Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/0ef6085401c408351c1882d0382bb2/aih-tih-sc-8e3550-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/7eedeb09843bf3a4e37251567446b0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/7eedeb09843bf3a4e37251567446b0/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/3f9fa78e3241707c088187cbd66c75/aih-tih-sc-8e3550-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
ZFP3--TM4SF5
starfusion
arriba
WT1--AC006504.5
starfusion
arriba
GSK3A--CIC
starfusion
arriba
QKI--AL449043.2
starfusion
arriba
AGO2--TRAPPC9
starfusion
arriba
PTK2--AGO2
starfusion
arriba
UXS1--NHEJ1
starfusion
arriba
FBXL20--PAMR1
starfusion
arriba
TBC1D8--AGFG1
starfusion
arriba
BRD4--NOTCH3
starfusion
NEK8--EPHA6
starfusion
arriba
INTS9--DLGAP2
starfusion
arriba
DIAPH1--PCDH1
starfusion
arriba
SCARB1--DHX37
starfusion
arriba
IGF1R--TRIM37
starfusion
arriba
CNPPD1--GAPDHP49
starfusion
arriba
TERF1--KCNB2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
INTS2--BCAS3
starfusion
arriba
RFC1--WDR19
starfusion
arriba
AC242842.2--KCNN3
starfusion
VMP1--PINX1
starfusion
arriba
VPS72--AC137761.1
starfusion
RRM2B--UBR5
starfusion
TLK2--AC240565.1
starfusion
MARK2--AC019211.1
starfusion
arriba
ING5--FP236383.3
starfusion
KLF15--ALG1L2
starfusion
arriba
PTPRF--AC099671.1
starfusion
arriba
AC026412.1--SDHAP1
starfusion
ACACA--ETV2
starfusion
BCAS3--CASC17
starfusion
AC084809.1--SELENBP1
starfusion
INPPL1--GHSR
arriba
INPPL1--TNFSF10
arriba
PARG--BMS1
arriba
QKI--WASHC1
arriba
ELK1--SYN1
arriba
PCDHA11--PCDHA13
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
WT1--AC006504.2
arriba
INTS10--AC018541.1
arriba
FBXL20--SH3RF3
arriba
PHF21A--KIT
arriba
XPO1--USP34
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
SRP68--ZMAT3
arriba
NEK6--AC092958.4
arriba
PIGS--SPAG5
arriba
USP37--AC008281.1
arriba
USP37--AC009310.1
arriba
AC015911.9--SLFN12L
arriba
NF1--AL353742.1
arriba
NF1--AL669983.1
arriba
MAD1L1--SDK1
arriba
PSMD14--AC005040.2
arriba
PSMD14--LINC01789
arriba
TVP23C--CDRT4
arriba
CERCAM--VDAC3
arriba
CERCAM--SLC20A2
arriba
WT1--AC005357.2
arriba
ZNF528--ZNF610
arriba
ZNF528--ZNF880
arriba
LINC00937--AC083906.5
arriba
LINC00937--AC083906.2
arriba
SDHA--PLEKHG4B
arriba
AC092807.3--DDAH1
arriba
C1orf112--F5
arriba
RSRC1--IL12A-AS1
arriba
TRIM37--AC022523.1
arriba
WASH8P--WASH8P
arriba

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Processing ZFP3--TM4SF5:   0%|          | 0/74 [00:00<?, ?it/s]
Processing ZFP3--TM4SF5:   1%|▏         | 1/74 [00:00<00:08,  8.26it/s]
Processing WT1--AC006504.5:   1%|▏         | 1/74 [00:00<00:08,  8.26it/s]
Processing WT1--AC006504.5:   3%|▎         | 2/74 [00:00<00:08,  8.78it/s]
Processing GSK3A--CIC:   3%|▎         | 2/74 [00:00<00:08,  8.78it/s]     
Processing GSK3A--CIC:   4%|▍         | 3/74 [00:00<00:07,  8.95it/s]
Processing QKI--AL449043.2:   4%|▍         | 3/74 [00:00<00:07,  8.95it/s]
Processing QKI--AL449043.2:   5%|▌         | 4/74 [00:00<00:07,  9.04it/s]
Processing AGO2--TRAPPC9:   5%|▌         | 4/74 [00:00<00:07,  9.04it/s]  
Processing AGO2--TRAPPC9:   7%|▋         | 5/74 [00:00<00:07,  9.09it/s]
Processing PTK2--AGO2:   7%|▋         | 5/74 [00:00<00:07,  9.09it/s]   
Processing PTK2--AGO2:   8%|▊         | 6/74 [00:00<00:07,  9.12it/s]
Processing UXS1--NHEJ1:   8%|▊         | 6/74 [00:00<00:07,  9.12it/s]
Processing UXS1--NHEJ1:   9%|▉         | 7/74 [00:00<00:07,  9.14it/s]
Processing FBXL20--PAMR1:   9%|▉         | 7/74 [00:00<00:07,  9.14it/s]
Processing FBXL20--PAMR1:  11%|█         | 8/74 [00:00<00:07,  9.15it/s]
Processing TBC1D8--AGFG1:  11%|█         | 8/74 [00:00<00:07,  9.15it/s]
Processing TBC1D8--AGFG1:  12%|█▏        | 9/74 [00:00<00:07,  9.16it/s]
Processing BRD4--NOTCH3:  12%|█▏        | 9/74 [00:01<00:07,  9.16it/s] 
Processing BRD4--NOTCH3:  14%|█▎        | 10/74 [00:01<00:06,  9.17it/s]
Processing NEK8--EPHA6:  14%|█▎        | 10/74 [00:01<00:06,  9.17it/s] 
Processing NEK8--EPHA6:  15%|█▍        | 11/74 [00:01<00:06,  9.17it/s]
Processing INTS9--DLGAP2:  15%|█▍        | 11/74 [00:01<00:06,  9.17it/s]
Processing INTS9--DLGAP2:  16%|█▌        | 12/74 [00:01<00:06,  9.17it/s]
Processing DIAPH1--PCDH1:  16%|█▌        | 12/74 [00:01<00:06,  9.17it/s]
Processing DIAPH1--PCDH1:  18%|█▊        | 13/74 [00:01<00:06,  9.17it/s]
Processing SCARB1--DHX37:  18%|█▊        | 13/74 [00:01<00:06,  9.17it/s]
Processing SCARB1--DHX37:  19%|█▉        | 14/74 [00:01<00:06,  9.18it/s]
Processing IGF1R--TRIM37:  19%|█▉        | 14/74 [00:01<00:06,  9.18it/s]
Processing IGF1R--TRIM37:  20%|██        | 15/74 [00:01<00:06,  9.17it/s]
Processing CNPPD1--GAPDHP49:  20%|██        | 15/74 [00:01<00:06,  9.17it/s]
Processing CNPPD1--GAPDHP49:  22%|██▏       | 16/74 [00:01<00:06,  9.17it/s]
Processing TERF1--KCNB2:  22%|██▏       | 16/74 [00:01<00:06,  9.17it/s]    
Processing TERF1--KCNB2:  23%|██▎       | 17/74 [00:01<00:06,  9.18it/s]
Processing TLK2P1--AC110079.1:  23%|██▎       | 17/74 [00:01<00:06,  9.18it/s]
Processing TLK2P1--AC110079.1:  24%|██▍       | 18/74 [00:01<00:06,  9.18it/s]
Processing INTS2--BCAS3:  24%|██▍       | 18/74 [00:01<00:06,  9.18it/s]      
Processing INTS2--BCAS3:  26%|██▌       | 19/74 [00:02<00:05,  9.18it/s]
Processing RFC1--WDR19:  26%|██▌       | 19/74 [00:02<00:05,  9.18it/s] 
Processing RFC1--WDR19:  27%|██▋       | 20/74 [00:02<00:05,  9.17it/s]
Processing AC242842.2--KCNN3:  27%|██▋       | 20/74 [00:02<00:05,  9.17it/s]
Processing AC242842.2--KCNN3:  28%|██▊       | 21/74 [00:02<00:05,  9.18it/s]
Processing VMP1--PINX1:  28%|██▊       | 21/74 [00:02<00:05,  9.18it/s]      
Processing VMP1--PINX1:  30%|██▉       | 22/74 [00:02<00:05,  9.17it/s]
Processing VPS72--AC137761.1:  30%|██▉       | 22/74 [00:02<00:05,  9.17it/s]
Processing VPS72--AC137761.1:  31%|███       | 23/74 [00:02<00:05,  9.17it/s]
Processing RRM2B--UBR5:  31%|███       | 23/74 [00:02<00:05,  9.17it/s]      
Processing RRM2B--UBR5:  32%|███▏      | 24/74 [00:02<00:05,  9.17it/s]
Processing TLK2--AC240565.1:  32%|███▏      | 24/74 [00:02<00:05,  9.17it/s]
Processing TLK2--AC240565.1:  34%|███▍      | 25/74 [00:02<00:05,  9.18it/s]
Processing MARK2--AC019211.1:  34%|███▍      | 25/74 [00:02<00:05,  9.18it/s]
Processing MARK2--AC019211.1:  35%|███▌      | 26/74 [00:02<00:05,  9.18it/s]
Processing ING5--FP236383.3:  35%|███▌      | 26/74 [00:02<00:05,  9.18it/s] 
Processing ING5--FP236383.3:  36%|███▋      | 27/74 [00:02<00:05,  9.17it/s]
Processing KLF15--ALG1L2:  36%|███▋      | 27/74 [00:02<00:05,  9.17it/s]   
Processing KLF15--ALG1L2:  38%|███▊      | 28/74 [00:03<00:05,  9.17it/s]
Processing PTPRF--AC099671.1:  38%|███▊      | 28/74 [00:03<00:05,  9.17it/s]
Processing PTPRF--AC099671.1:  39%|███▉      | 29/74 [00:03<00:04,  9.18it/s]
Processing AC026412.1--SDHAP1:  39%|███▉      | 29/74 [00:03<00:04,  9.18it/s]
Processing AC026412.1--SDHAP1:  41%|████      | 30/74 [00:03<00:04,  9.18it/s]
Processing ACACA--ETV2:  41%|████      | 30/74 [00:03<00:04,  9.18it/s]       
Processing ACACA--ETV2:  42%|████▏     | 31/74 [00:03<00:04,  9.18it/s]
Processing BCAS3--CASC17:  42%|████▏     | 31/74 [00:03<00:04,  9.18it/s]
Processing BCAS3--CASC17:  43%|████▎     | 32/74 [00:03<00:04,  9.19it/s]
Processing AC084809.1--SELENBP1:  43%|████▎     | 32/74 [00:03<00:04,  9.19it/s]
Processing AC084809.1--SELENBP1:  45%|████▍     | 33/74 [00:03<00:04,  9.19it/s]
Processing INPPL1--GHSR:  45%|████▍     | 33/74 [00:03<00:04,  9.19it/s]        
Processing INPPL1--GHSR:  46%|████▌     | 34/74 [00:03<00:04,  9.18it/s]
Processing INPPL1--TNFSF10:  46%|████▌     | 34/74 [00:03<00:04,  9.18it/s]
Processing INPPL1--TNFSF10:  47%|████▋     | 35/74 [00:03<00:04,  9.18it/s]
Processing PARG--BMS1:  47%|████▋     | 35/74 [00:03<00:04,  9.18it/s]     
Processing PARG--BMS1:  49%|████▊     | 36/74 [00:03<00:04,  9.18it/s]
Processing QKI--WASHC1:  49%|████▊     | 36/74 [00:03<00:04,  9.18it/s]
Processing QKI--WASHC1:  50%|█████     | 37/74 [00:04<00:04,  9.18it/s]
Processing ELK1--SYN1:  50%|█████     | 37/74 [00:04<00:04,  9.18it/s] 
Processing ELK1--SYN1:  51%|█████▏    | 38/74 [00:04<00:03,  9.19it/s]
Processing PCDHA11--PCDHA13:  51%|█████▏    | 38/74 [00:04<00:03,  9.19it/s]
Processing PCDHA11--PCDHA13:  53%|█████▎    | 39/74 [00:04<00:03,  9.19it/s]
Processing PCDHA11--PCDHAC1:  53%|█████▎    | 39/74 [00:04<00:03,  9.19it/s]
Processing PCDHA11--PCDHAC1:  54%|█████▍    | 40/74 [00:04<00:03,  9.19it/s]
Processing PCDHA11--PCDHAC2:  54%|█████▍    | 40/74 [00:04<00:03,  9.19it/s]
Processing PCDHA11--PCDHAC2:  55%|█████▌    | 41/74 [00:04<00:03,  9.19it/s]
Processing WT1--AC006504.2:  55%|█████▌    | 41/74 [00:04<00:03,  9.19it/s] 
Processing WT1--AC006504.2:  57%|█████▋    | 42/74 [00:04<00:03,  9.18it/s]
Processing INTS10--AC018541.1:  57%|█████▋    | 42/74 [00:04<00:03,  9.18it/s]
Processing INTS10--AC018541.1:  58%|█████▊    | 43/74 [00:04<00:03,  9.18it/s]
Processing FBXL20--SH3RF3:  58%|█████▊    | 43/74 [00:04<00:03,  9.18it/s]    
Processing FBXL20--SH3RF3:  59%|█████▉    | 44/74 [00:04<00:03,  9.19it/s]
Processing PHF21A--KIT:  59%|█████▉    | 44/74 [00:04<00:03,  9.19it/s]   
Processing PHF21A--KIT:  61%|██████    | 45/74 [00:04<00:03,  9.19it/s]
Processing XPO1--USP34:  61%|██████    | 45/74 [00:04<00:03,  9.19it/s]
Processing XPO1--USP34:  62%|██████▏   | 46/74 [00:05<00:03,  9.19it/s]
Processing PCDHA4--PCDHAC2:  62%|██████▏   | 46/74 [00:05<00:03,  9.19it/s]
Processing PCDHA4--PCDHAC2:  64%|██████▎   | 47/74 [00:05<00:02,  9.19it/s]
Processing PCDHA4--PCDHAC1:  64%|██████▎   | 47/74 [00:05<00:02,  9.19it/s]
Processing PCDHA4--PCDHAC1:  65%|██████▍   | 48/74 [00:05<00:02,  9.19it/s]
Processing PCDHA4--PCDHA13:  65%|██████▍   | 48/74 [00:05<00:02,  9.19it/s]
Processing PCDHA4--PCDHA13:  66%|██████▌   | 49/74 [00:05<00:02,  9.14it/s]
Processing SRP68--ZMAT3:  66%|██████▌   | 49/74 [00:05<00:02,  9.14it/s]   
Processing SRP68--ZMAT3:  68%|██████▊   | 50/74 [00:05<00:02,  9.13it/s]
Processing NEK6--AC092958.4:  68%|██████▊   | 50/74 [00:05<00:02,  9.13it/s]
Processing NEK6--AC092958.4:  69%|██████▉   | 51/74 [00:05<00:02,  9.15it/s]
Processing PIGS--SPAG5:  69%|██████▉   | 51/74 [00:05<00:02,  9.15it/s]     
Processing PIGS--SPAG5:  70%|███████   | 52/74 [00:05<00:02,  9.16it/s]
Processing USP37--AC008281.1:  70%|███████   | 52/74 [00:05<00:02,  9.16it/s]
Processing USP37--AC008281.1:  72%|███████▏  | 53/74 [00:05<00:02,  9.16it/s]
Processing USP37--AC009310.1:  72%|███████▏  | 53/74 [00:05<00:02,  9.16it/s]
Processing USP37--AC009310.1:  73%|███████▎  | 54/74 [00:05<00:02,  9.17it/s]
Processing AC015911.9--SLFN12L:  73%|███████▎  | 54/74 [00:05<00:02,  9.17it/s]
Processing AC015911.9--SLFN12L:  74%|███████▍  | 55/74 [00:06<00:02,  9.17it/s]
Processing NF1--AL353742.1:  74%|███████▍  | 55/74 [00:06<00:02,  9.17it/s]    
Processing NF1--AL353742.1:  76%|███████▌  | 56/74 [00:06<00:01,  9.18it/s]
Processing NF1--AL669983.1:  76%|███████▌  | 56/74 [00:06<00:01,  9.18it/s]
Processing NF1--AL669983.1:  77%|███████▋  | 57/74 [00:06<00:01,  9.18it/s]
Processing MAD1L1--SDK1:  77%|███████▋  | 57/74 [00:06<00:01,  9.18it/s]   
Processing MAD1L1--SDK1:  78%|███████▊  | 58/74 [00:06<00:01,  9.19it/s]
Processing PSMD14--AC005040.2:  78%|███████▊  | 58/74 [00:06<00:01,  9.19it/s]
Processing PSMD14--AC005040.2:  80%|███████▉  | 59/74 [00:06<00:01,  9.19it/s]
Processing PSMD14--LINC01789:  80%|███████▉  | 59/74 [00:06<00:01,  9.19it/s] 
Processing PSMD14--LINC01789:  81%|████████  | 60/74 [00:06<00:01,  9.19it/s]
Processing TVP23C--CDRT4:  81%|████████  | 60/74 [00:06<00:01,  9.19it/s]    
Processing TVP23C--CDRT4:  82%|████████▏ | 61/74 [00:06<00:01,  9.19it/s]
Processing CERCAM--VDAC3:  82%|████████▏ | 61/74 [00:06<00:01,  9.19it/s]
Processing CERCAM--VDAC3:  84%|████████▍ | 62/74 [00:06<00:01,  9.19it/s]
Processing CERCAM--SLC20A2:  84%|████████▍ | 62/74 [00:06<00:01,  9.19it/s]
Processing CERCAM--SLC20A2:  85%|████████▌ | 63/74 [00:06<00:01,  9.19it/s]
Processing WT1--AC005357.2:  85%|████████▌ | 63/74 [00:06<00:01,  9.19it/s]
Processing WT1--AC005357.2:  86%|████████▋ | 64/74 [00:06<00:01,  9.19it/s]
Processing ZNF528--ZNF610:  86%|████████▋ | 64/74 [00:06<00:01,  9.19it/s] 
Processing ZNF528--ZNF610:  88%|████████▊ | 65/74 [00:07<00:00,  9.19it/s]
Processing ZNF528--ZNF880:  88%|████████▊ | 65/74 [00:07<00:00,  9.19it/s]
Processing ZNF528--ZNF880:  89%|████████▉ | 66/74 [00:07<00:00,  9.19it/s]
Processing LINC00937--AC083906.5:  89%|████████▉ | 66/74 [00:07<00:00,  9.19it/s]
Processing LINC00937--AC083906.5:  91%|█████████ | 67/74 [00:07<00:00,  9.19it/s]
Processing LINC00937--AC083906.2:  91%|█████████ | 67/74 [00:07<00:00,  9.19it/s]
Processing LINC00937--AC083906.2:  92%|█████████▏| 68/74 [00:07<00:00,  9.19it/s]
Processing SDHA--PLEKHG4B:  92%|█████████▏| 68/74 [00:07<00:00,  9.19it/s]       
Processing SDHA--PLEKHG4B:  93%|█████████▎| 69/74 [00:07<00:00,  9.19it/s]
Processing AC092807.3--DDAH1:  93%|█████████▎| 69/74 [00:07<00:00,  9.19it/s]
Processing AC092807.3--DDAH1:  95%|█████████▍| 70/74 [00:07<00:00,  9.19it/s]
Processing C1orf112--F5:  95%|█████████▍| 70/74 [00:07<00:00,  9.19it/s]     
Processing C1orf112--F5:  96%|█████████▌| 71/74 [00:07<00:00,  9.19it/s]
Processing RSRC1--IL12A-AS1:  96%|█████████▌| 71/74 [00:07<00:00,  9.19it/s]
Processing RSRC1--IL12A-AS1:  97%|█████████▋| 72/74 [00:07<00:00,  9.19it/s]
Processing TRIM37--AC022523.1:  97%|█████████▋| 72/74 [00:07<00:00,  9.19it/s]
Processing TRIM37--AC022523.1:  99%|█████████▊| 73/74 [00:07<00:00,  9.20it/s]
Processing WASH8P--WASH8P:  99%|█████████▊| 73/74 [00:07<00:00,  9.20it/s]    
Processing WASH8P--WASH8P: 100%|██████████| 74/74 [00:08<00:00,  9.19it/s]
Processing WASH8P--WASH8P: 100%|██████████| 74/74 [00:08<00:00,  9.17it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory