Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/0ef6085401c408351c1882d0382bb2/aih-tih-sc-8e3550-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/7eedeb09843bf3a4e37251567446b0/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/7eedeb09843bf3a4e37251567446b0/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/3f9fa78e3241707c088187cbd66c75/aih-tih-sc-8e3550-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
ZFP3--TM4SF5
starfusion
arriba
WT1--AC006504.5
starfusion
arriba
GSK3A--CIC
starfusion
arriba
QKI--AL449043.2
starfusion
arriba
AGO2--TRAPPC9
starfusion
arriba
PTK2--AGO2
starfusion
arriba
UXS1--NHEJ1
starfusion
arriba
FBXL20--PAMR1
starfusion
arriba
TBC1D8--AGFG1
starfusion
arriba
BRD4--NOTCH3
starfusion
NEK8--EPHA6
starfusion
arriba
INTS9--DLGAP2
starfusion
arriba
DIAPH1--PCDH1
starfusion
arriba
SCARB1--DHX37
starfusion
arriba
IGF1R--TRIM37
starfusion
arriba
CNPPD1--GAPDHP49
starfusion
arriba
TERF1--KCNB2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
INTS2--BCAS3
starfusion
arriba
RFC1--WDR19
starfusion
arriba
AC242842.2--KCNN3
starfusion
VMP1--PINX1
starfusion
arriba
VPS72--AC137761.1
starfusion
RRM2B--UBR5
starfusion
TLK2--AC240565.1
starfusion
MARK2--AC019211.1
starfusion
arriba
ING5--FP236383.3
starfusion
KLF15--ALG1L2
starfusion
arriba
PTPRF--AC099671.1
starfusion
arriba
AC026412.1--SDHAP1
starfusion
ACACA--ETV2
starfusion
BCAS3--CASC17
starfusion
AC084809.1--SELENBP1
starfusion
INPPL1--GHSR
arriba
INPPL1--TNFSF10
arriba
PARG--BMS1
arriba
QKI--WASHC1
arriba
ELK1--SYN1
arriba
PCDHA11--PCDHA13
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
WT1--AC006504.2
arriba
INTS10--AC018541.1
arriba
FBXL20--SH3RF3
arriba
PHF21A--KIT
arriba
XPO1--USP34
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
SRP68--ZMAT3
arriba
NEK6--AC092958.4
arriba
PIGS--SPAG5
arriba
USP37--AC008281.1
arriba
USP37--AC009310.1
arriba
AC015911.9--SLFN12L
arriba
NF1--AL353742.1
arriba
NF1--AL669983.1
arriba
MAD1L1--SDK1
arriba
PSMD14--AC005040.2
arriba
PSMD14--LINC01789
arriba
TVP23C--CDRT4
arriba
CERCAM--VDAC3
arriba
CERCAM--SLC20A2
arriba
WT1--AC005357.2
arriba
ZNF528--ZNF610
arriba
ZNF528--ZNF880
arriba
LINC00937--AC083906.5
arriba
LINC00937--AC083906.2
arriba
SDHA--PLEKHG4B
arriba
AC092807.3--DDAH1
arriba
C1orf112--F5
arriba
RSRC1--IL12A-AS1
arriba
TRIM37--AC022523.1
arriba
WASH8P--WASH8P
arriba
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Processing ZFP3--TM4SF5: 0%| | 0/74 [00:00<?, ?it/s]
Processing ZFP3--TM4SF5: 1%|▏ | 1/74 [00:00<00:08, 8.26it/s]
Processing WT1--AC006504.5: 1%|▏ | 1/74 [00:00<00:08, 8.26it/s]
Processing WT1--AC006504.5: 3%|▎ | 2/74 [00:00<00:08, 8.78it/s]
Processing GSK3A--CIC: 3%|▎ | 2/74 [00:00<00:08, 8.78it/s]
Processing GSK3A--CIC: 4%|▍ | 3/74 [00:00<00:07, 8.95it/s]
Processing QKI--AL449043.2: 4%|▍ | 3/74 [00:00<00:07, 8.95it/s]
Processing QKI--AL449043.2: 5%|▌ | 4/74 [00:00<00:07, 9.04it/s]
Processing AGO2--TRAPPC9: 5%|▌ | 4/74 [00:00<00:07, 9.04it/s]
Processing AGO2--TRAPPC9: 7%|▋ | 5/74 [00:00<00:07, 9.09it/s]
Processing PTK2--AGO2: 7%|▋ | 5/74 [00:00<00:07, 9.09it/s]
Processing PTK2--AGO2: 8%|▊ | 6/74 [00:00<00:07, 9.12it/s]
Processing UXS1--NHEJ1: 8%|▊ | 6/74 [00:00<00:07, 9.12it/s]
Processing UXS1--NHEJ1: 9%|▉ | 7/74 [00:00<00:07, 9.14it/s]
Processing FBXL20--PAMR1: 9%|▉ | 7/74 [00:00<00:07, 9.14it/s]
Processing FBXL20--PAMR1: 11%|█ | 8/74 [00:00<00:07, 9.15it/s]
Processing TBC1D8--AGFG1: 11%|█ | 8/74 [00:00<00:07, 9.15it/s]
Processing TBC1D8--AGFG1: 12%|█▏ | 9/74 [00:00<00:07, 9.16it/s]
Processing BRD4--NOTCH3: 12%|█▏ | 9/74 [00:01<00:07, 9.16it/s]
Processing BRD4--NOTCH3: 14%|█▎ | 10/74 [00:01<00:06, 9.17it/s]
Processing NEK8--EPHA6: 14%|█▎ | 10/74 [00:01<00:06, 9.17it/s]
Processing NEK8--EPHA6: 15%|█▍ | 11/74 [00:01<00:06, 9.17it/s]
Processing INTS9--DLGAP2: 15%|█▍ | 11/74 [00:01<00:06, 9.17it/s]
Processing INTS9--DLGAP2: 16%|█▌ | 12/74 [00:01<00:06, 9.17it/s]
Processing DIAPH1--PCDH1: 16%|█▌ | 12/74 [00:01<00:06, 9.17it/s]
Processing DIAPH1--PCDH1: 18%|█▊ | 13/74 [00:01<00:06, 9.17it/s]
Processing SCARB1--DHX37: 18%|█▊ | 13/74 [00:01<00:06, 9.17it/s]
Processing SCARB1--DHX37: 19%|█▉ | 14/74 [00:01<00:06, 9.18it/s]
Processing IGF1R--TRIM37: 19%|█▉ | 14/74 [00:01<00:06, 9.18it/s]
Processing IGF1R--TRIM37: 20%|██ | 15/74 [00:01<00:06, 9.17it/s]
Processing CNPPD1--GAPDHP49: 20%|██ | 15/74 [00:01<00:06, 9.17it/s]
Processing CNPPD1--GAPDHP49: 22%|██▏ | 16/74 [00:01<00:06, 9.17it/s]
Processing TERF1--KCNB2: 22%|██▏ | 16/74 [00:01<00:06, 9.17it/s]
Processing TERF1--KCNB2: 23%|██▎ | 17/74 [00:01<00:06, 9.18it/s]
Processing TLK2P1--AC110079.1: 23%|██▎ | 17/74 [00:01<00:06, 9.18it/s]
Processing TLK2P1--AC110079.1: 24%|██▍ | 18/74 [00:01<00:06, 9.18it/s]
Processing INTS2--BCAS3: 24%|██▍ | 18/74 [00:01<00:06, 9.18it/s]
Processing INTS2--BCAS3: 26%|██▌ | 19/74 [00:02<00:05, 9.18it/s]
Processing RFC1--WDR19: 26%|██▌ | 19/74 [00:02<00:05, 9.18it/s]
Processing RFC1--WDR19: 27%|██▋ | 20/74 [00:02<00:05, 9.17it/s]
Processing AC242842.2--KCNN3: 27%|██▋ | 20/74 [00:02<00:05, 9.17it/s]
Processing AC242842.2--KCNN3: 28%|██▊ | 21/74 [00:02<00:05, 9.18it/s]
Processing VMP1--PINX1: 28%|██▊ | 21/74 [00:02<00:05, 9.18it/s]
Processing VMP1--PINX1: 30%|██▉ | 22/74 [00:02<00:05, 9.17it/s]
Processing VPS72--AC137761.1: 30%|██▉ | 22/74 [00:02<00:05, 9.17it/s]
Processing VPS72--AC137761.1: 31%|███ | 23/74 [00:02<00:05, 9.17it/s]
Processing RRM2B--UBR5: 31%|███ | 23/74 [00:02<00:05, 9.17it/s]
Processing RRM2B--UBR5: 32%|███▏ | 24/74 [00:02<00:05, 9.17it/s]
Processing TLK2--AC240565.1: 32%|███▏ | 24/74 [00:02<00:05, 9.17it/s]
Processing TLK2--AC240565.1: 34%|███▍ | 25/74 [00:02<00:05, 9.18it/s]
Processing MARK2--AC019211.1: 34%|███▍ | 25/74 [00:02<00:05, 9.18it/s]
Processing MARK2--AC019211.1: 35%|███▌ | 26/74 [00:02<00:05, 9.18it/s]
Processing ING5--FP236383.3: 35%|███▌ | 26/74 [00:02<00:05, 9.18it/s]
Processing ING5--FP236383.3: 36%|███▋ | 27/74 [00:02<00:05, 9.17it/s]
Processing KLF15--ALG1L2: 36%|███▋ | 27/74 [00:02<00:05, 9.17it/s]
Processing KLF15--ALG1L2: 38%|███▊ | 28/74 [00:03<00:05, 9.17it/s]
Processing PTPRF--AC099671.1: 38%|███▊ | 28/74 [00:03<00:05, 9.17it/s]
Processing PTPRF--AC099671.1: 39%|███▉ | 29/74 [00:03<00:04, 9.18it/s]
Processing AC026412.1--SDHAP1: 39%|███▉ | 29/74 [00:03<00:04, 9.18it/s]
Processing AC026412.1--SDHAP1: 41%|████ | 30/74 [00:03<00:04, 9.18it/s]
Processing ACACA--ETV2: 41%|████ | 30/74 [00:03<00:04, 9.18it/s]
Processing ACACA--ETV2: 42%|████▏ | 31/74 [00:03<00:04, 9.18it/s]
Processing BCAS3--CASC17: 42%|████▏ | 31/74 [00:03<00:04, 9.18it/s]
Processing BCAS3--CASC17: 43%|████▎ | 32/74 [00:03<00:04, 9.19it/s]
Processing AC084809.1--SELENBP1: 43%|████▎ | 32/74 [00:03<00:04, 9.19it/s]
Processing AC084809.1--SELENBP1: 45%|████▍ | 33/74 [00:03<00:04, 9.19it/s]
Processing INPPL1--GHSR: 45%|████▍ | 33/74 [00:03<00:04, 9.19it/s]
Processing INPPL1--GHSR: 46%|████▌ | 34/74 [00:03<00:04, 9.18it/s]
Processing INPPL1--TNFSF10: 46%|████▌ | 34/74 [00:03<00:04, 9.18it/s]
Processing INPPL1--TNFSF10: 47%|████▋ | 35/74 [00:03<00:04, 9.18it/s]
Processing PARG--BMS1: 47%|████▋ | 35/74 [00:03<00:04, 9.18it/s]
Processing PARG--BMS1: 49%|████▊ | 36/74 [00:03<00:04, 9.18it/s]
Processing QKI--WASHC1: 49%|████▊ | 36/74 [00:03<00:04, 9.18it/s]
Processing QKI--WASHC1: 50%|█████ | 37/74 [00:04<00:04, 9.18it/s]
Processing ELK1--SYN1: 50%|█████ | 37/74 [00:04<00:04, 9.18it/s]
Processing ELK1--SYN1: 51%|█████▏ | 38/74 [00:04<00:03, 9.19it/s]
Processing PCDHA11--PCDHA13: 51%|█████▏ | 38/74 [00:04<00:03, 9.19it/s]
Processing PCDHA11--PCDHA13: 53%|█████▎ | 39/74 [00:04<00:03, 9.19it/s]
Processing PCDHA11--PCDHAC1: 53%|█████▎ | 39/74 [00:04<00:03, 9.19it/s]
Processing PCDHA11--PCDHAC1: 54%|█████▍ | 40/74 [00:04<00:03, 9.19it/s]
Processing PCDHA11--PCDHAC2: 54%|█████▍ | 40/74 [00:04<00:03, 9.19it/s]
Processing PCDHA11--PCDHAC2: 55%|█████▌ | 41/74 [00:04<00:03, 9.19it/s]
Processing WT1--AC006504.2: 55%|█████▌ | 41/74 [00:04<00:03, 9.19it/s]
Processing WT1--AC006504.2: 57%|█████▋ | 42/74 [00:04<00:03, 9.18it/s]
Processing INTS10--AC018541.1: 57%|█████▋ | 42/74 [00:04<00:03, 9.18it/s]
Processing INTS10--AC018541.1: 58%|█████▊ | 43/74 [00:04<00:03, 9.18it/s]
Processing FBXL20--SH3RF3: 58%|█████▊ | 43/74 [00:04<00:03, 9.18it/s]
Processing FBXL20--SH3RF3: 59%|█████▉ | 44/74 [00:04<00:03, 9.19it/s]
Processing PHF21A--KIT: 59%|█████▉ | 44/74 [00:04<00:03, 9.19it/s]
Processing PHF21A--KIT: 61%|██████ | 45/74 [00:04<00:03, 9.19it/s]
Processing XPO1--USP34: 61%|██████ | 45/74 [00:04<00:03, 9.19it/s]
Processing XPO1--USP34: 62%|██████▏ | 46/74 [00:05<00:03, 9.19it/s]
Processing PCDHA4--PCDHAC2: 62%|██████▏ | 46/74 [00:05<00:03, 9.19it/s]
Processing PCDHA4--PCDHAC2: 64%|██████▎ | 47/74 [00:05<00:02, 9.19it/s]
Processing PCDHA4--PCDHAC1: 64%|██████▎ | 47/74 [00:05<00:02, 9.19it/s]
Processing PCDHA4--PCDHAC1: 65%|██████▍ | 48/74 [00:05<00:02, 9.19it/s]
Processing PCDHA4--PCDHA13: 65%|██████▍ | 48/74 [00:05<00:02, 9.19it/s]
Processing PCDHA4--PCDHA13: 66%|██████▌ | 49/74 [00:05<00:02, 9.14it/s]
Processing SRP68--ZMAT3: 66%|██████▌ | 49/74 [00:05<00:02, 9.14it/s]
Processing SRP68--ZMAT3: 68%|██████▊ | 50/74 [00:05<00:02, 9.13it/s]
Processing NEK6--AC092958.4: 68%|██████▊ | 50/74 [00:05<00:02, 9.13it/s]
Processing NEK6--AC092958.4: 69%|██████▉ | 51/74 [00:05<00:02, 9.15it/s]
Processing PIGS--SPAG5: 69%|██████▉ | 51/74 [00:05<00:02, 9.15it/s]
Processing PIGS--SPAG5: 70%|███████ | 52/74 [00:05<00:02, 9.16it/s]
Processing USP37--AC008281.1: 70%|███████ | 52/74 [00:05<00:02, 9.16it/s]
Processing USP37--AC008281.1: 72%|███████▏ | 53/74 [00:05<00:02, 9.16it/s]
Processing USP37--AC009310.1: 72%|███████▏ | 53/74 [00:05<00:02, 9.16it/s]
Processing USP37--AC009310.1: 73%|███████▎ | 54/74 [00:05<00:02, 9.17it/s]
Processing AC015911.9--SLFN12L: 73%|███████▎ | 54/74 [00:05<00:02, 9.17it/s]
Processing AC015911.9--SLFN12L: 74%|███████▍ | 55/74 [00:06<00:02, 9.17it/s]
Processing NF1--AL353742.1: 74%|███████▍ | 55/74 [00:06<00:02, 9.17it/s]
Processing NF1--AL353742.1: 76%|███████▌ | 56/74 [00:06<00:01, 9.18it/s]
Processing NF1--AL669983.1: 76%|███████▌ | 56/74 [00:06<00:01, 9.18it/s]
Processing NF1--AL669983.1: 77%|███████▋ | 57/74 [00:06<00:01, 9.18it/s]
Processing MAD1L1--SDK1: 77%|███████▋ | 57/74 [00:06<00:01, 9.18it/s]
Processing MAD1L1--SDK1: 78%|███████▊ | 58/74 [00:06<00:01, 9.19it/s]
Processing PSMD14--AC005040.2: 78%|███████▊ | 58/74 [00:06<00:01, 9.19it/s]
Processing PSMD14--AC005040.2: 80%|███████▉ | 59/74 [00:06<00:01, 9.19it/s]
Processing PSMD14--LINC01789: 80%|███████▉ | 59/74 [00:06<00:01, 9.19it/s]
Processing PSMD14--LINC01789: 81%|████████ | 60/74 [00:06<00:01, 9.19it/s]
Processing TVP23C--CDRT4: 81%|████████ | 60/74 [00:06<00:01, 9.19it/s]
Processing TVP23C--CDRT4: 82%|████████▏ | 61/74 [00:06<00:01, 9.19it/s]
Processing CERCAM--VDAC3: 82%|████████▏ | 61/74 [00:06<00:01, 9.19it/s]
Processing CERCAM--VDAC3: 84%|████████▍ | 62/74 [00:06<00:01, 9.19it/s]
Processing CERCAM--SLC20A2: 84%|████████▍ | 62/74 [00:06<00:01, 9.19it/s]
Processing CERCAM--SLC20A2: 85%|████████▌ | 63/74 [00:06<00:01, 9.19it/s]
Processing WT1--AC005357.2: 85%|████████▌ | 63/74 [00:06<00:01, 9.19it/s]
Processing WT1--AC005357.2: 86%|████████▋ | 64/74 [00:06<00:01, 9.19it/s]
Processing ZNF528--ZNF610: 86%|████████▋ | 64/74 [00:06<00:01, 9.19it/s]
Processing ZNF528--ZNF610: 88%|████████▊ | 65/74 [00:07<00:00, 9.19it/s]
Processing ZNF528--ZNF880: 88%|████████▊ | 65/74 [00:07<00:00, 9.19it/s]
Processing ZNF528--ZNF880: 89%|████████▉ | 66/74 [00:07<00:00, 9.19it/s]
Processing LINC00937--AC083906.5: 89%|████████▉ | 66/74 [00:07<00:00, 9.19it/s]
Processing LINC00937--AC083906.5: 91%|█████████ | 67/74 [00:07<00:00, 9.19it/s]
Processing LINC00937--AC083906.2: 91%|█████████ | 67/74 [00:07<00:00, 9.19it/s]
Processing LINC00937--AC083906.2: 92%|█████████▏| 68/74 [00:07<00:00, 9.19it/s]
Processing SDHA--PLEKHG4B: 92%|█████████▏| 68/74 [00:07<00:00, 9.19it/s]
Processing SDHA--PLEKHG4B: 93%|█████████▎| 69/74 [00:07<00:00, 9.19it/s]
Processing AC092807.3--DDAH1: 93%|█████████▎| 69/74 [00:07<00:00, 9.19it/s]
Processing AC092807.3--DDAH1: 95%|█████████▍| 70/74 [00:07<00:00, 9.19it/s]
Processing C1orf112--F5: 95%|█████████▍| 70/74 [00:07<00:00, 9.19it/s]
Processing C1orf112--F5: 96%|█████████▌| 71/74 [00:07<00:00, 9.19it/s]
Processing RSRC1--IL12A-AS1: 96%|█████████▌| 71/74 [00:07<00:00, 9.19it/s]
Processing RSRC1--IL12A-AS1: 97%|█████████▋| 72/74 [00:07<00:00, 9.19it/s]
Processing TRIM37--AC022523.1: 97%|█████████▋| 72/74 [00:07<00:00, 9.19it/s]
Processing TRIM37--AC022523.1: 99%|█████████▊| 73/74 [00:07<00:00, 9.20it/s]
Processing WASH8P--WASH8P: 99%|█████████▊| 73/74 [00:07<00:00, 9.20it/s]
Processing WASH8P--WASH8P: 100%|██████████| 74/74 [00:08<00:00, 9.19it/s]
Processing WASH8P--WASH8P: 100%|██████████| 74/74 [00:08<00:00, 9.17it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory