Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/82a89a22287c8a3843563408a3fb23/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusionreport.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/05ba6cc46dc8ab27a514a873620eca/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/54b6effc9afedc07d9440896ffbf4a/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_1.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/54b6effc9afedc07d9440896ffbf4a/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_2.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/05ba6cc46dc8ab27a514a873620eca/.command.run
==> STAGING COMPLETE (6 inputs)
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusionreport.tsv --gtf /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1 --shrink_introns --max_intron_length 1000
Done.
Execution Time = 0.13 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusionreport.tsv --gtf /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1 --shrink_introns --max_intron_length 1000
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/fusion_contigs.ok
Running: cp /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/cp_contigs_file_workdir
Running: cp /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/cp_gtf_file_workdir.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf > /tmp/nxf.20eeaIUwu7/cytoBand.txt
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf > /tmp/nxf.20eeaIUwu7/cytoBand.txt
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/cytoband.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed
-parsing GTF file: /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/merged_contig_gtf_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed.sorted.bed
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed.bedsort.ok
Running: bgzip -f /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed.sorted.bed
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed.bgzip.ok
Running: tabix -p bed /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed.sorted.bed.gz
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.bed.tabix.ok
Running: samtools faidx /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa
Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/merged_contig_fai.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf --CPU 8 --out_prefix aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star --out_dir /tmp/nxf.20eeaIUwu7/fi_workdir --reads "/tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_2.fastp.fastq.gz"
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
Jun 08 09:23:43 ..... started STAR run
Jun 08 09:23:43 ..... loading genome
Jun 08 09:25:30 ... generating Suffix Array index
Jun 08 09:29:59 ... completed Suffix Array index
Jun 08 09:30:00 ..... processing annotations GTF
Jun 08 09:30:00 ..... inserting junctions into the genome indices
Jun 08 09:31:01 ..... started mapping
Jun 08 10:23:50 ..... finished mapping
Jun 08 10:23:51 ..... started sorting BAM
Jun 08 10:23:55 ..... finished successfully
* Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
Execution Time = 60.30 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf --CPU 8 --out_prefix aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star --out_dir /tmp/nxf.20eeaIUwu7/fi_workdir --reads "/tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_2.fastp.fastq.gz"
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/run_STAR.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam --remove_dups
10:24:37 : INFO : Done.
Execution Time = 0.60 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam --remove_dups
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/mark_dup_reads.ok
Running: samtools index /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam
Execution Time = 0.07 minutes. CMD: samtools index /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/mark_dups_reads.index.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
-parsing GTF file: /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf
-parsing /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam
[10000]
[20000]
[30000]
[40000]
[50000]
[60000]
[70000]
[80000]
[90000]
[100000]
[110000]
[120000]
[130000]
[140000]
[150000]
[160000]
[170000]
[180000]
[190000]
[200000]
[210000]
[220000]
[230000]
[240000]
[250000]
[260000]
[270000]
[280000]
[290000]
[300000]
[310000]
[320000]
[330000]
[340000]
[350000]
[360000]
[370000]
[380000]
[390000]
[400000]
[410000]
[420000]
[430000]
[440000]
[450000]
[460000]
[470000]
[480000]
[490000]
[500000]
[510000]
[520000]
[530000]
[540000]
[550000]
[560000]
[570000]
[580000]
[590000]
[600000]
[610000]
[620000]
[630000]
[640000]
[650000]
[660000]
[670000]
[680000]
[690000]
[700000]
[710000]
[720000]
[730000]
[740000]
[750000]
[760000]
[770000]
[780000]
[790000]
[800000]
[810000]
[820000]
[830000]
[840000]
[850000]
[860000]
[870000]
[880000]
[890000]
[900000]
[910000]
[920000]
[930000]
[940000]
[950000]
[960000]
[970000]
[980000]
[990000]
[1000000]
[1010000]
[1020000]
[1030000]
[1040000]
[1050000]
[1060000]
[1070000]
[1080000]
[1090000]
[1100000]
[1110000]
[1120000]
[1130000]
[1140000]
[1150000]
[1160000]
[1170000]
[1180000]
[1190000]
[1200000]
[1210000]
[1220000]
[1230000]
[1240000]
[1250000]
[1260000]
[1270000]
[1280000]
[1290000]
[1300000]
[1310000]
[1320000]
[1330000]
[1340000]
[1350000]
[1360000]
[1370000]
[1380000]
[1390000]
[1400000]
[1410000]
[1420000]
[1430000]
[1440000]
[1450000]
[1460000]
[1470000]
[1480000]
[1490000]
[1500000]
[1510000]
[1520000]
[1530000]
[1540000]
[1550000]
[1560000]
[1570000]
[1580000]
[1590000]
[1600000]
[1610000]
[1620000]
[1630000]
[1640000]
[1650000]
[1660000]
[1670000]
[1680000]
[1690000]
[1700000]
[1710000]
[1720000]
[1730000]
[1740000]
[1750000]
[1760000]
[1770000]
[1780000]
[1790000]
[1800000]
[1810000]
[1820000]
[1830000]
[1840000]
[1850000]
[1860000]
[1870000]
[1880000]
[1890000]
[1900000]
[1910000]
[1920000]
[1930000]
[1940000]
[1950000]
[1960000]
[1970000]
[1980000]
[1990000]
[2000000]
[2010000]
[2020000]
[2030000]
[2040000]
[2050000]
[2060000]
[2070000]
[2080000]
[2090000]
[2100000]
[2110000]
[2120000]
[2130000]
[2140000]
[2150000]
[2160000]
[2170000]
[2180000]
[2190000]
[2200000]
[2210000]
[2220000]
[2230000]
[2240000]
[2250000]
[2260000]
[2270000]
[2280000]
[2290000]
[2300000]
[2310000]
[2320000]
[2330000]
[2340000]
[2350000]
[2360000]
[2370000]
[2380000]
[2390000]
[2400000]
[2410000]
[2420000]
[2430000]
[2440000]
[2450000]
[2460000]
[2470000]
[2480000]
[2490000]
[2500000]
[2510000]
[2520000]
[2530000]
[2540000]
[2550000]
[2560000]
[2570000]
[2580000]
[2590000]
[2600000]
[2610000]
[2620000]
[2630000]
[2640000]
[2650000]
[2660000]
[2670000]
[2680000]
[2690000]
[2700000]
[2710000]
[2720000]
[2730000]
[2740000]
[2750000]
[2760000]
[2770000]
[2780000]
[2790000]
[2800000]
[2810000]
[2820000]
[2830000]
[2840000]
[2850000]
[2860000]
[2870000]
[2880000]
[2890000]
[2900000]
[2910000]
[2920000]
[2930000]
[2940000]
[2950000]
[2960000]
[2970000]
[2980000]
[2990000]
[3000000]
[3010000]
[3020000]
[3030000]
[3040000]
[3050000]
[3060000]
[3070000]
[3080000]
[3090000]
[3100000]
[3110000]
[3120000]
[3130000]
[3140000]
[3150000]
[3160000]
[3170000]
[3180000]
[3190000]
[3200000]
[3210000]
[3220000]
[3230000]
[3240000]
[3250000]
[3260000]
[3270000]
[3280000]
[3290000]
[3300000]
[3310000]
[3320000]
[3330000]
[3340000]
[3350000]
[3360000]
[3370000]
[3380000]
[3390000]
[3400000]
[3410000]
[3420000]
[3430000]
[3440000]
[3450000]
[3460000]
[3470000]
[3480000]
[3490000]
[3500000]
[3510000]
[3520000]
[3530000]
[3540000]
[3550000]
[3560000]
[3570000]
[3580000]
[3590000]
[3600000]
[3610000]
[3620000]
[3630000]
[3640000]
[3650000]
[3660000]
[3670000]
[3680000]
[3690000]
[3700000]
[3710000]
[3720000]
[3730000]
[3740000]
[3750000]
[3760000]
[3770000]
[3780000]
[3790000]
[3800000]
[3810000]
[3820000]
[3830000]
[3840000]
[3850000]
[3860000]
[3870000]
[3880000]
[3890000]
[3900000]
[3910000]
[3920000]
[3930000]
[3940000]
[3950000]
[3960000]
[3970000]
[3980000]
[3990000]
[4000000]
[4010000]
[4020000]
[4030000]
[4040000]
[4050000]
[4060000]
[4070000]
[4080000]
[4090000]
[4100000]
[4110000]
[4120000]
[4130000]
[4140000]
[4150000]
[4160000]
[4170000]
[4180000]
[4190000]
[4200000]
[4210000]
[4220000]
[4230000]
[4240000]
[4250000]
[4260000]
[4270000]
[4280000]
[4290000]
[4300000]
[4310000]
[4320000]
[4330000]
[4340000]
[4350000]
[4360000]
[4370000]
[4380000]
[4390000]
[4400000]
[4410000]
[4420000]
[4430000]
[4440000]
[4450000]
[4460000]
[4470000]
[4480000]
[4490000]
[4500000]
[4510000]
[4520000]
[4530000]
[4540000]
[4550000]
[4560000]
[4570000]
[4580000]
[4590000]
[4600000]
[4610000]
[4620000]
[4630000]
[4640000]
[4650000]
[4660000]
[4670000]
[4680000]
[4690000]
[4700000]
[4710000]
[4720000]
[4730000]
[4740000]
[4750000]
[4760000]
[4770000]
[4780000]
[4790000]
[4800000]
[4810000]
[4820000]
[4830000]
[4840000]
[4850000]
[4860000]
[4870000]
[4880000]
[4890000]
[4900000]
[4910000]
[4920000]
[4930000]
[4940000]
[4950000]
[4960000]
[4970000]
[4980000]
[4990000]
[5000000]
[5010000]
[5020000]
[5030000]
[5040000]
[5050000]
[5060000]
[5070000]
[5080000]
[5090000]
[5100000]
[5110000]
[5120000]
[5130000]
[5140000]
[5150000]
[5160000]
[5170000]
[5180000]
[5190000]
[5200000]
[5210000]
[5220000]
[5230000]
[5240000]
[5250000]
[5260000]
[5270000]
[5280000]
[5290000]
[5300000]
[5310000]
[5320000]
[5330000]
[5340000]
[5350000]
[5360000]
[5370000]
[5380000]
[5390000]
[5400000]
[5410000]
[5420000]
[5430000]
[5440000]
[5450000]
[5460000]
[5470000]
[5480000]
[5490000]
[5500000]
[5510000]
[5520000]
[5530000]
[5540000]
[5550000]
[5560000]
[5570000]
[5580000]
[5590000]
[5600000]
[5610000]
[5620000]
[5630000]
[5640000]
[5650000]
[5660000]
[5670000]
[5680000]
[5690000]
[5700000]
[5710000]
[5720000]
[5730000]
[5740000]
[5750000]
[5760000]
[5770000]
[5780000]
[5790000]
[5800000]
[5810000]
[5820000]
[5830000]
[5840000]
[5850000]
[5860000]
[5870000]
[5880000]
[5890000]
[5900000]
[5910000]
[5920000]
[5930000]
[5940000]
[5950000]
[5960000]
[5970000]
[5980000]
[5990000]
[6000000]
[6010000]
[6020000]
[6030000]
[6040000]
[6050000]
[6060000]
[6070000]
[6080000]
[6090000]
[6100000]
[6110000]
[6120000]
[6130000]
[6140000]
[6150000]
[6160000]
[6170000]
[6180000]
[6190000]
[6200000]
[6210000]
[6220000]
[6230000]
[6240000]
[6250000]
[6260000]
[6270000]
[6280000]
[6290000]
[6300000]
[6310000]
[6320000]
[6330000]
[6340000]
[6350000]
[6360000]
[6370000]
[6380000]
[6390000]
[6400000]
[6410000]
[6420000]
[6430000]
[6440000]
[6450000]
[6460000]
[6470000]
[6480000]
[6490000]
[6500000]
[6510000]
[6520000]
[6530000]
[6540000]
[6550000]
[6560000]
[6570000]
[6580000]
[6590000]
[6600000]
[6610000]
[6620000]
[6630000]
[6640000]
[6650000]
[6660000]
[6670000]
[6680000]
[6690000]
[6700000]
[6710000]
[6720000]
[6730000]
[6740000]
[6750000]
[6760000]
[6770000]
[6780000]
[6790000]
[6800000]
[6810000]
[6820000]
[6830000]
[6840000]
[6850000]
[6860000]
[6870000]
[6880000]
[6890000]
[6900000]
[6910000]
[6920000]
[6930000]
[6940000]
[6950000]
[6960000]
[6970000]
[6980000]
[6990000]
[7000000]
[7010000]
[7020000]
[7030000]
[7040000]
[7050000]
[7060000]
[7070000]
[7080000]
[7090000]
[7100000]
[7110000]
[7120000]
[7130000]
[7140000]
[7150000]
[7160000]
[7170000]
[7180000]
[7190000]
[7200000]
[7210000]
[7220000]
[7230000]
[7240000]
[7250000]
[7260000]
[7270000]
[7280000]
[7290000]
[7300000]
[7310000]
[7320000]
[7330000]
[7340000]
[7350000]
[7360000]
[7370000]
[7380000]
[7390000]
[7400000]
[7410000]
[7420000]
[7430000]
[7440000]
[7450000]
[7460000]
[7470000]
[7480000]
[7490000]
[7500000]
[7510000] -done parsing /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
' ** passed ** ' => 4838,
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 34,
'small anchor length' => 9,
'per_id < 96' => 25212,
'low complexity anchor region' => 2,
'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 6,
'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 9,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 17,
'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 1,
'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 48,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 619,
'seq-similar region overlap' => 46,
'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 4,
'excessive soft clipping' => 32228,
'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 40,
'num genes matched < 2' => 42
};
-writing fusion junction support info.
Execution Time = 5.20 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
-outputting the spanning read info: /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
[1000]
[2000]
[3000]
[4000] -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000] -fusion SPANNING read extraction for scaff: ARID4B--OR2L3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000] -fusion SPANNING read extraction for scaff: BMP7--DHX35
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: BMP7--LINC01734
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000] -fusion SPANNING read extraction for scaff: CEP131--TSHZ2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000] -fusion SPANNING read extraction for scaff: CLPX--PDCD7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000]
[612000]
[613000]
[614000]
[615000]
[616000]
[617000]
[618000]
[619000]
[620000]
[621000]
[622000]
[623000]
[624000]
[625000]
[626000]
[627000]
[628000]
[629000]
[630000]
[631000]
[632000]
[633000]
[634000]
[635000]
[636000]
[637000]
[638000]
[639000]
[640000]
[641000]
[642000]
[643000]
[644000]
[645000]
[646000]
[647000]
[648000]
[649000]
[650000]
[651000]
[652000]
[653000]
[654000]
[655000]
[656000]
[657000]
[658000]
[659000]
[660000]
[661000]
[662000]
[663000]
[664000]
[665000]
[666000]
[667000]
[668000]
[669000]
[670000]
[671000]
[672000]
[673000]
[674000]
[675000]
[676000]
[677000]
[678000]
[679000]
[680000]
[681000]
[682000]
[683000]
[684000]
[685000]
[686000]
[687000]
[688000]
[689000]
[690000]
[691000]
[692000]
[693000]
[694000]
[695000]
[696000]
[697000]
[698000]
[699000]
[700000]
[701000]
[702000]
[703000]
[704000]
[705000]
[706000]
[707000]
[708000]
[709000]
[710000]
[711000]
[712000]
[713000]
[714000]
[715000]
[716000]
[717000]
[718000]
[719000]
[720000]
[721000]
[722000]
[723000]
[724000]
[725000]
[726000]
[727000]
[728000]
[729000]
[730000]
[731000]
[732000]
[733000]
[734000]
[735000]
[736000]
[737000]
[738000]
[739000]
[740000]
[741000]
[742000]
[743000]
[744000]
[745000]
[746000]
[747000]
[748000]
[749000]
[750000]
[751000]
[752000]
[753000]
[754000]
[755000]
[756000]
[757000]
[758000]
[759000]
[760000]
[761000]
[762000]
[763000]
[764000]
[765000]
[766000]
[767000]
[768000]
[769000]
[770000]
[771000]
[772000]
[773000]
[774000]
[775000]
[776000]
[777000]
[778000]
[779000]
[780000]
[781000]
[782000]
[783000]
[784000]
[785000]
[786000]
[787000]
[788000]
[789000]
[790000]
[791000]
[792000]
[793000]
[794000]
[795000]
[796000]
[797000]
[798000]
[799000]
[800000]
[801000]
[802000]
[803000]
[804000]
[805000]
[806000]
[807000]
[808000]
[809000]
[810000]
[811000]
[812000]
[813000]
[814000]
[815000]
[816000]
[817000]
[818000]
[819000]
[820000]
[821000]
[822000]
[823000]
[824000]
[825000]
[826000]
[827000]
[828000]
[829000]
[830000]
[831000]
[832000]
[833000]
[834000]
[835000]
[836000]
[837000]
[838000]
[839000]
[840000]
[841000]
[842000]
[843000]
[844000]
[845000]
[846000]
[847000]
[848000]
[849000]
[850000]
[851000]
[852000]
[853000]
[854000]
[855000]
[856000]
[857000]
[858000]
[859000]
[860000]
[861000]
[862000]
[863000]
[864000]
[865000]
[866000]
[867000]
[868000]
[869000]
[870000]
[871000]
[872000]
[873000]
[874000]
[875000]
[876000]
[877000]
[878000]
[879000]
[880000]
[881000]
[882000]
[883000]
[884000]
[885000]
[886000]
[887000]
[888000]
[889000]
[890000]
[891000]
[892000]
[893000]
[894000]
[895000]
[896000]
[897000]
[898000]
[899000]
[900000]
[901000]
[902000]
[903000]
[904000]
[905000]
[906000]
[907000]
[908000]
[909000]
[910000]
[911000]
[912000]
[913000]
[914000]
[915000]
[916000]
[917000]
[918000]
[919000]
[920000]
[921000]
[922000]
[923000]
[924000]
[925000]
[926000]
[927000]
[928000]
[929000]
[930000]
[931000]
[932000]
[933000]
[934000]
[935000]
[936000]
[937000]
[938000]
[939000]
[940000]
[941000]
[942000]
[943000]
[944000]
[945000]
[946000]
[947000]
[948000]
[949000]
[950000]
[951000]
[952000]
[953000]
[954000]
[955000]
[956000]
[957000]
[958000]
[959000]
[960000]
[961000]
[962000]
[963000]
[964000]
[965000]
[966000]
[967000]
[968000]
[969000]
[970000]
[971000]
[972000]
[973000]
[974000]
[975000]
[976000]
[977000]
[978000]
[979000]
[980000]
[981000]
[982000]
[983000]
[984000]
[985000]
[986000]
[987000]
[988000]
[989000]
[990000]
[991000]
[992000]
[993000]
[994000]
[995000]
[996000]
[997000]
[998000]
[999000]
[1000000]
[1001000]
[1002000]
[1003000]
[1004000]
[1005000]
[1006000]
[1007000]
[1008000]
[1009000]
[1010000]
[1011000]
[1012000]
[1013000]
[1014000]
[1015000]
[1016000]
[1017000]
[1018000]
[1019000]
[1020000]
[1021000]
[1022000]
[1023000]
[1024000]
[1025000]
[1026000]
[1027000]
[1028000]
[1029000]
[1030000]
[1031000]
[1032000]
[1033000]
[1034000]
[1035000]
[1036000]
[1037000]
[1038000]
[1039000]
[1040000]
[1041000]
[1042000]
[1043000]
[1044000]
[1045000]
[1046000]
[1047000]
[1048000]
[1049000]
[1050000]
[1051000]
[1052000]
[1053000]
[1054000]
[1055000]
[1056000]
[1057000]
[1058000]
[1059000]
[1060000]
[1061000]
[1062000]
[1063000]
[1064000]
[1065000]
[1066000]
[1067000]
[1068000]
[1069000]
[1070000]
[1071000]
[1072000]
[1073000]
[1074000]
[1075000]
[1076000]
[1077000]
[1078000]
[1079000]
[1080000]
[1081000]
[1082000]
[1083000]
[1084000]
[1085000]
[1086000]
[1087000]
[1088000]
[1089000]
[1090000]
[1091000]
[1092000]
[1093000]
[1094000]
[1095000]
[1096000]
[1097000]
[1098000]
[1099000]
[1100000]
[1101000]
[1102000]
[1103000]
[1104000]
[1105000]
[1106000]
[1107000]
[1108000]
[1109000]
[1110000]
[1111000]
[1112000]
[1113000]
[1114000]
[1115000]
[1116000]
[1117000]
[1118000]
[1119000]
[1120000]
[1121000]
[1122000]
[1123000]
[1124000]
[1125000]
[1126000]
[1127000]
[1128000]
[1129000]
[1130000]
[1131000]
[1132000]
[1133000]
[1134000]
[1135000]
[1136000]
[1137000]
[1138000]
[1139000]
[1140000]
[1141000]
[1142000]
[1143000]
[1144000]
[1145000]
[1146000]
[1147000]
[1148000]
[1149000]
[1150000]
[1151000]
[1152000]
[1153000]
[1154000]
[1155000]
[1156000]
[1157000]
[1158000]
[1159000]
[1160000]
[1161000]
[1162000]
[1163000]
[1164000]
[1165000]
[1166000]
[1167000]
[1168000]
[1169000]
[1170000]
[1171000]
[1172000]
[1173000]
[1174000]
[1175000]
[1176000]
[1177000]
[1178000]
[1179000]
[1180000]
[1181000]
[1182000]
[1183000]
[1184000]
[1185000]
[1186000]
[1187000]
[1188000]
[1189000]
[1190000]
[1191000]
[1192000]
[1193000]
[1194000]
[1195000]
[1196000]
[1197000]
[1198000]
[1199000]
[1200000]
[1201000]
[1202000]
[1203000]
[1204000]
[1205000]
[1206000]
[1207000]
[1208000]
[1209000]
[1210000]
[1211000]
[1212000]
[1213000]
[1214000]
[1215000]
[1216000]
[1217000]
[1218000]
[1219000]
[1220000]
[1221000]
[1222000]
[1223000]
[1224000]
[1225000]
[1226000]
[1227000]
[1228000]
[1229000]
[1230000]
[1231000]
[1232000]
[1233000]
[1234000]
[1235000]
[1236000]
[1237000]
[1238000]
[1239000]
[1240000]
[1241000]
[1242000]
[1243000]
[1244000]
[1245000]
[1246000]
[1247000]
[1248000]
[1249000]
[1250000]
[1251000]
[1252000]
[1253000]
[1254000]
[1255000]
[1256000]
[1257000]
[1258000]
[1259000]
[1260000]
[1261000]
[1262000]
[1263000]
[1264000]
[1265000]
[1266000]
[1267000]
[1268000]
[1269000]
[1270000]
[1271000]
[1272000]
[1273000]
[1274000]
[1275000]
[1276000]
[1277000]
[1278000]
[1279000]
[1280000]
[1281000]
[1282000]
[1283000]
[1284000]
[1285000]
[1286000]
[1287000]
[1288000]
[1289000]
[1290000]
[1291000]
[1292000]
[1293000]
[1294000]
[1295000]
[1296000]
[1297000]
[1298000]
[1299000]
[1300000]
[1301000]
[1302000]
[1303000]
[1304000]
[1305000]
[1306000]
[1307000]
[1308000]
[1309000]
[1310000]
[1311000]
[1312000]
[1313000]
[1314000]
[1315000]
[1316000]
[1317000]
[1318000]
[1319000]
[1320000]
[1321000]
[1322000]
[1323000]
[1324000]
[1325000]
[1326000]
[1327000]
[1328000]
[1329000]
[1330000]
[1331000]
[1332000]
[1333000]
[1334000]
[1335000]
[1336000]
[1337000]
[1338000]
[1339000]
[1340000]
[1341000]
[1342000]
[1343000]
[1344000]
[1345000]
[1346000]
[1347000]
[1348000]
[1349000]
[1350000]
[1351000]
[1352000]
[1353000]
[1354000]
[1355000]
[1356000]
[1357000]
[1358000]
[1359000]
[1360000]
[1361000]
[1362000]
[1363000]
[1364000]
[1365000]
[1366000]
[1367000]
[1368000]
[1369000]
[1370000]
[1371000]
[1372000]
[1373000]
[1374000]
[1375000]
[1376000]
[1377000]
[1378000]
[1379000]
[1380000]
[1381000]
[1382000]
[1383000]
[1384000]
[1385000]
[1386000]
[1387000]
[1388000]
[1389000]
[1390000]
[1391000]
[1392000]
[1393000]
[1394000]
[1395000]
[1396000]
[1397000]
[1398000]
[1399000]
[1400000]
[1401000]
[1402000]
[1403000]
[1404000]
[1405000]
[1406000]
[1407000]
[1408000]
[1409000]
[1410000]
[1411000]
[1412000]
[1413000]
[1414000]
[1415000]
[1416000]
[1417000]
[1418000]
[1419000]
[1420000]
[1421000]
[1422000]
[1423000]
[1424000]
[1425000]
[1426000]
[1427000]
[1428000]
[1429000]
[1430000]
[1431000]
[1432000]
[1433000]
[1434000]
[1435000]
[1436000]
[1437000]
[1438000]
[1439000]
[1440000]
[1441000]
[1442000]
[1443000]
[1444000]
[1445000]
[1446000]
[1447000]
[1448000]
[1449000]
[1450000]
[1451000]
[1452000]
[1453000]
[1454000]
[1455000]
[1456000]
[1457000]
[1458000]
[1459000]
[1460000]
[1461000]
[1462000]
[1463000]
[1464000]
[1465000]
[1466000]
[1467000]
[1468000]
[1469000]
[1470000]
[1471000]
[1472000]
[1473000]
[1474000]
[1475000]
[1476000]
[1477000]
[1478000]
[1479000]
[1480000]
[1481000]
[1482000]
[1483000]
[1484000]
[1485000]
[1486000]
[1487000]
[1488000]
[1489000]
[1490000]
[1491000]
[1492000]
[1493000]
[1494000]
[1495000]
[1496000]
[1497000]
[1498000]
[1499000]
[1500000]
[1501000]
[1502000]
[1503000]
[1504000]
[1505000]
[1506000]
[1507000]
[1508000]
[1509000]
[1510000]
[1511000]
[1512000]
[1513000]
[1514000]
[1515000]
[1516000]
[1517000]
[1518000]
[1519000]
[1520000]
[1521000]
[1522000]
[1523000]
[1524000]
[1525000]
[1526000]
[1527000]
[1528000]
[1529000]
[1530000]
[1531000]
[1532000]
[1533000]
[1534000]
[1535000]
[1536000]
[1537000]
[1538000]
[1539000]
[1540000]
[1541000]
[1542000]
[1543000]
[1544000]
[1545000]
[1546000]
[1547000]
[1548000]
[1549000]
[1550000]
[1551000]
[1552000]
[1553000]
[1554000]
[1555000]
[1556000]
[1557000]
[1558000]
[1559000]
[1560000]
[1561000]
[1562000]
[1563000]
[1564000]
[1565000]
[1566000]
[1567000]
[1568000]
[1569000]
[1570000]
[1571000]
[1572000]
[1573000]
[1574000]
[1575000]
[1576000]
[1577000]
[1578000]
[1579000]
[1580000]
[1581000]
[1582000]
[1583000]
[1584000]
[1585000]
[1586000]
[1587000]
[1588000]
[1589000]
[1590000]
[1591000]
[1592000]
[1593000]
[1594000]
[1595000]
[1596000]
[1597000]
[1598000]
[1599000]
[1600000]
[1601000]
[1602000]
[1603000]
[1604000]
[1605000]
[1606000]
[1607000]
[1608000]
[1609000]
[1610000]
[1611000]
[1612000]
[1613000]
[1614000]
[1615000]
[1616000]
[1617000]
[1618000]
[1619000]
[1620000]
[1621000]
[1622000]
[1623000]
[1624000]
[1625000]
[1626000]
[1627000]
[1628000]
[1629000]
[1630000]
[1631000]
[1632000]
[1633000]
[1634000]
[1635000]
[1636000]
[1637000]
[1638000]
[1639000]
[1640000]
[1641000]
[1642000]
[1643000]
[1644000]
[1645000]
[1646000]
[1647000]
[1648000]
[1649000]
[1650000]
[1651000]
[1652000]
[1653000]
[1654000]
[1655000]
[1656000]
[1657000]
[1658000]
[1659000]
[1660000]
[1661000]
[1662000]
[1663000]
[1664000]
[1665000]
[1666000]
[1667000]
[1668000]
[1669000]
[1670000]
[1671000]
[1672000]
[1673000]
[1674000]
[1675000]
[1676000]
[1677000]
[1678000]
[1679000]
[1680000]
[1681000]
[1682000]
[1683000]
[1684000]
[1685000]
[1686000]
[1687000]
[1688000]
[1689000]
[1690000]
[1691000]
[1692000]
[1693000]
[1694000]
[1695000]
[1696000]
[1697000]
[1698000]
[1699000]
[1700000]
[1701000]
[1702000]
[1703000]
[1704000]
[1705000]
[1706000]
[1707000]
[1708000]
[1709000]
[1710000]
[1711000]
[1712000]
[1713000]
[1714000]
[1715000]
[1716000]
[1717000]
[1718000]
[1719000]
[1720000]
[1721000]
[1722000]
[1723000]
[1724000]
[1725000]
[1726000]
[1727000]
[1728000]
[1729000]
[1730000]
[1731000]
[1732000]
[1733000]
[1734000]
[1735000]
[1736000]
[1737000]
[1738000]
[1739000]
[1740000]
[1741000]
[1742000]
[1743000]
[1744000]
[1745000]
[1746000]
[1747000]
[1748000]
[1749000]
[1750000]
[1751000]
[1752000]
[1753000]
[1754000]
[1755000]
[1756000]
[1757000]
[1758000]
[1759000]
[1760000]
[1761000]
[1762000]
[1763000]
[1764000]
[1765000]
[1766000]
[1767000]
[1768000]
[1769000]
[1770000]
[1771000]
[1772000]
[1773000]
[1774000]
[1775000]
[1776000]
[1777000]
[1778000]
[1779000]
[1780000]
[1781000]
[1782000]
[1783000]
[1784000]
[1785000]
[1786000]
[1787000]
[1788000]
[1789000]
[1790000]
[1791000]
[1792000]
[1793000]
[1794000]
[1795000]
[1796000]
[1797000]
[1798000]
[1799000]
[1800000]
[1801000]
[1802000]
[1803000]
[1804000]
[1805000]
[1806000]
[1807000]
[1808000]
[1809000]
[1810000]
[1811000]
[1812000]
[1813000]
[1814000]
[1815000]
[1816000]
[1817000]
[1818000]
[1819000]
[1820000]
[1821000]
[1822000]
[1823000]
[1824000]
[1825000]
[1826000]
[1827000]
[1828000]
[1829000]
[1830000]
[1831000]
[1832000]
[1833000]
[1834000]
[1835000]
[1836000]
[1837000]
[1838000]
[1839000]
[1840000]
[1841000]
[1842000]
[1843000]
[1844000]
[1845000]
[1846000]
[1847000]
[1848000]
[1849000]
[1850000]
[1851000]
[1852000]
[1853000]
[1854000]
[1855000]
[1856000]
[1857000]
[1858000]
[1859000]
[1860000]
[1861000]
[1862000]
[1863000]
[1864000]
[1865000]
[1866000]
[1867000]
[1868000]
[1869000]
[1870000]
[1871000]
[1872000]
[1873000]
[1874000]
[1875000]
[1876000]
[1877000]
[1878000]
[1879000]
[1880000]
[1881000]
[1882000]
[1883000]
[1884000]
[1885000]
[1886000]
[1887000]
[1888000]
[1889000]
[1890000]
[1891000]
[1892000]
[1893000]
[1894000]
[1895000]
[1896000]
[1897000]
[1898000]
[1899000]
[1900000]
[1901000]
[1902000]
[1903000]
[1904000]
[1905000]
[1906000]
[1907000]
[1908000]
[1909000]
[1910000]
[1911000]
[1912000]
[1913000]
[1914000]
[1915000]
[1916000]
[1917000]
[1918000]
[1919000]
[1920000]
[1921000]
[1922000]
[1923000]
[1924000]
[1925000]
[1926000]
[1927000]
[1928000]
[1929000]
[1930000]
[1931000]
[1932000]
[1933000]
[1934000]
[1935000]
[1936000]
[1937000]
[1938000]
[1939000]
[1940000]
[1941000]
[1942000]
[1943000]
[1944000]
[1945000]
[1946000]
[1947000]
[1948000]
[1949000]
[1950000]
[1951000]
[1952000]
[1953000]
[1954000]
[1955000]
[1956000]
[1957000]
[1958000]
[1959000]
[1960000]
[1961000]
[1962000]
[1963000]
[1964000]
[1965000]
[1966000]
[1967000]
[1968000]
[1969000]
[1970000]
[1971000]
[1972000]
[1973000]
[1974000]
[1975000]
[1976000]
[1977000]
[1978000]
[1979000]
[1980000]
[1981000]
[1982000]
[1983000]
[1984000]
[1985000]
[1986000]
[1987000]
[1988000]
[1989000]
[1990000]
[1991000]
[1992000]
[1993000]
[1994000]
[1995000]
[1996000]
[1997000]
[1998000]
[1999000]
[2000000]
[2001000]
[2002000]
[2003000]
[2004000]
[2005000]
[2006000]
[2007000]
[2008000]
[2009000]
[2010000]
[2011000]
[2012000]
[2013000]
[2014000]
[2015000]
[2016000]
[2017000]
[2018000]
[2019000]
[2020000]
[2021000]
[2022000]
[2023000]
[2024000]
[2025000]
[2026000]
[2027000]
[2028000]
[2029000]
[2030000]
[2031000]
[2032000]
[2033000]
[2034000]
[2035000]
[2036000]
[2037000]
[2038000]
[2039000]
[2040000]
[2041000]
[2042000]
[2043000]
[2044000]
[2045000]
[2046000]
[2047000]
[2048000]
[2049000]
[2050000]
[2051000]
[2052000]
[2053000]
[2054000]
[2055000]
[2056000]
[2057000]
[2058000]
[2059000]
[2060000]
[2061000]
[2062000]
[2063000]
[2064000]
[2065000]
[2066000]
[2067000]
[2068000]
[2069000]
[2070000]
[2071000]
[2072000]
[2073000]
[2074000]
[2075000]
[2076000]
[2077000]
[2078000]
[2079000]
[2080000]
[2081000]
[2082000]
[2083000]
[2084000]
[2085000]
[2086000]
[2087000]
[2088000]
[2089000]
[2090000]
[2091000]
[2092000]
[2093000]
[2094000]
[2095000]
[2096000]
[2097000]
[2098000]
[2099000]
[2100000]
[2101000]
[2102000]
[2103000]
[2104000]
[2105000]
[2106000]
[2107000]
[2108000]
[2109000]
[2110000]
[2111000]
[2112000]
[2113000]
[2114000]
[2115000]
[2116000]
[2117000]
[2118000]
[2119000]
[2120000]
[2121000]
[2122000]
[2123000]
[2124000]
[2125000]
[2126000]
[2127000]
[2128000]
[2129000]
[2130000]
[2131000]
[2132000]
[2133000]
[2134000]
[2135000]
[2136000]
[2137000]
[2138000]
[2139000]
[2140000]
[2141000]
[2142000]
[2143000]
[2144000]
[2145000]
[2146000]
[2147000]
[2148000]
[2149000]
[2150000]
[2151000]
[2152000]
[2153000]
[2154000]
[2155000]
[2156000]
[2157000]
[2158000]
[2159000]
[2160000]
[2161000]
[2162000]
[2163000]
[2164000]
[2165000]
[2166000]
[2167000]
[2168000]
[2169000]
[2170000]
[2171000]
[2172000]
[2173000]
[2174000]
[2175000]
[2176000]
[2177000]
[2178000]
[2179000]
[2180000]
[2181000]
[2182000]
[2183000]
[2184000]
[2185000]
[2186000]
[2187000]
[2188000]
[2189000]
[2190000]
[2191000]
[2192000]
[2193000]
[2194000]
[2195000]
[2196000]
[2197000]
[2198000]
[2199000]
[2200000]
[2201000]
[2202000]
[2203000]
[2204000]
[2205000]
[2206000]
[2207000]
[2208000]
[2209000]
[2210000] -fusion SPANNING read extraction for scaff: CLTC--EDEM2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000] -fusion SPANNING read extraction for scaff: FBXO25--AC240565.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000] -fusion SPANNING read extraction for scaff: FER1L4--PIGU
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000] -fusion SPANNING read extraction for scaff: FSIP1--AC013652.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000] -fusion SPANNING read extraction for scaff: HDGFL3--ARNT2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000] -fusion SPANNING read extraction for scaff: INTS1--JAZF1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000] -fusion SPANNING read extraction for scaff: ITCH--RALGAPB
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000] -fusion SPANNING read extraction for scaff: MAP2K1--PGPEP1L
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000] -fusion SPANNING read extraction for scaff: PACSIN2--SLCO2B1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000] -fusion SPANNING read extraction for scaff: PARD6B--NR1D1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000] -fusion SPANNING read extraction for scaff: PARP6--NRG4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000] -fusion SPANNING read extraction for scaff: PCDHA11--PCDHAC2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000] -fusion SPANNING read extraction for scaff: PCDHA11--PCDHAC1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHA11--PCDHA13
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000] -fusion SPANNING read extraction for scaff: PLEKHM1P1--KCNQ2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000] -fusion SPANNING read extraction for scaff: RBM34--OR2L3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000]
[612000]
[613000]
[614000]
[615000]
[616000]
[617000]
[618000]
[619000]
[620000]
[621000]
[622000]
[623000]
[624000]
[625000]
[626000]
[627000]
[628000]
[629000]
[630000]
[631000]
[632000]
[633000]
[634000]
[635000]
[636000]
[637000]
[638000]
[639000]
[640000]
[641000]
[642000]
[643000]
[644000]
[645000]
[646000]
[647000]
[648000]
[649000]
[650000]
[651000]
[652000]
[653000]
[654000]
[655000]
[656000]
[657000]
[658000]
[659000]
[660000]
[661000]
[662000]
[663000]
[664000]
[665000]
[666000]
[667000]
[668000]
[669000]
[670000]
[671000]
[672000]
[673000]
[674000]
[675000]
[676000]
[677000]
[678000]
[679000]
[680000]
[681000]
[682000]
[683000]
[684000]
[685000]
[686000]
[687000]
[688000]
[689000]
[690000]
[691000]
[692000]
[693000]
[694000]
[695000]
[696000]
[697000]
[698000]
[699000]
[700000]
[701000]
[702000]
[703000]
[704000]
[705000]
[706000]
[707000]
[708000]
[709000]
[710000]
[711000]
[712000]
[713000]
[714000]
[715000]
[716000]
[717000]
[718000]
[719000]
[720000]
[721000]
[722000]
[723000]
[724000]
[725000]
[726000]
[727000]
[728000]
[729000]
[730000]
[731000]
[732000]
[733000]
[734000]
[735000]
[736000]
[737000]
[738000]
[739000]
[740000]
[741000]
[742000]
[743000]
[744000]
[745000]
[746000]
[747000]
[748000]
[749000]
[750000]
[751000]
[752000]
[753000]
[754000]
[755000]
[756000]
[757000]
[758000]
[759000]
[760000]
[761000]
[762000]
[763000]
[764000]
[765000]
[766000]
[767000]
[768000]
[769000]
[770000]
[771000]
[772000]
[773000]
[774000]
[775000]
[776000]
[777000]
[778000]
[779000]
[780000]
[781000]
[782000]
[783000]
[784000]
[785000]
[786000]
[787000]
[788000]
[789000]
[790000]
[791000]
[792000]
[793000]
[794000]
[795000]
[796000]
[797000]
[798000]
[799000]
[800000]
[801000]
[802000]
[803000]
[804000]
[805000]
[806000]
[807000]
[808000]
[809000]
[810000]
[811000]
[812000]
[813000]
[814000]
[815000]
[816000]
[817000]
[818000]
[819000]
[820000]
[821000]
[822000]
[823000]
[824000]
[825000]
[826000]
[827000]
[828000]
[829000]
[830000]
[831000]
[832000]
[833000]
[834000]
[835000]
[836000]
[837000]
[838000]
[839000]
[840000]
[841000]
[842000]
[843000]
[844000]
[845000]
[846000]
[847000]
[848000]
[849000]
[850000]
[851000]
[852000]
[853000]
[854000]
[855000]
[856000]
[857000]
[858000]
[859000]
[860000]
[861000]
[862000]
[863000]
[864000]
[865000]
[866000]
[867000]
[868000]
[869000]
[870000]
[871000]
[872000]
[873000]
[874000]
[875000]
[876000]
[877000]
[878000]
[879000]
[880000]
[881000]
[882000]
[883000]
[884000]
[885000]
[886000]
[887000]
[888000]
[889000]
[890000]
[891000]
[892000]
[893000]
[894000]
[895000]
[896000]
[897000]
[898000]
[899000]
[900000]
[901000]
[902000]
[903000]
[904000]
[905000]
[906000]
[907000]
[908000]
[909000]
[910000]
[911000]
[912000]
[913000]
[914000]
[915000]
[916000]
[917000]
[918000]
[919000]
[920000]
[921000]
[922000]
[923000]
[924000]
[925000]
[926000]
[927000]
[928000]
[929000]
[930000]
[931000]
[932000]
[933000]
[934000]
[935000]
[936000]
[937000]
[938000]
[939000]
[940000]
[941000]
[942000]
[943000]
[944000]
[945000]
[946000]
[947000]
[948000]
[949000]
[950000]
[951000]
[952000]
[953000]
[954000]
[955000]
[956000]
[957000]
[958000]
[959000]
[960000]
[961000]
[962000]
[963000]
[964000]
[965000]
[966000]
[967000]
[968000]
[969000]
[970000]
[971000]
[972000]
[973000]
[974000]
[975000]
[976000]
[977000]
[978000]
[979000]
[980000]
[981000]
[982000]
[983000]
[984000]
[985000]
[986000]
[987000]
[988000]
[989000]
[990000]
[991000]
[992000]
[993000]
[994000]
[995000]
[996000]
[997000]
[998000]
[999000]
[1000000]
[1001000]
[1002000]
[1003000]
[1004000]
[1005000]
[1006000]
[1007000]
[1008000]
[1009000]
[1010000]
[1011000]
[1012000]
[1013000]
[1014000]
[1015000]
[1016000]
[1017000]
[1018000]
[1019000]
[1020000]
[1021000]
[1022000]
[1023000]
[1024000]
[1025000]
[1026000]
[1027000]
[1028000]
[1029000]
[1030000]
[1031000]
[1032000]
[1033000]
[1034000]
[1035000]
[1036000]
[1037000]
[1038000]
[1039000]
[1040000]
[1041000]
[1042000]
[1043000]
[1044000]
[1045000]
[1046000]
[1047000]
[1048000]
[1049000]
[1050000]
[1051000]
[1052000]
[1053000]
[1054000]
[1055000]
[1056000]
[1057000]
[1058000]
[1059000]
[1060000]
[1061000]
[1062000]
[1063000]
[1064000]
[1065000]
[1066000]
[1067000]
[1068000]
[1069000]
[1070000]
[1071000]
[1072000]
[1073000]
[1074000]
[1075000]
[1076000]
[1077000]
[1078000]
[1079000]
[1080000]
[1081000]
[1082000]
[1083000]
[1084000]
[1085000]
[1086000]
[1087000]
[1088000]
[1089000]
[1090000]
[1091000]
[1092000]
[1093000]
[1094000]
[1095000]
[1096000]
[1097000]
[1098000]
[1099000]
[1100000]
[1101000]
[1102000]
[1103000]
[1104000]
[1105000]
[1106000]
[1107000]
[1108000]
[1109000]
[1110000]
[1111000]
[1112000]
[1113000]
[1114000]
[1115000]
[1116000]
[1117000]
[1118000]
[1119000]
[1120000]
[1121000]
[1122000]
[1123000]
[1124000]
[1125000]
[1126000]
[1127000]
[1128000]
[1129000]
[1130000]
[1131000]
[1132000]
[1133000]
[1134000]
[1135000]
[1136000]
[1137000]
[1138000]
[1139000]
[1140000]
[1141000]
[1142000]
[1143000]
[1144000]
[1145000]
[1146000]
[1147000]
[1148000]
[1149000]
[1150000]
[1151000]
[1152000]
[1153000]
[1154000]
[1155000]
[1156000]
[1157000]
[1158000]
[1159000]
[1160000]
[1161000]
[1162000]
[1163000]
[1164000]
[1165000]
[1166000]
[1167000]
[1168000]
[1169000]
[1170000]
[1171000]
[1172000]
[1173000]
[1174000]
[1175000]
[1176000]
[1177000]
[1178000]
[1179000]
[1180000]
[1181000]
[1182000]
[1183000]
[1184000]
[1185000]
[1186000]
[1187000]
[1188000]
[1189000]
[1190000]
[1191000]
[1192000]
[1193000]
[1194000]
[1195000]
[1196000]
[1197000]
[1198000]
[1199000]
[1200000]
[1201000]
[1202000]
[1203000]
[1204000]
[1205000]
[1206000]
[1207000]
[1208000]
[1209000]
[1210000]
[1211000]
[1212000]
[1213000]
[1214000]
[1215000]
[1216000]
[1217000]
[1218000]
[1219000]
[1220000]
[1221000]
[1222000]
[1223000]
[1224000]
[1225000]
[1226000]
[1227000]
[1228000]
[1229000]
[1230000]
[1231000]
[1232000]
[1233000]
[1234000]
[1235000]
[1236000]
[1237000]
[1238000]
[1239000]
[1240000]
[1241000]
[1242000]
[1243000]
[1244000]
[1245000]
[1246000]
[1247000]
[1248000]
[1249000]
[1250000]
[1251000]
[1252000]
[1253000]
[1254000]
[1255000]
[1256000]
[1257000]
[1258000]
[1259000]
[1260000]
[1261000]
[1262000]
[1263000]
[1264000]
[1265000]
[1266000]
[1267000]
[1268000]
[1269000]
[1270000]
[1271000]
[1272000]
[1273000]
[1274000]
[1275000]
[1276000]
[1277000]
[1278000]
[1279000]
[1280000]
[1281000]
[1282000]
[1283000]
[1284000]
[1285000]
[1286000]
[1287000]
[1288000]
[1289000]
[1290000]
[1291000]
[1292000]
[1293000]
[1294000]
[1295000]
[1296000]
[1297000]
[1298000]
[1299000]
[1300000]
[1301000]
[1302000]
[1303000]
[1304000]
[1305000]
[1306000]
[1307000]
[1308000]
[1309000]
[1310000]
[1311000]
[1312000]
[1313000]
[1314000]
[1315000]
[1316000]
[1317000]
[1318000]
[1319000]
[1320000]
[1321000]
[1322000]
[1323000]
[1324000]
[1325000]
[1326000]
[1327000]
[1328000]
[1329000]
[1330000]
[1331000]
[1332000]
[1333000]
[1334000]
[1335000]
[1336000]
[1337000]
[1338000]
[1339000]
[1340000]
[1341000]
[1342000]
[1343000]
[1344000]
[1345000]
[1346000]
[1347000]
[1348000]
[1349000]
[1350000]
[1351000]
[1352000]
[1353000]
[1354000]
[1355000]
[1356000]
[1357000]
[1358000]
[1359000]
[1360000]
[1361000]
[1362000]
[1363000]
[1364000]
[1365000]
[1366000]
[1367000]
[1368000]
[1369000]
[1370000]
[1371000]
[1372000]
[1373000]
[1374000]
[1375000]
[1376000]
[1377000]
[1378000]
[1379000]
[1380000]
[1381000]
[1382000]
[1383000]
[1384000]
[1385000]
[1386000]
[1387000]
[1388000]
[1389000]
[1390000]
[1391000]
[1392000]
[1393000]
[1394000]
[1395000]
[1396000]
[1397000]
[1398000]
[1399000]
[1400000]
[1401000]
[1402000]
[1403000]
[1404000]
[1405000]
[1406000]
[1407000]
[1408000]
[1409000]
[1410000]
[1411000]
[1412000]
[1413000]
[1414000]
[1415000]
[1416000]
[1417000]
[1418000]
[1419000]
[1420000]
[1421000]
[1422000]
[1423000]
[1424000]
[1425000]
[1426000]
[1427000]
[1428000]
[1429000]
[1430000]
[1431000]
[1432000]
[1433000]
[1434000]
[1435000]
[1436000]
[1437000]
[1438000]
[1439000]
[1440000]
[1441000]
[1442000]
[1443000]
[1444000]
[1445000]
[1446000]
[1447000]
[1448000]
[1449000]
[1450000]
[1451000]
[1452000]
[1453000]
[1454000]
[1455000]
[1456000]
[1457000]
[1458000]
[1459000]
[1460000]
[1461000]
[1462000]
[1463000]
[1464000]
[1465000]
[1466000]
[1467000]
[1468000]
[1469000]
[1470000]
[1471000]
[1472000]
[1473000]
[1474000]
[1475000]
[1476000]
[1477000]
[1478000]
[1479000]
[1480000]
[1481000]
[1482000]
[1483000]
[1484000]
[1485000]
[1486000]
[1487000]
[1488000]
[1489000]
[1490000]
[1491000]
[1492000]
[1493000]
[1494000]
[1495000]
[1496000]
[1497000]
[1498000]
[1499000]
[1500000]
[1501000]
[1502000]
[1503000]
[1504000]
[1505000]
[1506000]
[1507000]
[1508000]
[1509000]
[1510000]
[1511000]
[1512000]
[1513000]
[1514000]
[1515000]
[1516000]
[1517000]
[1518000]
[1519000]
[1520000]
[1521000]
[1522000]
[1523000]
[1524000]
[1525000]
[1526000]
[1527000]
[1528000]
[1529000]
[1530000]
[1531000]
[1532000]
[1533000]
[1534000]
[1535000]
[1536000]
[1537000]
[1538000]
[1539000]
[1540000]
[1541000]
[1542000]
[1543000]
[1544000]
[1545000]
[1546000]
[1547000]
[1548000]
[1549000]
[1550000]
[1551000]
[1552000]
[1553000]
[1554000]
[1555000]
[1556000]
[1557000]
[1558000]
[1559000]
[1560000]
[1561000]
[1562000]
[1563000]
[1564000]
[1565000]
[1566000]
[1567000]
[1568000]
[1569000]
[1570000]
[1571000]
[1572000]
[1573000]
[1574000]
[1575000]
[1576000]
[1577000]
[1578000]
[1579000]
[1580000]
[1581000]
[1582000]
[1583000]
[1584000]
[1585000]
[1586000]
[1587000]
[1588000]
[1589000]
[1590000]
[1591000]
[1592000]
[1593000]
[1594000]
[1595000]
[1596000]
[1597000]
[1598000]
[1599000]
[1600000]
[1601000]
[1602000]
[1603000]
[1604000]
[1605000]
[1606000]
[1607000]
[1608000]
[1609000]
[1610000]
[1611000]
[1612000]
[1613000]
[1614000]
[1615000]
[1616000]
[1617000]
[1618000]
[1619000]
[1620000]
[1621000]
[1622000]
[1623000]
[1624000]
[1625000]
[1626000]
[1627000]
[1628000]
[1629000]
[1630000]
[1631000]
[1632000]
[1633000]
[1634000]
[1635000]
[1636000]
[1637000]
[1638000]
[1639000]
[1640000]
[1641000]
[1642000]
[1643000]
[1644000]
[1645000]
[1646000]
[1647000]
[1648000]
[1649000]
[1650000]
[1651000]
[1652000]
[1653000]
[1654000]
[1655000]
[1656000]
[1657000]
[1658000]
[1659000]
[1660000]
[1661000]
[1662000]
[1663000]
[1664000]
[1665000]
[1666000]
[1667000]
[1668000]
[1669000]
[1670000]
[1671000]
[1672000]
[1673000]
[1674000]
[1675000]
[1676000]
[1677000]
[1678000]
[1679000]
[1680000]
[1681000]
[1682000]
[1683000]
[1684000]
[1685000]
[1686000]
[1687000]
[1688000]
[1689000]
[1690000]
[1691000]
[1692000]
[1693000]
[1694000]
[1695000]
[1696000]
[1697000]
[1698000]
[1699000]
[1700000]
[1701000]
[1702000]
[1703000]
[1704000]
[1705000]
[1706000]
[1707000]
[1708000]
[1709000]
[1710000]
[1711000]
[1712000]
[1713000]
[1714000]
[1715000]
[1716000]
[1717000]
[1718000]
[1719000]
[1720000]
[1721000]
[1722000]
[1723000]
[1724000]
[1725000]
[1726000]
[1727000]
[1728000]
[1729000]
[1730000]
[1731000]
[1732000]
[1733000]
[1734000]
[1735000]
[1736000]
[1737000]
[1738000]
[1739000]
[1740000]
[1741000]
[1742000]
[1743000]
[1744000]
[1745000]
[1746000]
[1747000]
[1748000]
[1749000]
[1750000]
[1751000]
[1752000]
[1753000]
[1754000]
[1755000]
[1756000]
[1757000]
[1758000]
[1759000]
[1760000]
[1761000]
[1762000]
[1763000]
[1764000]
[1765000]
[1766000]
[1767000]
[1768000]
[1769000]
[1770000]
[1771000]
[1772000]
[1773000]
[1774000]
[1775000]
[1776000]
[1777000]
[1778000]
[1779000]
[1780000]
[1781000]
[1782000]
[1783000]
[1784000]
[1785000]
[1786000]
[1787000]
[1788000]
[1789000]
[1790000]
[1791000]
[1792000]
[1793000]
[1794000]
[1795000]
[1796000]
[1797000]
[1798000]
[1799000]
[1800000]
[1801000]
[1802000]
[1803000]
[1804000]
[1805000]
[1806000]
[1807000]
[1808000]
[1809000]
[1810000]
[1811000]
[1812000]
[1813000]
[1814000]
[1815000]
[1816000]
[1817000]
[1818000]
[1819000]
[1820000]
[1821000]
[1822000]
[1823000]
[1824000]
[1825000]
[1826000]
[1827000]
[1828000]
[1829000]
[1830000]
[1831000]
[1832000]
[1833000]
[1834000]
[1835000]
[1836000]
[1837000]
[1838000]
[1839000]
[1840000]
[1841000]
[1842000]
[1843000]
[1844000]
[1845000]
[1846000]
[1847000]
[1848000]
[1849000]
[1850000]
[1851000]
[1852000]
[1853000]
[1854000]
[1855000]
[1856000]
[1857000]
[1858000]
[1859000]
[1860000]
[1861000]
[1862000]
[1863000]
[1864000]
[1865000]
[1866000]
[1867000]
[1868000]
[1869000]
[1870000]
[1871000]
[1872000]
[1873000]
[1874000]
[1875000]
[1876000]
[1877000]
[1878000]
[1879000]
[1880000]
[1881000]
[1882000]
[1883000]
[1884000]
[1885000]
[1886000]
[1887000]
[1888000]
[1889000]
[1890000]
[1891000]
[1892000]
[1893000]
[1894000]
[1895000]
[1896000]
[1897000]
[1898000]
[1899000]
[1900000]
[1901000]
[1902000]
[1903000]
[1904000]
[1905000]
[1906000]
[1907000]
[1908000]
[1909000]
[1910000]
[1911000]
[1912000]
[1913000]
[1914000]
[1915000]
[1916000]
[1917000]
[1918000]
[1919000]
[1920000]
[1921000]
[1922000]
[1923000]
[1924000]
[1925000]
[1926000]
[1927000]
[1928000]
[1929000]
[1930000]
[1931000]
[1932000]
[1933000]
[1934000]
[1935000]
[1936000]
[1937000]
[1938000]
[1939000]
[1940000]
[1941000]
[1942000]
[1943000]
[1944000]
[1945000]
[1946000]
[1947000]
[1948000]
[1949000]
[1950000]
[1951000]
[1952000]
[1953000]
[1954000]
[1955000]
[1956000]
[1957000]
[1958000]
[1959000]
[1960000]
[1961000]
[1962000]
[1963000]
[1964000]
[1965000]
[1966000]
[1967000]
[1968000]
[1969000]
[1970000]
[1971000]
[1972000]
[1973000]
[1974000]
[1975000]
[1976000]
[1977000]
[1978000]
[1979000]
[1980000]
[1981000]
[1982000]
[1983000]
[1984000]
[1985000]
[1986000]
[1987000]
[1988000]
[1989000]
[1990000]
[1991000]
[1992000]
[1993000]
[1994000]
[1995000]
[1996000]
[1997000]
[1998000]
[1999000]
[2000000]
[2001000]
[2002000]
[2003000]
[2004000]
[2005000]
[2006000]
[2007000]
[2008000]
[2009000]
[2010000]
[2011000]
[2012000]
[2013000]
[2014000]
[2015000]
[2016000]
[2017000]
[2018000]
[2019000]
[2020000]
[2021000]
[2022000]
[2023000]
[2024000]
[2025000]
[2026000]
[2027000]
[2028000]
[2029000]
[2030000]
[2031000]
[2032000]
[2033000]
[2034000]
[2035000]
[2036000]
[2037000]
[2038000]
[2039000]
[2040000]
[2041000]
[2042000]
[2043000]
[2044000]
[2045000]
[2046000]
[2047000]
[2048000]
[2049000]
[2050000]
[2051000]
[2052000]
[2053000]
[2054000]
[2055000]
[2056000]
[2057000]
[2058000]
[2059000]
[2060000]
[2061000]
[2062000]
[2063000]
[2064000]
[2065000]
[2066000]
[2067000]
[2068000]
[2069000]
[2070000]
[2071000]
[2072000]
[2073000]
[2074000]
[2075000]
[2076000]
[2077000]
[2078000]
[2079000]
[2080000]
[2081000]
[2082000]
[2083000]
[2084000]
[2085000]
[2086000]
[2087000]
[2088000]
[2089000]
[2090000]
[2091000]
[2092000]
[2093000]
[2094000]
[2095000]
[2096000]
[2097000]
[2098000]
[2099000]
[2100000]
[2101000]
[2102000]
[2103000]
[2104000]
[2105000]
[2106000]
[2107000]
[2108000]
[2109000]
[2110000]
[2111000]
[2112000]
[2113000]
[2114000]
[2115000]
[2116000]
[2117000]
[2118000]
[2119000]
[2120000]
[2121000]
[2122000]
[2123000]
[2124000]
[2125000]
[2126000]
[2127000]
[2128000]
[2129000]
[2130000]
[2131000]
[2132000]
[2133000]
[2134000]
[2135000]
[2136000]
[2137000]
[2138000]
[2139000]
[2140000]
[2141000]
[2142000]
[2143000]
[2144000]
[2145000]
[2146000]
[2147000]
[2148000]
[2149000]
[2150000]
[2151000]
[2152000]
[2153000]
[2154000]
[2155000]
[2156000]
[2157000]
[2158000]
[2159000]
[2160000]
[2161000]
[2162000]
[2163000]
[2164000]
[2165000]
[2166000]
[2167000]
[2168000]
[2169000]
[2170000]
[2171000]
[2172000]
[2173000]
[2174000]
[2175000]
[2176000]
[2177000]
[2178000]
[2179000]
[2180000]
[2181000]
[2182000]
[2183000]
[2184000]
[2185000]
[2186000]
[2187000]
[2188000]
[2189000]
[2190000]
[2191000]
[2192000]
[2193000]
[2194000]
[2195000]
[2196000]
[2197000]
[2198000]
[2199000]
[2200000]
[2201000]
[2202000]
[2203000]
[2204000]
[2205000]
[2206000]
[2207000]
[2208000]
[2209000]
[2210000]
[2211000]
[2212000]
[2213000]
[2214000]
[2215000]
[2216000]
[2217000]
[2218000]
[2219000]
[2220000]
[2221000]
[2222000]
[2223000]
[2224000]
[2225000]
[2226000]
[2227000]
[2228000]
[2229000]
[2230000]
[2231000]
[2232000]
[2233000]
[2234000]
[2235000]
[2236000]
[2237000]
[2238000]
[2239000]
[2240000]
[2241000]
[2242000]
[2243000]
[2244000]
[2245000]
[2246000]
[2247000]
[2248000]
[2249000]
[2250000]
[2251000]
[2252000]
[2253000]
[2254000]
[2255000]
[2256000]
[2257000]
[2258000]
[2259000]
[2260000]
[2261000]
[2262000]
[2263000]
[2264000]
[2265000]
[2266000]
[2267000]
[2268000]
[2269000]
[2270000]
[2271000]
[2272000]
[2273000]
[2274000]
[2275000]
[2276000]
[2277000]
[2278000]
[2279000]
[2280000]
[2281000]
[2282000]
[2283000]
[2284000]
[2285000]
[2286000]
[2287000]
[2288000]
[2289000]
[2290000]
[2291000]
[2292000]
[2293000]
[2294000]
[2295000]
[2296000]
[2297000]
[2298000]
[2299000]
[2300000]
[2301000]
[2302000]
[2303000]
[2304000]
[2305000]
[2306000]
[2307000]
[2308000]
[2309000]
[2310000]
[2311000]
[2312000]
[2313000]
[2314000]
[2315000]
[2316000]
[2317000]
[2318000]
[2319000]
[2320000]
[2321000]
[2322000]
[2323000]
[2324000]
[2325000]
[2326000]
[2327000]
[2328000]
[2329000]
[2330000]
[2331000]
[2332000]
[2333000]
[2334000]
[2335000]
[2336000]
[2337000]
[2338000]
[2339000]
[2340000]
[2341000]
[2342000]
[2343000]
[2344000]
[2345000]
[2346000]
[2347000]
[2348000]
[2349000]
[2350000]
[2351000]
[2352000]
[2353000]
[2354000]
[2355000]
[2356000]
[2357000]
[2358000]
[2359000]
[2360000]
[2361000]
[2362000]
[2363000]
[2364000]
[2365000]
[2366000]
[2367000]
[2368000]
[2369000]
[2370000]
[2371000]
[2372000]
[2373000]
[2374000]
[2375000]
[2376000]
[2377000]
[2378000]
[2379000]
[2380000]
[2381000]
[2382000]
[2383000]
[2384000]
[2385000]
[2386000]
[2387000]
[2388000]
[2389000]
[2390000]
[2391000]
[2392000]
[2393000]
[2394000]
[2395000]
[2396000]
[2397000]
[2398000]
[2399000]
[2400000]
[2401000]
[2402000]
[2403000]
[2404000]
[2405000]
[2406000]
[2407000]
[2408000]
[2409000]
[2410000]
[2411000]
[2412000]
[2413000]
[2414000]
[2415000]
[2416000]
[2417000]
[2418000]
[2419000]
[2420000]
[2421000]
[2422000]
[2423000]
[2424000]
[2425000]
[2426000]
[2427000]
[2428000]
[2429000]
[2430000]
[2431000]
[2432000]
[2433000]
[2434000]
[2435000]
[2436000]
[2437000]
[2438000]
[2439000]
[2440000]
[2441000]
[2442000]
[2443000]
[2444000]
[2445000]
[2446000]
[2447000]
[2448000]
[2449000]
[2450000]
[2451000]
[2452000]
[2453000]
[2454000]
[2455000]
[2456000]
[2457000]
[2458000]
[2459000]
[2460000]
[2461000]
[2462000]
[2463000]
[2464000]
[2465000]
[2466000]
[2467000]
[2468000]
[2469000] -fusion SPANNING read extraction for scaff: RNF213--SRCIN1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000] -fusion SPANNING read extraction for scaff: RPN2--CNBD2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000] -fusion SPANNING read extraction for scaff: RPN2--NORAD
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000] -fusion SPANNING read extraction for scaff: RPS6KB1--VMP1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000] -fusion SPANNING read extraction for scaff: RPS6KB1--NKILA
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000] -fusion SPANNING read extraction for scaff: RPS6KB1--AL162291.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000] -fusion SPANNING read extraction for scaff: RPS6KB1--AL118523.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000] -fusion SPANNING read extraction for scaff: RPS6KB1--HSPE1P1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000] -fusion SPANNING read extraction for scaff: SMURF2--CSH1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: SYNGR1--TTLL1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000] -fusion SPANNING read extraction for scaff: TFB2M--CNST
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000] -fusion SPANNING read extraction for scaff: TMX2--MS4A6E
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000] -fusion SPANNING read extraction for scaff: TTC6--MIPOL1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000] -fusion SPANNING read extraction for scaff: TTLL12--SLCO2B1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
-filtered reads reasons: $VAR1 = {
'seq similar region alignment' => 9034,
'lacks exon overlap' => 55889
};
Execution Time = 12.96 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/coalesce_junc_n_span.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj
EM: Starting log likelihood: -7608.891417
EM: Round [1] log likelihood: -7608.573093
EM: Round [2] log likelihood: -7608.533994
EM: Round [3] log likelihood: -7608.497838
EM: Round [4] log likelihood: -7608.463895
EM: Round [5] log likelihood: -7608.431990
EM: Round [6] log likelihood: -7608.401970
EM: Round [7] log likelihood: -7608.373697
EM: Round [8] log likelihood: -7608.347048
EM: Round [9] log likelihood: -7608.321909
EM: Round [10] log likelihood: -7608.298178
EM: Round [11] log likelihood: -7608.275761
EM: Round [12] log likelihood: -7608.254571
EM: Round [13] log likelihood: -7608.234529
EM: Round [14] log likelihood: -7608.215562
EM: Round [15] log likelihood: -7608.197604
EM: Round [16] log likelihood: -7608.180592
EM: Round [17] log likelihood: -7608.164470
EM: Round [18] log likelihood: -7608.149183
EM: Round [19] log likelihood: -7608.134683
EM: Round [20] log likelihood: -7608.120924
EM: Round [21] log likelihood: -7608.107863
EM: Round [22] log likelihood: -7608.095461
EM: Round [23] log likelihood: -7608.083680
EM: Round [24] log likelihood: -7608.072487
EM: Round [25] log likelihood: -7608.061848
EM: Round [26] log likelihood: -7608.051733
EM: Round [27] log likelihood: -7608.042115
EM: Round [28] log likelihood: -7608.032967
EM: Round [29] log likelihood: -7608.024263
EM: Round [30] log likelihood: -7608.015980
EM: Round [31] log likelihood: -7608.008096
EM: Round [32] log likelihood: -7608.000591
EM: Round [33] log likelihood: -7607.993445
EM: Round [34] log likelihood: -7607.986639
EM: Round [35] log likelihood: -7607.980156
EM: Round [36] log likelihood: -7607.973980
EM: Round [37] log likelihood: -7607.968096
EM: Round [38] log likelihood: -7607.962489
EM: Round [39] log likelihood: -7607.957144
EM: Round [40] log likelihood: -7607.952050
EM: Round [41] log likelihood: -7607.947193
EM: Round [42] log likelihood: -7607.942562
EM: Round [43] log likelihood: -7607.938147
EM: Round [44] log likelihood: -7607.933936
EM: Round [45] log likelihood: -7607.929919
EM: Round [46] log likelihood: -7607.926088
EM: Round [47] log likelihood: -7607.922433
EM: Round [48] log likelihood: -7607.918946
EM: Round [49] log likelihood: -7607.915620
EM: Round [50] log likelihood: -7607.912445
EM: Round [51] log likelihood: -7607.909415
EM: Round [52] log likelihood: -7607.906524
EM: Round [53] log likelihood: -7607.903764
EM: Round [54] log likelihood: -7607.901130
EM: Round [55] log likelihood: -7607.898616
EM: Round [56] log likelihood: -7607.896215
EM: Round [57] log likelihood: -7607.893923
EM: Round [58] log likelihood: -7607.891735
EM: Round [59] log likelihood: -7607.889646
EM: Round [60] log likelihood: -7607.887651
EM: Round [61] log likelihood: -7607.885745
EM: Round [62] log likelihood: -7607.883926
EM: Round [63] log likelihood: -7607.882188
EM: Round [64] log likelihood: -7607.880528
EM: Round [65] log likelihood: -7607.878943
EM: Round [66] log likelihood: -7607.877428
EM: Round [67] log likelihood: -7607.875982
EM: Round [68] log likelihood: -7607.874600
EM: Round [69] log likelihood: -7607.873280
EM: Round [70] log likelihood: -7607.872018
EM: Round [71] log likelihood: -7607.870813
EM: Round [72] log likelihood: -7607.869661
EM: Round [73] log likelihood: -7607.868561
EM: Round [74] log likelihood: -7607.867509
EM: Round [75] log likelihood: -7607.866505
EM: Round [76] log likelihood: -7607.865544
EM: Round [77] log likelihood: -7607.864627
EM: Round [78] log likelihood: -7607.863749
EM: Round [79] log likelihood: -7607.862911
EM: Round [80] log likelihood: -7607.862110
EM: Round [81] log likelihood: -7607.861344
EM: Round [82] log likelihood: -7607.860611
EM: Round [83] log likelihood: -7607.859911
EM: Round [84] log likelihood: -7607.859242
EM: Round [85] log likelihood: -7607.858602
EM: Round [86] log likelihood: -7607.857991
EM: Round [87] log likelihood: -7607.857406
EM: Round [88] log likelihood: -7607.856846
EM: Round [89] log likelihood: -7607.856312
EM: Round [90] log likelihood: -7607.855800
EM: Round [91] log likelihood: -7607.855311
EM: Round [92] log likelihood: -7607.854843
EM: Round [93] log likelihood: -7607.854396
EM: Round [94] log likelihood: -7607.853968
EM: Round [95] log likelihood: -7607.853559
EM: Round [96] log likelihood: -7607.853167
EM: Round [97] log likelihood: -7607.852792
EM: Round [98] log likelihood: -7607.852434
EM: Round [99] log likelihood: -7607.852091
EM: Round [100] log likelihood: -7607.851763
EM: Round [101] log likelihood: -7607.851449
EM: Round [102] log likelihood: -7607.851149
EM: Round [103] log likelihood: -7607.850861
EM: Round [104] log likelihood: -7607.850586
EM: Round [105] log likelihood: -7607.850323
EM: Round [106] log likelihood: -7607.850071
EM: Round [107] log likelihood: -7607.849829
EM: Round [108] log likelihood: -7607.849598
EM: Round [109] log likelihood: -7607.849377
EM: Round [110] log likelihood: -7607.849165
EM: Round [111] log likelihood: -7607.848963
EM: Round [112] log likelihood: -7607.848768
EM: Round [113] log likelihood: -7607.848582
EM: Round [114] log likelihood: -7607.848404
EM: Round [115] log likelihood: -7607.848234
EM: Round [116] log likelihood: -7607.848070
EM: Round [117] log likelihood: -7607.847914
EM: Round [118] log likelihood: -7607.847763
EM: Round [119] log likelihood: -7607.847620
EM: Round [120] log likelihood: -7607.847482
EM: Round [121] log likelihood: -7607.847350
EM: Round [122] log likelihood: -7607.847223
EM: Round [123] log likelihood: -7607.847102
EM: Round [124] log likelihood: -7607.846985
EM: Round [125] log likelihood: -7607.846873
EM: Round [126] log likelihood: -7607.846766
EM: Round [127] log likelihood: -7607.846664
EM: Round [128] log likelihood: -7607.846565
EM: Stopping iterations at round 128 due to insufficient improvement in likelihood.
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/init_EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/filter_by_frag_threshs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/prep_igv_extract_junc_reads.ok
Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam"
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
Execution Time = 0.00 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam"
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/prep_igv_junc_reads_bam.ok
Running: samtools index /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/samtools_idx_junc_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bed
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bed > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bed > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.junction_reads.bam.tabix.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/span_reads_acc.ok
Running: samtools view -H /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/init_spanning_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam || :
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam || :
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/prep_spanning_reads.ok
Running: samtools index /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/samtools_index_span_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bed
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bed > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bed > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.spanning_reads.bam.tabix.ok
Running: cp /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/cp_consol_bam.ok
Running: samtools index /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam
Execution Time = 0.08 minutes. CMD: samtools index /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/index_consol_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam --max_insert_size 10000000
-extracting read coordinates from /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam into /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam.read_coords
CMD: touch /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam.read_coords > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam.frag_coords.coord_sorted
Execution Time = 2.04 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam --max_insert_size 10000000
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/prep_igv_sam_frag_coordss.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.FusionJuncSpan
Execution Time = 0.04 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.FusionJuncSpan
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/prep_igv_juncspan_fmt.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.Pfam.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.Pfam.gff3
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/prep_igv_pfam_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.Pfam.gff3 > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.Pfam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.Pfam.gff3 > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.Pfam.bed
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/prep_igv_pfam_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.seqsimilar.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.seqsimilar.gff3
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/prep_igv_seqsim_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.seqsimilar.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.igv.seqsimilar.bed
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/prep_igv_seqsim_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa > /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/add_splice_info.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.20eeaIUwu7/fi_workdir/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/blast_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir
-done, see /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/annot_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
EM: Starting log likelihood: -7427.843588
EM: Round [1] log likelihood: -7427.772815
EM: Round [2] log likelihood: -7427.772413
EM: Round [3] log likelihood: -7427.772406
EM: Stopping iterations at round 3 due to insufficient improvement in likelihood.
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
-total frags in /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_1.fastp.fastq.gz: 260819378
Execution Time = 5.03 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/add_FFPM.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa --gtf /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf > /tmp/nxf.20eeaIUwu7/fi_workdir/microH.dat
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fa --gtf /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gtf > /tmp/nxf.20eeaIUwu7/fi_workdir/microH.dat
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/microH.dat.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.20eeaIUwu7/fi_workdir/microH.dat /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.20eeaIUwu7/fi_workdir/microH.dat /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/append_microH_info.ok
Running: cp /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.tsv
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.tsv
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/cp_final.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/final.abridged.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.20eeaIUwu7 --json_outfile /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_inspector_web.json --file_prefix aih-tih-sc-1274d4-R1_A23YTGFLT4_1
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.20eeaIUwu7 --json_outfile /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_inspector_web.json --file_prefix aih-tih-sc-1274d4-R1_A23YTGFLT4_1
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/create_fi_igvjs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_inspector_web.json --input_file_prefix aih-tih-sc-1274d4-R1_A23YTGFLT4_1 --html_output /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_inspector_web.html
Warning - not locating file: /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.gmap_trinity_GG.fusions.gff3.bed
Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_inspector_web.json --input_file_prefix aih-tih-sc-1274d4-R1_A23YTGFLT4_1 --html_output /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.fusion_inspector_web.html
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/fusion_reports_html.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/fusion_annotator.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000088340.17]
WARNING, no entry stored in dbm for [ENSG00000214176.9]
WARNING, no entry stored in dbm for [ENSG00000214176.9]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.20eeaIUwu7/ctat_genome_lib_build_dir > /tmp/nxf.20eeaIUwu7/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
Running: touch /tmp/nxf.20eeaIUwu7/chckpts_dir/fusion_coding_region_effect.ok
ls: cannot access 'IGV_inputs': No such file or directory