File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/05ba6cc46dc8ab27a514a873620eca/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:23:43
                             Started mapping on |	Jun 08 09:31:01
                                    Finished on |	Jun 08 10:23:55
       Mapping speed, Million of reads per hour |	295.83

                          Number of input reads |	260819378
                      Average input read length |	236
                                    UNIQUE READS:
                   Uniquely mapped reads number |	247334244
                        Uniquely mapped reads % |	94.83%
                          Average mapped length |	235.26
                       Number of splices: Total |	241501701
            Number of splices: Annotated (sjdb) |	237567738
                       Number of splices: GT/AG |	238649556
                       Number of splices: GC/AG |	1620433
                       Number of splices: AT/AC |	176267
               Number of splices: Non-canonical |	1055445
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.11
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.58
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	11021039
             % of reads mapped to multiple loci |	4.23%
        Number of reads mapped to too many loci |	404048
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1744809
                 % of reads unmapped: too short |	0.67%
                Number of reads unmapped: other |	315238
                     % of reads unmapped: other |	0.12%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%