File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/f2acef8ebad4bef109e179f1c93982/.command.log
Size
3.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-9703f5-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/fa854d5533f58c816b49e7774c802a/aih-tih-sc-9703f5-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/6bd66cd7d1b7de29b8551a48404c78/aih-tih-sc-9703f5-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/f2acef8ebad4bef109e179f1c93982/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/f2acef8ebad4bef109e179f1c93982/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
PLEKHA7--NAV2
starfusion
arriba
YTHDF3--MPPED2
starfusion
arriba
CPT1C--ZNF614
starfusion
arriba
ZNF83--CPT1C
starfusion
arriba
ZNF714--MED25
starfusion
arriba
VDAC3--CHRNB3
starfusion
AC016831.6--SRBD1
starfusion
ZNF71--IKBKB
arriba
STX16--NPEPL1
arriba
ZNF71--AC021613.1
arriba
TVP23C--CDRT4
arriba
IKBKB--AC021613.1
arriba

  0%|          | 0/12 [00:00<?, ?it/s]
Processing PLEKHA7--NAV2:   0%|          | 0/12 [00:00<?, ?it/s]
Processing PLEKHA7--NAV2:   8%|▊         | 1/12 [00:00<00:01,  9.06it/s]
Processing YTHDF3--MPPED2:   8%|▊         | 1/12 [00:00<00:01,  9.06it/s]
Processing YTHDF3--MPPED2:  17%|█▋        | 2/12 [00:00<00:01,  9.30it/s]
Processing CPT1C--ZNF614:  17%|█▋        | 2/12 [00:00<00:01,  9.30it/s] 
Processing CPT1C--ZNF614:  25%|██▌       | 3/12 [00:00<00:00,  9.38it/s]
Processing ZNF83--CPT1C:  25%|██▌       | 3/12 [00:00<00:00,  9.38it/s] 
Processing ZNF83--CPT1C:  33%|███▎      | 4/12 [00:00<00:00,  9.39it/s]
Processing ZNF714--MED25:  33%|███▎      | 4/12 [00:00<00:00,  9.39it/s]
Processing ZNF714--MED25:  42%|████▏     | 5/12 [00:00<00:00,  9.40it/s]
Processing VDAC3--CHRNB3:  42%|████▏     | 5/12 [00:00<00:00,  9.40it/s]
Processing VDAC3--CHRNB3:  50%|█████     | 6/12 [00:00<00:00,  9.43it/s]
Processing AC016831.6--SRBD1:  50%|█████     | 6/12 [00:00<00:00,  9.43it/s]
Processing AC016831.6--SRBD1:  58%|█████▊    | 7/12 [00:00<00:00,  9.45it/s]
Processing ZNF71--IKBKB:  58%|█████▊    | 7/12 [00:00<00:00,  9.45it/s]     
Processing ZNF71--IKBKB:  67%|██████▋   | 8/12 [00:00<00:00,  9.45it/s]
Processing STX16--NPEPL1:  67%|██████▋   | 8/12 [00:00<00:00,  9.45it/s]
Processing STX16--NPEPL1:  75%|███████▌  | 9/12 [00:00<00:00,  9.45it/s]
Processing ZNF71--AC021613.1:  75%|███████▌  | 9/12 [00:00<00:00,  9.45it/s]
Processing ZNF71--AC021613.1:  83%|████████▎ | 10/12 [00:01<00:00,  9.45it/s]
Processing TVP23C--CDRT4:  83%|████████▎ | 10/12 [00:01<00:00,  9.45it/s]    
Processing TVP23C--CDRT4:  92%|█████████▏| 11/12 [00:01<00:00,  9.44it/s]
Processing IKBKB--AC021613.1:  92%|█████████▏| 11/12 [00:01<00:00,  9.44it/s]
Processing IKBKB--AC021613.1: 100%|██████████| 12/12 [00:01<00:00,  9.45it/s]
Processing IKBKB--AC021613.1: 100%|██████████| 12/12 [00:01<00:00,  9.42it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory