45012.1" ; exon_id "ENSE00003734567.1" ; exon_number 2 ; gene_id "ZNF268--ZNF10^ZNF268^ENSG00000090612.22" ; gene_name ZNF268 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167946.10" ; havana_transcript "OTTHUMT00000397192.1" ; hgnc_id "HGNC:13061" ; level 2 ; orig_coord_info "chr12,133181998,133182030,+" ; protein_id "ENSP00000228289.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "ZNF268--ZNF10^ENST00000228289.9" ; transcript_name "ZNF268-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF268--ZNF10 HAVANA mRNA 1066 10546 . + . FI_gene_label "ZNF268^ENSG00000090612.22" ; ID "ZNF268--ZNF10^ENST00000228289.9" ; Parent "ZNF268--ZNF10^ZNF268^ENSG00000090612.22" ; ccdsid "CCDS45012.1" ; exon_id "ENSE00003734567.1" ; exon_number 2 ; gene_id "ZNF268--ZNF10^ZNF268^ENSG00000090612.22" ; gene_name ZNF268 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167946.10" ; havana_transcript "OTTHUMT00000397192.1" ; hgnc_id "HGNC:13061" ; level 2 ; orig_coord_info "chr12,133181998,133182030,+" ; protein_id "ENSP00000228289.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "ZNF268--ZNF10^ENST00000228289.9" ; transcript_name "ZNF268-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF268--ZNF10 HAVANA gene 23408 34174 . + . FI_gene_label "ZNF10^ENSG00000256223.6" ; ID "ZNF268--ZNF10^ZNF10^ENSG00000256223.6" ; ccdsid "CCDS9283.1" ; exon_id "ENSE00003472870.1" ; exon_number 2 ; gene_id "ZNF268--ZNF10^ZNF10^ENSG00000256223.6" ; gene_name ZNF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167944.4" ; havana_transcript "OTTHUMT00000397182.2" ; hgnc_id "HGNC:12879" ; level 2 ; orig_coord_info "chr12,133144493,133144525,+" ; protein_id "ENSP00000248211.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF268--ZNF10^ENST00000248211.11" ; transcript_name "ZNF10-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF268--ZNF10 HAVANA mRNA 23408 34174 . + . FI_gene_label "ZNF10^ENSG00000256223.6" ; ID "ZNF268--ZNF10^ENST00000248211.11" ; Parent "ZNF268--ZNF10^ZNF10^ENSG00000256223.6" ; ccdsid "CCDS9283.1" ; exon_id "ENSE00003472870.1" ; exon_number 2 ; gene_id "ZNF268--ZNF10^ZNF10^ENSG00000256223.6" ; gene_name ZNF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167944.4" ; havana_transcript "OTTHUMT00000397182.2" ; hgnc_id "HGNC:12879" ; level 2 ; orig_coord_info "chr12,133144493,133144525,+" ; protein_id "ENSP00000248211.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF268--ZNF10^ENST00000248211.11" ; transcript_name "ZNF10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF708--TMEM91 HAVANA gene 17539 20742 . + . FI_gene_label "TMEM91^ENSG00000142046.15" ; ID "ZNF708--TMEM91^TMEM91^ENSG00000142046.15" ; exon_id "ENSE00003692982.1" ; exon_number 2 ; gene_id "ZNF708--TMEM91^TMEM91^ENSG00000142046.15" ; gene_name TMEM91 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168127.4" ; havana_transcript "OTTHUMT00000398308.2" ; hgnc_id "HGNC:32393" ; level 2 ; orig_coord_info "chr19,41378310,41378519,+" ; protein_id "ENSP00000345589.5" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "ZNF708--TMEM91^ENST00000342187.9" ; transcript_name "TMEM91-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZNF708--TMEM91 HAVANA mRNA 17539 20742 . + . FI_gene_label "TMEM91^ENSG00000142046.15" ; ID "ZNF708--TMEM91^ENST00000342187.9" ; Parent "ZNF708--TMEM91^TMEM91^ENSG00000142046.15" ; exon_id "ENSE00003692982.1" ; exon_number 2 ; gene_id "ZNF708--TMEM91^TMEM91^ENSG00000142046.15" ; gene_name TMEM91 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168127.4" ; havana_transcript "OTTHUMT00000398308.2" ; hgnc_id "HGNC:32393" ; level 2 ; orig_coord_info "chr19,41378310,41378519,+" ; protein_id "ENSP00000345589.5" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "ZNF708--TMEM91^ENST00000342187.9" ; transcript_name "TMEM91-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZNF708--TMEM91 HAVANA gene 1016 10325 . + . FI_gene_label "ZNF708^ENSG00000182141.10" ; ID "ZNF708--TMEM91^ZNF708^ENSG00000182141.10" ; ccdsid "CCDS32980.1" ; exon_id "ENSE00001480852.1" ; exon_number 1 ; gene_id "ZNF708--TMEM91^ZNF708^ENSG00000182141.10" ; gene_name ZNF708 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182841.3" ; havana_transcript "OTTHUMT00000463953.1" ; hgnc_id "HGNC:12945" ; level 2 ; orig_coord_info "chr19,21329210,21329212,-" ; protein_id "ENSP00000349401.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF708--TMEM91^ENST00000356929.3" ; transcript_name "ZNF708-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZNF708--TMEM91 HAVANA mRNA 1016 10325 . + . FI_gene_label "ZNF708^ENSG00000182141.10" ; ID "ZNF708--TMEM91^ENST00000356929.3" ; Parent "ZNF708--TMEM91^ZNF708^ENSG00000182141.10" ; ccdsid "CCDS32980.1" ; exon_id "ENSE00001480852.1" ; exon_number 1 ; gene_id "ZNF708--TMEM91^ZNF708^ENSG00000182141.10" ; gene_name ZNF708 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182841.3" ; havana_transcript "OTTHUMT00000463953.1" ; hgnc_id "HGNC:12945" ; level 2 ; orig_coord_info "chr19,21329210,21329212,-" ; protein_id "ENSP00000349401.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF708--TMEM91^ENST00000356929.3" ; transcript_name "ZNF708-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZNRF2--GARS1 HAVANA gene 1001 9403 . + . FI_gene_label "ZNRF2^ENSG00000180233.11" ; ID "ZNRF2--GARS1^ZNRF2^ENSG00000180233.11" ; ccdsid "CCDS5426.1" ; exon_id "ENSE00001375265.2" ; exon_number 1 ; gene_id "ZNRF2--GARS1^ZNRF2^ENSG00000180233.11" ; gene_name ZNRF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097759.4" ; havana_transcript "OTTHUMT00000214992.2" ; hgnc_id "HGNC:22316" ; level 2 ; orig_coord_info "chr7,30285358,30285826,+" ; protein_id "ENSP00000323879.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNRF2--GARS1^ENST00000323037.5" ; transcript_name "ZNRF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNRF2--GARS1 HAVANA mRNA 1001 9403 . + . FI_gene_label "ZNRF2^ENSG00000180233.11" ; ID "ZNRF2--GARS1^ENST00000323037.5" ; Parent "ZNRF2--GARS1^ZNRF2^ENSG00000180233.11" ; ccdsid "CCDS5426.1" ; exon_id "ENSE00001375265.2" ; exon_number 1 ; gene_id "ZNRF2--GARS1^ZNRF2^ENSG00000180233.11" ; gene_name ZNRF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097759.4" ; havana_transcript "OTTHUMT00000214992.2" ; hgnc_id "HGNC:22316" ; level 2 ; orig_coord_info "chr7,30285358,30285826,+" ; protein_id "ENSP00000323879.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNRF2--GARS1^ENST00000323037.5" ; transcript_name "ZNRF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNRF2--GARS1 HAVANA gene 13508 42932 . + . FI_gene_label "GARS1^ENSG00000106105.15" ; ID "ZNRF2--GARS1^GARS1^ENSG00000106105.15" ; ccdsid "CCDS43564.1" ; exon_id "ENSE00000832199.5" ; exon_number 1 ; gene_id "ZNRF2--GARS1^GARS1^ENSG00000106105.15" ; gene_name GARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152769.2" ; havana_transcript "OTTHUMT00000327735.2" ; hgnc_id "HGNC:4162" ; level 2 ; orig_coord_info "chr7,30594922,30595143,+" ; protein_id "ENSP00000373918.3" ; tag non_canonical_U12 basic MANE_Select appris_principal_2 CCDS ; transcript_id "ZNRF2--GARS1^ENST00000389266.8" ; transcript_name "GARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNRF2--GARS1 HAVANA mRNA 13508 42932 . + . FI_gene_label "GARS1^ENSG00000106105.15" ; ID "ZNRF2--GARS1^ENST00000389266.8" ; Parent "ZNRF2--GARS1^GARS1^ENSG00000106105.15" ; ccdsid "CCDS43564.1" ; exon_id "ENSE00000832199.5" ; exon_number 1 ; gene_id "ZNRF2--GARS1^GARS1^ENSG00000106105.15" ; gene_name GARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152769.2" ; havana_transcript "OTTHUMT00000327735.2" ; hgnc_id "HGNC:4162" ; level 2 ; orig_coord_info "chr7,30594922,30595143,+" ; protein_id "ENSP00000373918.3" ; tag non_canonical_U12 basic MANE_Select appris_principal_2 CCDS ; transcript_id "ZNRF2--GARS1^ENST00000389266.8" ; transcript_name "GARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC011487.2--ANKRD27 HAVANA gene 1001 8109 . + . FI_gene_label "AC011487.2^ENSG00000268864.4" ; ID "AC011487.2--ANKRD27^AC011487.2^ENSG00000268864.4" ; exon_id "ENSE00003054899.1" ; exon_number 1 ; gene_id "AC011487.2--ANKRD27^AC011487.2^ENSG00000268864.4" ; gene_name "AC011487.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000183076.2" ; havana_transcript "OTTHUMT00000464984.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr19,53608269,53608451,-" ; tag basic ; transcript_id "AC011487.2--ANKRD27^ENST00000599707.2" ; transcript_name "AC011487.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AC011487.2--ANKRD27 HAVANA RNA 1001 8109 . + . FI_gene_label "AC011487.2^ENSG00000268864.4" ; ID "AC011487.2--ANKRD27^ENST00000599707.2" ; Parent "AC011487.2--ANKRD27^AC011487.2^ENSG00000268864.4" ; exon_id "ENSE00003054899.1" ; exon_number 1 ; gene_id "AC011487.2--ANKRD27^AC011487.2^ENSG00000268864.4" ; gene_name "AC011487.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000183076.2" ; havana_transcript "OTTHUMT00000464984.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr19,53608269,53608451,-" ; tag basic ; transcript_id "AC011487.2--ANKRD27^ENST00000599707.2" ; transcript_name "AC011487.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.2--AP2B1 HAVANA gene 1001 1759 . + . FI_gene_label "AC015911.2^ENSG00000267035.1" ; ID "AC015911.2--AP2B1^AC015911.2^ENSG00000267035.1" ; exon_id "ENSE00002922555.1" ; exon_number 1 ; gene_id "AC015911.2--AP2B1^AC015911.2^ENSG00000267035.1" ; gene_name "AC015911.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179911.1" ; havana_transcript "OTTHUMT00000448927.1" ; level 2 ; orig_coord_info "chr17,35540706,35540797,-" ; tag basic ; transcript_id "AC015911.2--AP2B1^ENST00000585536.1" ; transcript_name "AC015911.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC015911.2--AP2B1 HAVANA RNA 1001 1759 . + . FI_gene_label "AC015911.2^ENSG00000267035.1" ; ID "AC015911.2--AP2B1^ENST00000585536.1" ; Parent "AC015911.2--AP2B1^AC015911.2^ENSG00000267035.1" ; exon_id "ENSE00002922555.1" ; exon_number 1 ; gene_id "AC015911.2--AP2B1^AC015911.2^ENSG00000267035.1" ; gene_name "AC015911.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179911.1" ; havana_transcript "OTTHUMT00000448927.1" ; level 2 ; orig_coord_info "chr17,35540706,35540797,-" ; tag basic ; transcript_id "AC015911.2--AP2B1^ENST00000585536.1" ; transcript_name "AC015911.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC015911.9--AP2B1 HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--AP2B1^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--AP2B1^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--AP2B1^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--AP2B1 HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--AP2B1^ENST00000650652.2" ; Parent "AC015911.9--AP2B1^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--AP2B1^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--AP2B1^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC060780.1--ANKS1A HAVANA gene 1635 10841 . + . FI_gene_label "AC060780.1^ENSG00000267002.4" ; ID "AC060780.1--ANKS1A^AC060780.1^ENSG00000267002.4" ; exon_id "ENSE00002943744.1" ; exon_number 1 ; gene_id "AC060780.1--ANKS1A^AC060780.1^ENSG00000267002.4" ; gene_name "AC060780.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180875.4" ; havana_transcript "OTTHUMT00000453455.3" ; level 2 ; orig_coord_info "chr17,43170126,43170403,-" ; tag 3_standard_supported_extension ; transcript_id "AC060780.1--ANKS1A^ENST00000590740.2" ; transcript_name "AC060780.1-203" ; transcript_support_level 1 ; transcript_type lncRNA
AC060780.1--ANKS1A HAVANA RNA 1635 10841 . + . FI_gene_label "AC060780.1^ENSG00000267002.4" ; ID "AC060780.1--ANKS1A^ENST00000590740.2" ; Parent "AC060780.1--ANKS1A^AC060780.1^ENSG00000267002.4" ; exon_id "ENSE00002943744.1" ; exon_number 1 ; gene_id "AC060780.1--ANKS1A^AC060780.1^ENSG00000267002.4" ; gene_name "AC060780.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180875.4" ; havana_transcript "OTTHUMT00000453455.3" ; level 2 ; orig_coord_info "chr17,43170126,43170403,-" ; tag 3_standard_supported_extension ; transcript_id "AC060780.1--ANKS1A^ENST00000590740.2" ; transcript_name "AC060780.1-203" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
AC084756.2--NF1P1 HAVANA gene 7391 20259 . + . FI_gene_label "NF1P1^ENSG00000270831.1" ; ID "AC084756.2--NF1P1^NF1P1^ENSG00000270831.1" ; exon_id "ENSE00003685808.1" ; exon_number 1 ; gene_id "AC084756.2--NF1P1^NF1P1^ENSG00000270831.1" ; gene_name NF1P1 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000184188.2" ; havana_transcript "OTTHUMT00000468257.2" ; hgnc_id "HGNC:7772" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr15,20935435,20935658,-" ; tag basic ; transcript_id "AC084756.2--NF1P1^ENST00000604105.1" ; transcript_name "NF1P1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC084756.2--NF1P1 HAVANA RNA 7391 20259 . + . FI_gene_label "NF1P1^ENSG00000270831.1" ; ID "AC084756.2--NF1P1^ENST00000604105.1" ; Parent "AC084756.2--NF1P1^NF1P1^ENSG00000270831.1" ; exon_id "ENSE00003685808.1" ; exon_number 1 ; gene_id "AC084756.2--NF1P1^NF1P1^ENSG00000270831.1" ; gene_name NF1P1 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000184188.2" ; havana_transcript "OTTHUMT00000468257.2" ; hgnc_id "HGNC:7772" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr15,20935435,20935658,-" ; tag basic ; transcript_id "AC084756.2--NF1P1^ENST00000604105.1" ; transcript_name "NF1P1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
CASC22--TOX3 HAVANA gene 1001 8593 . + . FI_gene_label "CASC22^ENSG00000260887.3" ; ID "CASC22--TOX3^CASC22^ENSG00000260887.3" ; exon_id "ENSE00002605272.1" ; exon_number 1 ; gene_id "CASC22--TOX3^CASC22^ENSG00000260887.3" ; gene_name CASC22 ; gene_type lncRNA ; havana_gene "OTTHUMG00000173239.13" ; havana_transcript "OTTHUMT00000422569.1" ; hgnc_id "HGNC:50627" ; level 2 ; orig_coord_info "chr16,52258564,52258583,+" ; transcript_id "CASC22--TOX3^ENST00000569713.1" ; transcript_name "CASC22-201" ; transcript_support_level 5 ; transcript_type lncRNA
CASC22--TOX3 HAVANA RNA 1001 8593 . + . FI_gene_label "CASC22^ENSG00000260887.3" ; ID "CASC22--TOX3^ENST00000569713.1" ; Parent "CASC22--TOX3^CASC22^ENSG00000260887.3" ; exon_id "ENSE00002605272.1" ; exon_number 1 ; gene_id "CASC22--TOX3^CASC22^ENSG00000260887.3" ; gene_name CASC22 ; gene_type lncRNA ; havana_gene "OTTHUMG00000173239.13" ; havana_transcript "OTTHUMT00000422569.1" ; hgnc_id "HGNC:50627" ; level 2 ; orig_coord_info "chr16,52258564,52258583,+" ; transcript_id "CASC22--TOX3^ENST00000569713.1" ; transcript_name "CASC22-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
DISC1FP1--TOM1L2 HAVANA gene 1082 15241 . + . FI_gene_label "DISC1FP1^ENSG00000261645.7" ; ID "DISC1FP1--TOM1L2^DISC1FP1^ENSG00000261645.7" ; exon_id "ENSE00002629244.1" ; exon_number 1 ; gene_id "DISC1FP1--TOM1L2^DISC1FP1^ENSG00000261645.7" ; gene_name DISC1FP1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000167309.5" ; havana_transcript "OTTHUMT00000421420.2" ; hgnc_id "HGNC:33625" ; level 2 ; orig_coord_info "chr11,90251285,90251317,+" ; tag basic ; transcript_id "DISC1FP1--TOM1L2^ENST00000561596.5" ; transcript_name "DISC1FP1-201" ; transcript_support_level 5 ; transcript_type lncRNA
DISC1FP1--TOM1L2 HAVANA RNA 1082 15241 . + . FI_gene_label "DISC1FP1^ENSG00000261645.7" ; ID "DISC1FP1--TOM1L2^ENST00000561596.5" ; Parent "DISC1FP1--TOM1L2^DISC1FP1^ENSG00000261645.7" ; exon_id "ENSE00002629244.1" ; exon_number 1 ; gene_id "DISC1FP1--TOM1L2^DISC1FP1^ENSG00000261645.7" ; gene_name DISC1FP1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000167309.5" ; havana_transcript "OTTHUMT00000421420.2" ; hgnc_id "HGNC:33625" ; level 2 ; orig_coord_info "chr11,90251285,90251317,+" ; tag basic ; transcript_id "DISC1FP1--TOM1L2^ENST00000561596.5" ; transcript_name "DISC1FP1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
EFL1--GOLGA6L11P HAVANA gene 28063 33687 . + . FI_gene_label "GOLGA6L11P^ENSG00000223698.3" ; ID "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; exon_id "ENSE00001742768.1" ; exon_number 1 ; gene_id "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; gene_name GOLGA6L11P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000045042.2" ; havana_transcript "OTTHUMT00000104689.2" ; hgnc_id "HGNC:23958" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrY,24168187,24168270,+" ; tag pseudo_consens basic ; transcript_id "EFL1--GOLGA6L11P^ENST00000417252.2" ; transcript_name "GOLGA6L11P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
EFL1--GOLGA6L11P HAVANA RNA 28063 33687 . + . FI_gene_label "GOLGA6L11P^ENSG00000223698.3" ; ID "EFL1--GOLGA6L11P^ENST00000417252.2" ; Parent "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; exon_id "ENSE00001742768.1" ; exon_number 1 ; gene_id "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; gene_name GOLGA6L11P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000045042.2" ; havana_transcript "OTTHUMT00000104689.2" ; hgnc_id "HGNC:23958" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrY,24168187,24168270,+" ; tag pseudo_consens basic ; transcript_id "EFL1--GOLGA6L11P^ENST00000417252.2" ; transcript_name "GOLGA6L11P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
ERBB4--AC093865.1 HAVANA gene 46081 50513 . + . FI_gene_label "AC093865.1^ENSG00000273118.1" ; ID "ERBB4--AC093865.1^AC093865.1^ENSG00000273118.1" ; exon_id "ENSE00001727631.1" ; exon_number 1 ; gene_id "ERBB4--AC093865.1^AC093865.1^ENSG00000273118.1" ; gene_name "AC093865.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154820.1" ; havana_transcript "OTTHUMT00000337265.1" ; level 2 ; orig_coord_info "chr2,213021465,213021545,-" ; tag basic ; transcript_id "ERBB4--AC093865.1^ENST00000415387.1" ; transcript_name "AC093865.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
ERBB4--AC093865.1 HAVANA RNA 46081 50513 . + . FI_gene_label "AC093865.1^ENSG00000273118.1" ; ID "ERBB4--AC093865.1^ENST00000415387.1" ; Parent "ERBB4--AC093865.1^AC093865.1^ENSG00000273118.1" ; exon_id "ENSE00001727631.1" ; exon_number 1 ; gene_id "ERBB4--AC093865.1^AC093865.1^ENSG00000273118.1" ; gene_name "AC093865.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154820.1" ; havana_transcript "OTTHUMT00000337265.1" ; level 2 ; orig_coord_info "chr2,213021465,213021545,-" ; tag basic ; transcript_id "ERBB4--AC093865.1^ENST00000415387.1" ; transcript_name "AC093865.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
GRAP--OR5G1P HAVANA gene 11918 12863 . + . FI_gene_label "OR5G1P^ENSG00000181296.3" ; ID "GRAP--OR5G1P^OR5G1P^ENSG00000181296.3" ; exon_id "ENSE00002184864.1" ; exon_number 1 ; gene_id "GRAP--OR5G1P^OR5G1P^ENSG00000181296.3" ; gene_name OR5G1P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000167016.1" ; havana_transcript "OTTHUMT00000392440.1" ; hgnc_id "HGNC:8344" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,56775261,56776206,-" ; tag basic ; transcript_id "GRAP--OR5G1P^ENST00000525221.1" ; transcript_name "OR5G1P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
GRAP--OR5G1P HAVANA RNA 11918 12863 . + . FI_gene_label "OR5G1P^ENSG00000181296.3" ; ID "GRAP--OR5G1P^ENST00000525221.1" ; Parent "GRAP--OR5G1P^OR5G1P^ENSG00000181296.3" ; exon_id "ENSE00002184864.1" ; exon_number 1 ; gene_id "GRAP--OR5G1P^OR5G1P^ENSG00000181296.3" ; gene_name OR5G1P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000167016.1" ; havana_transcript "OTTHUMT00000392440.1" ; hgnc_id "HGNC:8344" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,56775261,56776206,-" ; tag basic ; transcript_id "GRAP--OR5G1P^ENST00000525221.1" ; transcript_name "OR5G1P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
GRAP--OR9G2P HAVANA gene 11918 12797 . + . FI_gene_label "OR9G2P^ENSG00000254825.1" ; ID "GRAP--OR9G2P^OR9G2P^ENSG00000254825.1" ; exon_id "ENSE00002157457.1" ; exon_number 1 ; gene_id "GRAP--OR9G2P^OR9G2P^ENSG00000254825.1" ; gene_name OR9G2P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000166933.1" ; havana_transcript "OTTHUMT00000391946.1" ; hgnc_id "HGNC:15320" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,56751023,56751902,-" ; tag basic ; transcript_id "GRAP--OR9G2P^ENST00000533326.1" ; transcript_name "OR9G2P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
GRAP--OR9G2P HAVANA RNA 11918 12797 . + . FI_gene_label "OR9G2P^ENSG00000254825.1" ; ID "GRAP--OR9G2P^ENST00000533326.1" ; Parent "GRAP--OR9G2P^OR9G2P^ENSG00000254825.1" ; exon_id "ENSE00002157457.1" ; exon_number 1 ; gene_id "GRAP--OR9G2P^OR9G2P^ENSG00000254825.1" ; gene_name OR9G2P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000166933.1" ; havana_transcript "OTTHUMT00000391946.1" ; hgnc_id "HGNC:15320" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,56751023,56751902,-" ; tag basic ; transcript_id "GRAP--OR9G2P^ENST00000533326.1" ; transcript_name "OR9G2P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
GTF2IP4--AC211476.4 HAVANA gene 27733 32607 . + . FI_gene_label "AC211476.4^ENSG00000277125.1" ; ID "GTF2IP4--AC211476.4^AC211476.4^ENSG00000277125.1" ; exon_id "ENSE00001414173.3" ; exon_number 1 ; gene_id "GTF2IP4--AC211476.4^AC211476.4^ENSG00000277125.1" ; gene_name "AC211476.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188241.2" ; havana_transcript "OTTHUMT00000476739.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73065529,73065670,+" ; tag basic ; transcript_id "GTF2IP4--AC211476.4^ENST00000275546.4" ; transcript_name "AC211476.4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
GTF2IP4--AC211476.4 HAVANA RNA 27733 32607 . + . FI_gene_label "AC211476.4^ENSG00000277125.1" ; ID "GTF2IP4--AC211476.4^ENST00000275546.4" ; Parent "GTF2IP4--AC211476.4^AC211476.4^ENSG00000277125.1" ; exon_id "ENSE00001414173.3" ; exon_number 1 ; gene_id "GTF2IP4--AC211476.4^AC211476.4^ENSG00000277125.1" ; gene_name "AC211476.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188241.2" ; havana_transcript "OTTHUMT00000476739.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73065529,73065670,+" ; tag basic ; transcript_id "GTF2IP4--AC211476.4^ENST00000275546.4" ; transcript_name "AC211476.4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
GTF2IP4--AC211476.4 HAVANA gene 2407 22890 . + . FI_gene_label "GTF2IP4^ENSG00000233369.7" ; ID "GTF2IP4--AC211476.4^GTF2IP4^ENSG00000233369.7" ; exon_id "ENSE00002456396.1" ; exon_number 1 ; gene_id "GTF2IP4--AC211476.4^GTF2IP4^ENSG00000233369.7" ; gene_name GTF2IP4 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000156702.3" ; havana_transcript "OTTHUMT00000345352.2" ; hgnc_id "HGNC:51716" ; level 2 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr7,73175415,73175525,+" ; tag basic ; transcript_id "GTF2IP4--AC211476.4^ENST00000453092.3" ; transcript_name "GTF2IP4-201" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
GTF2IP4--AC211476.4 HAVANA RNA 2407 22890 . + . FI_gene_label "GTF2IP4^ENSG00000233369.7" ; ID "GTF2IP4--AC211476.4^ENST00000453092.3" ; Parent "GTF2IP4--AC211476.4^GTF2IP4^ENSG00000233369.7" ; exon_id "ENSE00002456396.1" ; exon_number 1 ; gene_id "GTF2IP4--AC211476.4^GTF2IP4^ENSG00000233369.7" ; gene_name GTF2IP4 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000156702.3" ; havana_transcript "OTTHUMT00000345352.2" ; hgnc_id "HGNC:51716" ; level 2 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr7,73175415,73175525,+" ; tag basic ; transcript_id "GTF2IP4--AC211476.4^ENST00000453092.3" ; transcript_name "GTF2IP4-201" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
L1 and L2 created:
IGL-@-ext--WNT6 SuperLocus-ext gene 1001 893101 . + . FI_gene_label "IGL-@-ext^IGL-.g@-ext" ; ID "IGL-@-ext--WNT6^IGL-@-ext^IGL-.g@-ext" ; gene_id "IGL-@-ext--WNT6^IGL-@-ext^IGL-.g@-ext" ; gene_name "IGL-@-ext" ; orig_coord_info "chr22,22030934,22923034,-" ; transcript_id "IGL-@-ext--WNT6^IGL-.t@-ext"
IGL-@-ext--WNT6 SuperLocus-ext RNA 1001 893101 . + . FI_gene_label "IGL-@-ext^IGL-.g@-ext" ; ID "IGL-@-ext--WNT6^IGL-.t@-ext" ; Parent "IGL-@-ext--WNT6^IGL-@-ext^IGL-.g@-ext" ; gene_id "IGL-@-ext--WNT6^IGL-@-ext^IGL-.g@-ext" ; gene_name "IGL-@-ext" ; orig_coord_info "chr22,22030934,22923034,-" ; transcript_id "IGL-@-ext--WNT6^IGL-.t@-ext"
L1 and L2 created:
IKZF2--AC093865.1 HAVANA gene 27900 32332 . + . FI_gene_label "AC093865.1^ENSG00000273118.1" ; ID "IKZF2--AC093865.1^AC093865.1^ENSG00000273118.1" ; exon_id "ENSE00001727631.1" ; exon_number 1 ; gene_id "IKZF2--AC093865.1^AC093865.1^ENSG00000273118.1" ; gene_name "AC093865.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154820.1" ; havana_transcript "OTTHUMT00000337265.1" ; level 2 ; orig_coord_info "chr2,213021465,213021545,-" ; tag basic ; transcript_id "IKZF2--AC093865.1^ENST00000415387.1" ; transcript_name "AC093865.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
IKZF2--AC093865.1 HAVANA RNA 27900 32332 . + . FI_gene_label "AC093865.1^ENSG00000273118.1" ; ID "IKZF2--AC093865.1^ENST00000415387.1" ; Parent "IKZF2--AC093865.1^AC093865.1^ENSG00000273118.1" ; exon_id "ENSE00001727631.1" ; exon_number 1 ; gene_id "IKZF2--AC093865.1^AC093865.1^ENSG00000273118.1" ; gene_name "AC093865.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154820.1" ; havana_transcript "OTTHUMT00000337265.1" ; level 2 ; orig_coord_info "chr2,213021465,213021545,-" ; tag basic ; transcript_id "IKZF2--AC093865.1^ENST00000415387.1" ; transcript_name "AC093865.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
IKZF2--SGO1-AS1 HAVANA gene 27942 30649 . + . FI_gene_label "SGO1-AS1^ENSG00000231304.2" ; ID "IKZF2--SGO1-AS1^SGO1-AS1^ENSG00000231304.2" ; exon_id "ENSE00001701431.1" ; exon_number 1 ; gene_id "IKZF2--SGO1-AS1^SGO1-AS1^ENSG00000231304.2" ; gene_name "SGO1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000155532.2" ; havana_transcript "OTTHUMT00000340539.1" ; hgnc_id "HGNC:41081" ; level 2 ; orig_coord_info "chr3,20174286,20174525,+" ; tag basic ; transcript_id "IKZF2--SGO1-AS1^ENST00000441442.1" ; transcript_name "SGO1-AS1-201" ; transcript_support_level 4 ; transcript_type lncRNA
IKZF2--SGO1-AS1 HAVANA RNA 27942 30649 . + . FI_gene_label "SGO1-AS1^ENSG00000231304.2" ; ID "IKZF2--SGO1-AS1^ENST00000441442.1" ; Parent "IKZF2--SGO1-AS1^SGO1-AS1^ENSG00000231304.2" ; exon_id "ENSE00001701431.1" ; exon_number 1 ; gene_id "IKZF2--SGO1-AS1^SGO1-AS1^ENSG00000231304.2" ; gene_name "SGO1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000155532.2" ; havana_transcript "OTTHUMT00000340539.1" ; hgnc_id "HGNC:41081" ; level 2 ; orig_coord_info "chr3,20174286,20174525,+" ; tag basic ; transcript_id "IKZF2--SGO1-AS1^ENST00000441442.1" ; transcript_name "SGO1-AS1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
KDM2A--AC104534.1 HAVANA gene 35177 36742 . + . FI_gene_label "AC104534.1^ENSG00000268756.1" ; ID "KDM2A--AC104534.1^AC104534.1^ENSG00000268756.1" ; exon_id "ENSE00003109066.1" ; exon_number 1 ; gene_id "KDM2A--AC104534.1^AC104534.1^ENSG00000268756.1" ; gene_name "AC104534.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000182611.1" ; havana_transcript "OTTHUMT00000462669.1" ; level 2 ; orig_coord_info "chr19,38820166,38820492,+" ; tag basic ; transcript_id "KDM2A--AC104534.1^ENST00000594558.1" ; transcript_name "AC104534.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
KDM2A--AC104534.1 HAVANA RNA 35177 36742 . + . FI_gene_label "AC104534.1^ENSG00000268756.1" ; ID "KDM2A--AC104534.1^ENST00000594558.1" ; Parent "KDM2A--AC104534.1^AC104534.1^ENSG00000268756.1" ; exon_id "ENSE00003109066.1" ; exon_number 1 ; gene_id "KDM2A--AC104534.1^AC104534.1^ENSG00000268756.1" ; gene_name "AC104534.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000182611.1" ; havana_transcript "OTTHUMT00000462669.1" ; level 2 ; orig_coord_info "chr19,38820166,38820492,+" ; tag basic ; transcript_id "KDM2A--AC104534.1^ENST00000594558.1" ; transcript_name "AC104534.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
LINC02835--RYR3 HAVANA gene 1001 3858 . + . FI_gene_label "LINC02835^ENSG00000285711.1" ; ID "LINC02835--RYR3^LINC02835^ENSG00000285711.1" ; exon_id "ENSE00003831505.1" ; exon_number 1 ; gene_id "LINC02835--RYR3^LINC02835^ENSG00000285711.1" ; gene_name LINC02835 ; gene_type lncRNA ; havana_gene "OTTHUMG00000193080.1" ; havana_transcript "OTTHUMT00000500087.1" ; hgnc_id "HGNC:54369" ; level 2 ; orig_coord_info "chr4,65241182,65241814,-" ; tag basic ; transcript_id "LINC02835--RYR3^ENST00000649562.1" ; transcript_name "LINC02835-201" ; transcript_type lncRNA
LINC02835--RYR3 HAVANA RNA 1001 3858 . + . FI_gene_label "LINC02835^ENSG00000285711.1" ; ID "LINC02835--RYR3^ENST00000649562.1" ; Parent "LINC02835--RYR3^LINC02835^ENSG00000285711.1" ; exon_id "ENSE00003831505.1" ; exon_number 1 ; gene_id "LINC02835--RYR3^LINC02835^ENSG00000285711.1" ; gene_name LINC02835 ; gene_type lncRNA ; havana_gene "OTTHUMG00000193080.1" ; havana_transcript "OTTHUMT00000500087.1" ; hgnc_id "HGNC:54369" ; level 2 ; orig_coord_info "chr4,65241182,65241814,-" ; tag basic ; transcript_id "LINC02835--RYR3^ENST00000649562.1" ; transcript_name "LINC02835-201" ; transcript_type lncRNA
L1 and L2 created:
LRMDA--PPP3CB-AS1 HAVANA gene 30471 36989 . + . FI_gene_label "PPP3CB-AS1^ENSG00000221817.10" ; ID "LRMDA--PPP3CB-AS1^PPP3CB-AS1^ENSG00000221817.10" ; exon_id "ENSE00001618002.1" ; exon_number 1 ; gene_id "LRMDA--PPP3CB-AS1^PPP3CB-AS1^ENSG00000221817.10" ; gene_name "PPP3CB-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018470.8" ; havana_transcript "OTTHUMT00000048665.3" ; hgnc_id "HGNC:50750" ; level 2 ; orig_coord_info "chr10,73495525,73495817,+" ; tag TAGENE ; transcript_id "LRMDA--PPP3CB-AS1^ENST00000422977.2" ; transcript_name "PPP3CB-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
LRMDA--PPP3CB-AS1 HAVANA RNA 30471 36989 . + . FI_gene_label "PPP3CB-AS1^ENSG00000221817.10" ; ID "LRMDA--PPP3CB-AS1^ENST00000422977.2" ; Parent "LRMDA--PPP3CB-AS1^PPP3CB-AS1^ENSG00000221817.10" ; exon_id "ENSE00001618002.1" ; exon_number 1 ; gene_id "LRMDA--PPP3CB-AS1^PPP3CB-AS1^ENSG00000221817.10" ; gene_name "PPP3CB-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018470.8" ; havana_transcript "OTTHUMT00000048665.3" ; hgnc_id "HGNC:50750" ; level 2 ; orig_coord_info "chr10,73495525,73495817,+" ; tag TAGENE ; transcript_id "LRMDA--PPP3CB-AS1^ENST00000422977.2" ; transcript_name "PPP3CB-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
MACF1--GUSBP1 HAVANA gene 136382 146104 . + . FI_gene_label "GUSBP1^ENSG00000183666.17" ; ID "MACF1--GUSBP1^GUSBP1^ENSG00000183666.17" ; exon_id "ENSE00002021272.1" ; exon_number 1 ; gene_id "MACF1--GUSBP1^GUSBP1^ENSG00000183666.17" ; gene_name GUSBP1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161915.5" ; havana_transcript "OTTHUMT00000366371.3" ; hgnc_id "HGNC:13670" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,21459560,21459584,+" ; tag basic ; transcript_id "MACF1--GUSBP1^ENST00000449061.2" ; transcript_name "GUSBP1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
MACF1--GUSBP1 HAVANA RNA 136382 146104 . + . FI_gene_label "GUSBP1^ENSG00000183666.17" ; ID "MACF1--GUSBP1^ENST00000449061.2" ; Parent "MACF1--GUSBP1^GUSBP1^ENSG00000183666.17" ; exon_id "ENSE00002021272.1" ; exon_number 1 ; gene_id "MACF1--GUSBP1^GUSBP1^ENSG00000183666.17" ; gene_name GUSBP1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161915.5" ; havana_transcript "OTTHUMT00000366371.3" ; hgnc_id "HGNC:13670" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,21459560,21459584,+" ; tag basic ; transcript_id "MACF1--GUSBP1^ENST00000449061.2" ; transcript_name "GUSBP1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
MYO18A--AL513321.2 HAVANA gene 52161 55081 . + . FI_gene_label "AL513321.2^ENSG00000282906.1" ; ID "MYO18A--AL513321.2^AL513321.2^ENSG00000282906.1" ; exon_id "ENSE00003787401.1" ; exon_number 1 ; gene_id "MYO18A--AL513321.2^AL513321.2^ENSG00000282906.1" ; gene_name "AL513321.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000191609.1" ; havana_transcript "OTTHUMT00000488832.1" ; level 2 ; orig_coord_info "chr10,65134495,65134674,+" ; tag RNA_Seq_supported_only basic ; transcript_id "MYO18A--AL513321.2^ENST00000634479.1" ; transcript_name "AL513321.2-202" ; transcript_support_level 5 ; transcript_type lncRNA
MYO18A--AL513321.2 HAVANA RNA 52161 55081 . + . FI_gene_label "AL513321.2^ENSG00000282906.1" ; ID "MYO18A--AL513321.2^ENST00000634479.1" ; Parent "MYO18A--AL513321.2^AL513321.2^ENSG00000282906.1" ; exon_id "ENSE00003787401.1" ; exon_number 1 ; gene_id "MYO18A--AL513321.2^AL513321.2^ENSG00000282906.1" ; gene_name "AL513321.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000191609.1" ; havana_transcript "OTTHUMT00000488832.1" ; level 2 ; orig_coord_info "chr10,65134495,65134674,+" ; tag RNA_Seq_supported_only basic ; transcript_id "MYO18A--AL513321.2^ENST00000634479.1" ; transcript_name "AL513321.2-202" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
PANK2--AP000866.1 HAVANA gene 21668 33387 . + . FI_gene_label "AP000866.1^ENSG00000245498.7" ; ID "PANK2--AP000866.1^AP000866.1^ENSG00000245498.7" ; exon_id "ENSE00001965755.1" ; exon_number 1 ; gene_id "PANK2--AP000866.1^AP000866.1^ENSG00000245498.7" ; gene_name "AP000866.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166205.2" ; havana_transcript "OTTHUMT00000388382.1" ; level 1 ; orig_coord_info "chr11,124800450,124801256,+" ; tag exp_conf ; transcript_id "PANK2--AP000866.1^ENST00000499143.6" ; transcript_name "AP000866.1-205" ; transcript_support_level 1 ; transcript_type lncRNA
PANK2--AP000866.1 HAVANA RNA 21668 33387 . + . FI_gene_label "AP000866.1^ENSG00000245498.7" ; ID "PANK2--AP000866.1^ENST00000499143.6" ; Parent "PANK2--AP000866.1^AP000866.1^ENSG00000245498.7" ; exon_id "ENSE00001965755.1" ; exon_number 1 ; gene_id "PANK2--AP000866.1^AP000866.1^ENSG00000245498.7" ; gene_name "AP000866.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166205.2" ; havana_transcript "OTTHUMT00000388382.1" ; level 1 ; orig_coord_info "chr11,124800450,124801256,+" ; tag exp_conf ; transcript_id "PANK2--AP000866.1^ENST00000499143.6" ; transcript_name "AP000866.1-205" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
PPP3CB-AS1--TMEM254 HAVANA gene 1001 7519 . + . FI_gene_label "PPP3CB-AS1^ENSG00000221817.10" ; ID "PPP3CB-AS1--TMEM254^PPP3CB-AS1^ENSG00000221817.10" ; exon_id "ENSE00001618002.1" ; exon_number 1 ; gene_id "PPP3CB-AS1--TMEM254^PPP3CB-AS1^ENSG00000221817.10" ; gene_name "PPP3CB-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018470.8" ; havana_transcript "OTTHUMT00000048665.3" ; hgnc_id "HGNC:50750" ; level 2 ; orig_coord_info "chr10,73495525,73495817,+" ; tag TAGENE ; transcript_id "PPP3CB-AS1--TMEM254^ENST00000422977.2" ; transcript_name "PPP3CB-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
PPP3CB-AS1--TMEM254 HAVANA RNA 1001 7519 . + . FI_gene_label "PPP3CB-AS1^ENSG00000221817.10" ; ID "PPP3CB-AS1--TMEM254^ENST00000422977.2" ; Parent "PPP3CB-AS1--TMEM254^PPP3CB-AS1^ENSG00000221817.10" ; exon_id "ENSE00001618002.1" ; exon_number 1 ; gene_id "PPP3CB-AS1--TMEM254^PPP3CB-AS1^ENSG00000221817.10" ; gene_name "PPP3CB-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018470.8" ; havana_transcript "OTTHUMT00000048665.3" ; hgnc_id "HGNC:50750" ; level 2 ; orig_coord_info "chr10,73495525,73495817,+" ; tag TAGENE ; transcript_id "PPP3CB-AS1--TMEM254^ENST00000422977.2" ; transcript_name "PPP3CB-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
PPP3R1--AC087491.1 HAVANA gene 13943 15828 . + . FI_gene_label "AC087491.1^ENSG00000214546.4" ; ID "PPP3R1--AC087491.1^AC087491.1^ENSG00000214546.4" ; exon_id "ENSE00001533616.1" ; exon_number 1 ; gene_id "PPP3R1--AC087491.1^AC087491.1^ENSG00000214546.4" ; gene_name "AC087491.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000132690.2" ; havana_transcript "OTTHUMT00000255987.1" ; level 2 ; orig_coord_info "chr17,39619613,39619661,+" ; tag basic ; transcript_id "PPP3R1--AC087491.1^ENST00000398554.1" ; transcript_name "AC087491.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
PPP3R1--AC087491.1 HAVANA RNA 13943 15828 . + . FI_gene_label "AC087491.1^ENSG00000214546.4" ; ID "PPP3R1--AC087491.1^ENST00000398554.1" ; Parent "PPP3R1--AC087491.1^AC087491.1^ENSG00000214546.4" ; exon_id "ENSE00001533616.1" ; exon_number 1 ; gene_id "PPP3R1--AC087491.1^AC087491.1^ENSG00000214546.4" ; gene_name "AC087491.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000132690.2" ; havana_transcript "OTTHUMT00000255987.1" ; level 2 ; orig_coord_info "chr17,39619613,39619661,+" ; tag basic ; transcript_id "PPP3R1--AC087491.1^ENST00000398554.1" ; transcript_name "AC087491.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
RFX5--RFX5-AS1 HAVANA gene 10688 11748 . + . FI_gene_label "RFX5-AS1^ENSG00000237976.1" ; ID "RFX5--RFX5-AS1^RFX5-AS1^ENSG00000237976.1" ; exon_id "ENSE00001618373.1" ; exon_number 1 ; gene_id "RFX5--RFX5-AS1^RFX5-AS1^ENSG00000237976.1" ; gene_name "RFX5-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012496.1" ; havana_transcript "OTTHUMT00000034899.1" ; hgnc_id "HGNC:40503" ; level 2 ; orig_coord_info "chr1,151346967,151347188,+" ; tag basic ; transcript_id "RFX5--RFX5-AS1^ENST00000455503.1" ; transcript_name "RFX5-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
RFX5--RFX5-AS1 HAVANA RNA 10688 11748 . + . FI_gene_label "RFX5-AS1^ENSG00000237976.1" ; ID "RFX5--RFX5-AS1^ENST00000455503.1" ; Parent "RFX5--RFX5-AS1^RFX5-AS1^ENSG00000237976.1" ; exon_id "ENSE00001618373.1" ; exon_number 1 ; gene_id "RFX5--RFX5-AS1^RFX5-AS1^ENSG00000237976.1" ; gene_name "RFX5-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012496.1" ; havana_transcript "OTTHUMT00000034899.1" ; hgnc_id "HGNC:40503" ; level 2 ; orig_coord_info "chr1,151346967,151347188,+" ; tag basic ; transcript_id "RFX5--RFX5-AS1^ENST00000455503.1" ; transcript_name "RFX5-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
RPRD2--AL589986.2 HAVANA gene 23963 25162 . + . FI_gene_label "AL589986.2^ENSG00000236427.1" ; ID "RPRD2--AL589986.2^AL589986.2^ENSG00000236427.1" ; exon_id "ENSE00001784185.1" ; exon_number 1 ; gene_id "RPRD2--AL589986.2^AL589986.2^ENSG00000236427.1" ; gene_name "AL589986.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012244.1" ; havana_transcript "OTTHUMT00000034017.1" ; level 2 ; orig_coord_info "chr1,152205858,152206055,+" ; tag basic ; transcript_id "RPRD2--AL589986.2^ENST00000429352.1" ; transcript_name "AL589986.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
RPRD2--AL589986.2 HAVANA RNA 23963 25162 . + . FI_gene_label "AL589986.2^ENSG00000236427.1" ; ID "RPRD2--AL589986.2^ENST00000429352.1" ; Parent "RPRD2--AL589986.2^AL589986.2^ENSG00000236427.1" ; exon_id "ENSE00001784185.1" ; exon_number 1 ; gene_id "RPRD2--AL589986.2^AL589986.2^ENSG00000236427.1" ; gene_name "AL589986.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012244.1" ; havana_transcript "OTTHUMT00000034017.1" ; level 2 ; orig_coord_info "chr1,152205858,152206055,+" ; tag basic ; transcript_id "RPRD2--AL589986.2^ENST00000429352.1" ; transcript_name "AL589986.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
RPRD2--FLG-AS1 HAVANA gene 26720 30513 . + . FI_gene_label "FLG-AS1^ENSG00000237975.7" ; ID "RPRD2--FLG-AS1^FLG-AS1^ENSG00000237975.7" ; exon_id "ENSE00001805770.1" ; exon_number 1 ; gene_id "RPRD2--FLG-AS1^FLG-AS1^ENSG00000237975.7" ; gene_name "FLG-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012203.6" ; havana_transcript "OTTHUMT00000034014.1" ; hgnc_id "HGNC:27913" ; level 2 ; orig_coord_info "chr1,152249003,152249012,+" ; transcript_id "RPRD2--FLG-AS1^ENST00000382265.3" ; transcript_name "FLG-AS1-201" ; transcript_support_level 5 ; transcript_type lncRNA
RPRD2--FLG-AS1 HAVANA RNA 26720 30513 . + . FI_gene_label "FLG-AS1^ENSG00000237975.7" ; ID "RPRD2--FLG-AS1^ENST00000382265.3" ; Parent "RPRD2--FLG-AS1^FLG-AS1^ENSG00000237975.7" ; exon_id "ENSE00001805770.1" ; exon_number 1 ; gene_id "RPRD2--FLG-AS1^FLG-AS1^ENSG00000237975.7" ; gene_name "FLG-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012203.6" ; havana_transcript "OTTHUMT00000034014.1" ; hgnc_id "HGNC:27913" ; level 2 ; orig_coord_info "chr1,152249003,152249012,+" ; transcript_id "RPRD2--FLG-AS1^ENST00000382265.3" ; transcript_name "FLG-AS1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
SPOPL--AC092620.1 HAVANA gene 18159 19600 . + . FI_gene_label "AC092620.1^ENSG00000241772.2" ; ID "SPOPL--AC092620.1^AC092620.1^ENSG00000241772.2" ; exon_id "ENSE00001599434.1" ; exon_number 1 ; gene_id "SPOPL--AC092620.1^AC092620.1^ENSG00000241772.2" ; gene_name "AC092620.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000153633.2" ; havana_transcript "OTTHUMT00000331895.1" ; level 1 ; orig_coord_info "chr2,138569092,138569226,+" ; tag basic exp_conf ; transcript_id "SPOPL--AC092620.1^ENST00000449869.1" ; transcript_name "AC092620.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
SPOPL--AC092620.1 HAVANA RNA 18159 19600 . + . FI_gene_label "AC092620.1^ENSG00000241772.2" ; ID "SPOPL--AC092620.1^ENST00000449869.1" ; Parent "SPOPL--AC092620.1^AC092620.1^ENSG00000241772.2" ; exon_id "ENSE00001599434.1" ; exon_number 1 ; gene_id "SPOPL--AC092620.1^AC092620.1^ENSG00000241772.2" ; gene_name "AC092620.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000153633.2" ; havana_transcript "OTTHUMT00000331895.1" ; level 1 ; orig_coord_info "chr2,138569092,138569226,+" ; tag basic exp_conf ; transcript_id "SPOPL--AC092620.1^ENST00000449869.1" ; transcript_name "AC092620.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
SPOPL--AC092620.2 HAVANA gene 18157 20920 . + . FI_gene_label "AC092620.2^ENSG00000260059.1" ; ID "SPOPL--AC092620.2^AC092620.2^ENSG00000260059.1" ; exon_id "ENSE00002608781.1" ; exon_number 1 ; gene_id "SPOPL--AC092620.2^AC092620.2^ENSG00000260059.1" ; gene_name "AC092620.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000176215.1" ; havana_transcript "OTTHUMT00000431639.1" ; level 2 ; orig_coord_info "chr2,138599663,138602426,-" ; tag basic ; transcript_id "SPOPL--AC092620.2^ENST00000562796.1" ; transcript_name "AC092620.2-201" ; transcript_support_level NA ; transcript_type lncRNA
SPOPL--AC092620.2 HAVANA RNA 18157 20920 . + . FI_gene_label "AC092620.2^ENSG00000260059.1" ; ID "SPOPL--AC092620.2^ENST00000562796.1" ; Parent "SPOPL--AC092620.2^AC092620.2^ENSG00000260059.1" ; exon_id "ENSE00002608781.1" ; exon_number 1 ; gene_id "SPOPL--AC092620.2^AC092620.2^ENSG00000260059.1" ; gene_name "AC092620.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000176215.1" ; havana_transcript "OTTHUMT00000431639.1" ; level 2 ; orig_coord_info "chr2,138599663,138602426,-" ; tag basic ; transcript_id "SPOPL--AC092620.2^ENST00000562796.1" ; transcript_name "AC092620.2-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
STRN3--AL158058.2 HAVANA gene 25288 33979 . + . FI_gene_label "AL158058.2^ENSG00000286040.1" ; ID "STRN3--AL158058.2^AL158058.2^ENSG00000286040.1" ; exon_id "ENSE00003841211.1" ; exon_number 1 ; gene_id "STRN3--AL158058.2^AL158058.2^ENSG00000286040.1" ; gene_name "AL158058.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193486.1" ; havana_transcript "OTTHUMT00000502123.1" ; level 2 ; orig_coord_info "chr14,29500334,29500460,-" ; tag RNA_Seq_supported_partial basic ; transcript_id "STRN3--AL158058.2^ENST00000652296.1" ; transcript_name "AL158058.2-201" ; transcript_type lncRNA
STRN3--AL158058.2 HAVANA RNA 25288 33979 . + . FI_gene_label "AL158058.2^ENSG00000286040.1" ; ID "STRN3--AL158058.2^ENST00000652296.1" ; Parent "STRN3--AL158058.2^AL158058.2^ENSG00000286040.1" ; exon_id "ENSE00003841211.1" ; exon_number 1 ; gene_id "STRN3--AL158058.2^AL158058.2^ENSG00000286040.1" ; gene_name "AL158058.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193486.1" ; havana_transcript "OTTHUMT00000502123.1" ; level 2 ; orig_coord_info "chr14,29500334,29500460,-" ; tag RNA_Seq_supported_partial basic ; transcript_id "STRN3--AL158058.2^ENST00000652296.1" ; transcript_name "AL158058.2-201" ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TRIM33--AL356277.3 HAVANA gene 30663 37549 . + . FI_gene_label "AL356277.3^ENSG00000272243.6" ; ID "TRIM33--AL356277.3^AL356277.3^ENSG00000272243.6" ; exon_id "ENSE00001637621.1" ; exon_number 1 ; gene_id "TRIM33--AL356277.3^AL356277.3^ENSG00000272243.6" ; gene_name "AL356277.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185194.4" ; havana_transcript "OTTHUMT00000041237.3" ; level 2 ; orig_coord_info "chr6,74734081,74734279,-" ; tag basic ; transcript_id "TRIM33--AL356277.3^ENST00000432484.6" ; transcript_name "AL356277.3-201" ; transcript_support_level 3 ; transcript_type lncRNA
TRIM33--AL356277.3 HAVANA RNA 30663 37549 . + . FI_gene_label "AL356277.3^ENSG00000272243.6" ; ID "TRIM33--AL356277.3^ENST00000432484.6" ; Parent "TRIM33--AL356277.3^AL356277.3^ENSG00000272243.6" ; exon_id "ENSE00001637621.1" ; exon_number 1 ; gene_id "TRIM33--AL356277.3^AL356277.3^ENSG00000272243.6" ; gene_name "AL356277.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185194.4" ; havana_transcript "OTTHUMT00000041237.3" ; level 2 ; orig_coord_info "chr6,74734081,74734279,-" ; tag basic ; transcript_id "TRIM33--AL356277.3^ENST00000432484.6" ; transcript_name "AL356277.3-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
TRIM33--AL356473.1 HAVANA gene 30623 32030 . + . FI_gene_label "AL356473.1^ENSG00000219736.1" ; ID "TRIM33--AL356473.1^AL356473.1^ENSG00000219736.1" ; exon_id "ENSE00001558205.1" ; exon_number 1 ; gene_id "TRIM33--AL356473.1^AL356473.1^ENSG00000219736.1" ; gene_name "AL356473.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000015047.1" ; havana_transcript "OTTHUMT00000041239.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr6,74849077,74850484,-" ; tag pseudo_consens basic ; transcript_id "TRIM33--AL356473.1^ENST00000406203.1" ; transcript_name "AL356473.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TRIM33--AL356473.1 HAVANA RNA 30623 32030 . + . FI_gene_label "AL356473.1^ENSG00000219736.1" ; ID "TRIM33--AL356473.1^ENST00000406203.1" ; Parent "TRIM33--AL356473.1^AL356473.1^ENSG00000219736.1" ; exon_id "ENSE00001558205.1" ; exon_number 1 ; gene_id "TRIM33--AL356473.1^AL356473.1^ENSG00000219736.1" ; gene_name "AL356473.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000015047.1" ; havana_transcript "OTTHUMT00000041239.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr6,74849077,74850484,-" ; tag pseudo_consens basic ; transcript_id "TRIM33--AL356473.1^ENST00000406203.1" ; transcript_name "AL356473.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
2161 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 1 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
4060 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 147 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed