File Info

Filename
aih-tih-sc-ffd2af-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/54fc8da466da010ea1953bb4fc1c51/aih-tih-sc-ffd2af-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:35:16
                             Started mapping on |	Jun 08 07:37:12
                                    Finished on |	Jun 08 08:17:26
       Mapping speed, Million of reads per hour |	327.49

                          Number of input reads |	219597035
                      Average input read length |	222
                                    UNIQUE READS:
                   Uniquely mapped reads number |	208511035
                        Uniquely mapped reads % |	94.95%
                          Average mapped length |	221.89
                       Number of splices: Total |	166039895
            Number of splices: Annotated (sjdb) |	163501481
                       Number of splices: GT/AG |	164311800
                       Number of splices: GC/AG |	1215574
                       Number of splices: AT/AC |	118963
               Number of splices: Non-canonical |	393558
                      Mismatch rate per base, % |	0.46%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.50
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6855730
             % of reads mapped to multiple loci |	3.12%
        Number of reads mapped to too many loci |	383816
             % of reads mapped to too many loci |	0.17%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	567444
       % of reads unmapped: too many mismatches |	0.26%
            Number of reads unmapped: too short |	1539916
                 % of reads unmapped: too short |	0.70%
                Number of reads unmapped: other |	222702
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2520995
                            % of chimeric reads |	1.15%