Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/9046ff9a18fb2775abaab1c2fa435e/aih-tih-sc-45523c-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/2fd65b90e98f2aabedee030bb73c88/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/2fd65b90e98f2aabedee030bb73c88/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/522c15b90a488b29f43d20e3578c35/aih-tih-sc-45523c-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory