File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/d59a3f01e0fcb7f52b2f28645963c2/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:31:18
                             Started mapping on |	Jun 08 10:37:55
                                    Finished on |	Jun 08 11:29:11
       Mapping speed, Million of reads per hour |	347.23

                          Number of input reads |	296685615
                      Average input read length |	260
                                    UNIQUE READS:
                   Uniquely mapped reads number |	280784346
                        Uniquely mapped reads % |	94.64%
                          Average mapped length |	259.87
                       Number of splices: Total |	311988482
            Number of splices: Annotated (sjdb) |	307046246
                       Number of splices: GT/AG |	308473421
                       Number of splices: GC/AG |	2187744
                       Number of splices: AT/AC |	238775
               Number of splices: Non-canonical |	1088542
                      Mismatch rate per base, % |	0.17%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.98
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.81
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	12914856
             % of reads mapped to multiple loci |	4.35%
        Number of reads mapped to too many loci |	585117
             % of reads mapped to too many loci |	0.20%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2147210
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	254086
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%