File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/6ef96176cae79787a6a948d2e0512f/.command.log
Size
3.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-f26674-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/c2684b5d39ba5949171c64c463d9bd/aih-tih-sc-f26674-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/6ef96176cae79787a6a948d2e0512f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/6ef96176cae79787a6a948d2e0512f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/42be67412c30340187bd48ab2109b3/aih-tih-sc-f26674-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
LPP--TPRG1
starfusion
TLK2P1--AC110079.1
starfusion
FRMD8--AP000944.1
starfusion
arriba
TLK2--AC240565.1
starfusion
LINC00381--NKAIN2
starfusion
AFF1--PTPN13
starfusion
SRPRB--ROBO1
starfusion
GUCY1B2--NKAIN2
starfusion
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
AC015911.9--SLFN12L
arriba
AC092807.3--DDAH1
arriba
EFL1--GOLGA6L11P
arriba
CCDC169--SOHLH2
arriba

  0%|          | 0/14 [00:00<?, ?it/s]
Processing LPP--TPRG1:   0%|          | 0/14 [00:00<?, ?it/s]
Processing LPP--TPRG1:   7%|▋         | 1/14 [00:00<00:01,  9.22it/s]
Processing TLK2P1--AC110079.1:   7%|▋         | 1/14 [00:00<00:01,  9.22it/s]
Processing TLK2P1--AC110079.1:  14%|█▍        | 2/14 [00:00<00:01,  9.45it/s]
Processing FRMD8--AP000944.1:  14%|█▍        | 2/14 [00:00<00:01,  9.45it/s] 
Processing FRMD8--AP000944.1:  21%|██▏       | 3/14 [00:00<00:01,  9.53it/s]
Processing TLK2--AC240565.1:  21%|██▏       | 3/14 [00:00<00:01,  9.53it/s] 
Processing TLK2--AC240565.1:  29%|██▊       | 4/14 [00:00<00:01,  9.57it/s]
Processing LINC00381--NKAIN2:  29%|██▊       | 4/14 [00:00<00:01,  9.57it/s]
Processing LINC00381--NKAIN2:  36%|███▌      | 5/14 [00:00<00:00,  9.60it/s]
Processing AFF1--PTPN13:  36%|███▌      | 5/14 [00:00<00:00,  9.60it/s]     
Processing AFF1--PTPN13:  43%|████▎     | 6/14 [00:00<00:00,  9.61it/s]
Processing SRPRB--ROBO1:  43%|████▎     | 6/14 [00:00<00:00,  9.61it/s]
Processing SRPRB--ROBO1:  50%|█████     | 7/14 [00:00<00:00,  9.62it/s]
Processing GUCY1B2--NKAIN2:  50%|█████     | 7/14 [00:00<00:00,  9.62it/s]
Processing GUCY1B2--NKAIN2:  57%|█████▋    | 8/14 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  57%|█████▋    | 8/14 [00:00<00:00,  9.63it/s]  
Processing TVP23C--CDRT4:  64%|██████▍   | 9/14 [00:00<00:00,  9.63it/s]
Processing STX16--NPEPL1:  64%|██████▍   | 9/14 [00:00<00:00,  9.63it/s]
Processing STX16--NPEPL1:  71%|███████▏  | 10/14 [00:01<00:00,  9.64it/s]
Processing AC015911.9--SLFN12L:  71%|███████▏  | 10/14 [00:01<00:00,  9.64it/s]
Processing AC015911.9--SLFN12L:  79%|███████▊  | 11/14 [00:01<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  79%|███████▊  | 11/14 [00:01<00:00,  9.64it/s]  
Processing AC092807.3--DDAH1:  86%|████████▌ | 12/14 [00:01<00:00,  9.64it/s]
Processing EFL1--GOLGA6L11P:  86%|████████▌ | 12/14 [00:01<00:00,  9.64it/s] 
Processing EFL1--GOLGA6L11P:  93%|█████████▎| 13/14 [00:01<00:00,  9.65it/s]
Processing CCDC169--SOHLH2:  93%|█████████▎| 13/14 [00:01<00:00,  9.65it/s] 
Processing CCDC169--SOHLH2: 100%|██████████| 14/14 [00:01<00:00,  9.64it/s]
Processing CCDC169--SOHLH2: 100%|██████████| 14/14 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory