Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/2fb4b5af013b7151ea688f2d953360/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/942f2f9942a82c71495d138041e7e3/aih-tih-sc-28eb14-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/2fb4b5af013b7151ea688f2d953360/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/b74f27fff42ea4adf6b994f956ac5d/aih-tih-sc-28eb14-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
NUMA1--NSD3
starfusion
arriba
TMX2--MRPL48
starfusion
arriba
FGFR1--RAB11FIP1
starfusion
CTTN--PPP6R3
starfusion
arriba
AC069120.1--LETM2
starfusion
arriba
RNF169--TENM4
starfusion
arriba
PC--GINS4
starfusion
arriba
PIP4K2A--LRMDA
starfusion
arriba
PLPBP--GAB2
starfusion
DNAH14--VPS13B
starfusion
arriba
PI4KA--GGT3P
starfusion
arriba
SCAF8--SHROOM1
starfusion
arriba
VPS13B--DNAH14
starfusion
arriba
TLK2P1--AC110079.1
starfusion
arriba
FSIP1--AC013652.1
starfusion
arriba
TLK2--AC240565.1
starfusion
AP000867.4--ADGRA2
starfusion
arriba
GRK5--MGMT
starfusion
arriba
POLE--SLC15A4
starfusion
arriba
PPFIA1--CLNS1A
starfusion
arriba
ESR1--GPR37L1
starfusion
TVP23C--CDRT4
starfusion
arriba
OSCP1--CTPS1
starfusion
arriba
CR381653.1--AC007326.5
starfusion
AP000867.4--INTS4
starfusion
LRMDA--PIP4K2A
starfusion
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
SCAF8--SYNE1
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA10
arriba
CST9--CST9L
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
INTS4--RNF5P1
arriba
INTS4--AC016813.1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
CTTN--TENM4
arriba
NUMA1--GAB2
arriba
PCDHGA4--PCDHGC5
arriba
PCDHGA4--PCDHGA8
arriba
PCDHGA4--PCDHGC4
arriba
PCDHGA4--PCDHGC3
arriba
PCDHGA4--PCDHGB6
arriba
PCDHGA4--PCDHGB7
arriba
PCDHGA4--PCDHGA11
arriba
PCDHGA4--PCDHGA9
arriba
PCDHGA4--PCDHGA12
arriba
PCDHGA4--PCDHGA10
arriba
STX16--NPEPL1
arriba
SCAF8--RNA5SP192
arriba
LRP5--RN7SKP297
arriba
LRP5--CHRDL2
arriba
TENM4--AP001992.1
arriba
LRRC75B--SEZ6L
arriba
NPEPPS--RNA5SP526
arriba
NPEPPS--TBC1D3
arriba
AC108704.1--SLC15A4
arriba
GLT1D1--SLC15A4
arriba
0%| | 0/71 [00:00<?, ?it/s]
Processing NUMA1--NSD3: 0%| | 0/71 [00:00<?, ?it/s]
Processing NUMA1--NSD3: 1%|▏ | 1/71 [00:00<00:07, 9.23it/s]
Processing TMX2--MRPL48: 1%|▏ | 1/71 [00:00<00:07, 9.23it/s]
Processing TMX2--MRPL48: 3%|▎ | 2/71 [00:00<00:07, 9.46it/s]
Processing FGFR1--RAB11FIP1: 3%|▎ | 2/71 [00:00<00:07, 9.46it/s]
Processing FGFR1--RAB11FIP1: 4%|▍ | 3/71 [00:00<00:07, 9.53it/s]
Processing CTTN--PPP6R3: 4%|▍ | 3/71 [00:00<00:07, 9.53it/s]
Processing CTTN--PPP6R3: 6%|▌ | 4/71 [00:00<00:06, 9.57it/s]
Processing AC069120.1--LETM2: 6%|▌ | 4/71 [00:00<00:06, 9.57it/s]
Processing AC069120.1--LETM2: 7%|▋ | 5/71 [00:00<00:06, 9.59it/s]
Processing RNF169--TENM4: 7%|▋ | 5/71 [00:00<00:06, 9.59it/s]
Processing RNF169--TENM4: 8%|▊ | 6/71 [00:00<00:06, 9.60it/s]
Processing PC--GINS4: 8%|▊ | 6/71 [00:00<00:06, 9.60it/s]
Processing PC--GINS4: 10%|▉ | 7/71 [00:00<00:06, 9.61it/s]
Processing PIP4K2A--LRMDA: 10%|▉ | 7/71 [00:00<00:06, 9.61it/s]
Processing PIP4K2A--LRMDA: 11%|█▏ | 8/71 [00:00<00:06, 9.62it/s]
Processing PLPBP--GAB2: 11%|█▏ | 8/71 [00:00<00:06, 9.62it/s]
Processing PLPBP--GAB2: 13%|█▎ | 9/71 [00:00<00:06, 9.62it/s]
Processing DNAH14--VPS13B: 13%|█▎ | 9/71 [00:00<00:06, 9.62it/s]
Processing DNAH14--VPS13B: 14%|█▍ | 10/71 [00:01<00:06, 9.63it/s]
Processing PI4KA--GGT3P: 14%|█▍ | 10/71 [00:01<00:06, 9.63it/s]
Processing PI4KA--GGT3P: 15%|█▌ | 11/71 [00:01<00:06, 9.63it/s]
Processing SCAF8--SHROOM1: 15%|█▌ | 11/71 [00:01<00:06, 9.63it/s]
Processing SCAF8--SHROOM1: 17%|█▋ | 12/71 [00:01<00:06, 9.63it/s]
Processing VPS13B--DNAH14: 17%|█▋ | 12/71 [00:01<00:06, 9.63it/s]
Processing VPS13B--DNAH14: 18%|█▊ | 13/71 [00:01<00:06, 9.63it/s]
Processing TLK2P1--AC110079.1: 18%|█▊ | 13/71 [00:01<00:06, 9.63it/s]
Processing TLK2P1--AC110079.1: 20%|█▉ | 14/71 [00:01<00:05, 9.63it/s]
Processing FSIP1--AC013652.1: 20%|█▉ | 14/71 [00:01<00:05, 9.63it/s]
Processing FSIP1--AC013652.1: 21%|██ | 15/71 [00:01<00:05, 9.63it/s]
Processing TLK2--AC240565.1: 21%|██ | 15/71 [00:01<00:05, 9.63it/s]
Processing TLK2--AC240565.1: 23%|██▎ | 16/71 [00:01<00:05, 9.63it/s]
Processing AP000867.4--ADGRA2: 23%|██▎ | 16/71 [00:01<00:05, 9.63it/s]
Processing AP000867.4--ADGRA2: 24%|██▍ | 17/71 [00:01<00:05, 9.63it/s]
Processing GRK5--MGMT: 24%|██▍ | 17/71 [00:01<00:05, 9.63it/s]
Processing GRK5--MGMT: 25%|██▌ | 18/71 [00:01<00:05, 9.63it/s]
Processing POLE--SLC15A4: 25%|██▌ | 18/71 [00:01<00:05, 9.63it/s]
Processing POLE--SLC15A4: 27%|██▋ | 19/71 [00:01<00:05, 9.63it/s]
Processing PPFIA1--CLNS1A: 27%|██▋ | 19/71 [00:01<00:05, 9.63it/s]
Processing PPFIA1--CLNS1A: 28%|██▊ | 20/71 [00:02<00:05, 9.63it/s]
Processing ESR1--GPR37L1: 28%|██▊ | 20/71 [00:02<00:05, 9.63it/s]
Processing ESR1--GPR37L1: 30%|██▉ | 21/71 [00:02<00:05, 9.63it/s]
Processing TVP23C--CDRT4: 30%|██▉ | 21/71 [00:02<00:05, 9.63it/s]
Processing TVP23C--CDRT4: 31%|███ | 22/71 [00:02<00:05, 9.63it/s]
Processing OSCP1--CTPS1: 31%|███ | 22/71 [00:02<00:05, 9.63it/s]
Processing OSCP1--CTPS1: 32%|███▏ | 23/71 [00:02<00:04, 9.63it/s]
Processing CR381653.1--AC007326.5: 32%|███▏ | 23/71 [00:02<00:04, 9.63it/s]
Processing CR381653.1--AC007326.5: 34%|███▍ | 24/71 [00:02<00:04, 9.63it/s]
Processing AP000867.4--INTS4: 34%|███▍ | 24/71 [00:02<00:04, 9.63it/s]
Processing AP000867.4--INTS4: 35%|███▌ | 25/71 [00:02<00:04, 9.63it/s]
Processing LRMDA--PIP4K2A: 35%|███▌ | 25/71 [00:02<00:04, 9.63it/s]
Processing LRMDA--PIP4K2A: 37%|███▋ | 26/71 [00:02<00:04, 9.63it/s]
Processing PCDHA11--PCDHAC1: 37%|███▋ | 26/71 [00:02<00:04, 9.63it/s]
Processing PCDHA11--PCDHAC1: 38%|███▊ | 27/71 [00:02<00:04, 9.63it/s]
Processing PCDHA11--PCDHAC2: 38%|███▊ | 27/71 [00:02<00:04, 9.63it/s]
Processing PCDHA11--PCDHAC2: 39%|███▉ | 28/71 [00:02<00:04, 9.63it/s]
Processing PCDHA11--PCDHA13: 39%|███▉ | 28/71 [00:02<00:04, 9.63it/s]
Processing PCDHA11--PCDHA13: 41%|████ | 29/71 [00:03<00:04, 9.63it/s]
Processing SCAF8--SYNE1: 41%|████ | 29/71 [00:03<00:04, 9.63it/s]
Processing SCAF8--SYNE1: 42%|████▏ | 30/71 [00:03<00:04, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 42%|████▏ | 30/71 [00:03<00:04, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 44%|████▎ | 31/71 [00:03<00:04, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 44%|████▎ | 31/71 [00:03<00:04, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 45%|████▌ | 32/71 [00:03<00:04, 9.63it/s]
Processing PCDHGB2--PCDHGC4: 45%|████▌ | 32/71 [00:03<00:04, 9.63it/s]
Processing PCDHGB2--PCDHGC4: 46%|████▋ | 33/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGC3: 46%|████▋ | 33/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGC3: 48%|████▊ | 34/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGB6: 48%|████▊ | 34/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGB6: 49%|████▉ | 35/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGB7: 49%|████▉ | 35/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGB7: 51%|█████ | 36/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 51%|█████ | 36/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 52%|█████▏ | 37/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGA9: 52%|█████▏ | 37/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGA9: 54%|█████▎ | 38/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGA12: 54%|█████▎ | 38/71 [00:03<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGA12: 55%|█████▍ | 39/71 [00:04<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGA10: 55%|█████▍ | 39/71 [00:04<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGA10: 56%|█████▋ | 40/71 [00:04<00:03, 9.63it/s]
Processing CST9--CST9L: 56%|█████▋ | 40/71 [00:04<00:03, 9.63it/s]
Processing CST9--CST9L: 58%|█████▊ | 41/71 [00:04<00:03, 9.64it/s]
Processing PCDHA4--PCDHAC2: 58%|█████▊ | 41/71 [00:04<00:03, 9.64it/s]
Processing PCDHA4--PCDHAC2: 59%|█████▉ | 42/71 [00:04<00:03, 9.64it/s]
Processing PCDHA4--PCDHAC1: 59%|█████▉ | 42/71 [00:04<00:03, 9.64it/s]
Processing PCDHA4--PCDHAC1: 61%|██████ | 43/71 [00:04<00:02, 9.64it/s]
Processing PCDHA4--PCDHA13: 61%|██████ | 43/71 [00:04<00:02, 9.64it/s]
Processing PCDHA4--PCDHA13: 62%|██████▏ | 44/71 [00:04<00:02, 9.64it/s]
Processing INTS4--RNF5P1: 62%|██████▏ | 44/71 [00:04<00:02, 9.64it/s]
Processing INTS4--RNF5P1: 63%|██████▎ | 45/71 [00:04<00:02, 9.64it/s]
Processing INTS4--AC016813.1: 63%|██████▎ | 45/71 [00:04<00:02, 9.64it/s]
Processing INTS4--AC016813.1: 65%|██████▍ | 46/71 [00:04<00:02, 9.64it/s]
Processing PCDHA10--PCDHAC2: 65%|██████▍ | 46/71 [00:04<00:02, 9.64it/s]
Processing PCDHA10--PCDHAC2: 66%|██████▌ | 47/71 [00:04<00:02, 9.64it/s]
Processing PCDHA10--PCDHAC1: 66%|██████▌ | 47/71 [00:04<00:02, 9.64it/s]
Processing PCDHA10--PCDHAC1: 68%|██████▊ | 48/71 [00:04<00:02, 9.64it/s]
Processing PCDHA10--PCDHA13: 68%|██████▊ | 48/71 [00:04<00:02, 9.64it/s]
Processing PCDHA10--PCDHA13: 69%|██████▉ | 49/71 [00:05<00:02, 9.64it/s]
Processing CTTN--TENM4: 69%|██████▉ | 49/71 [00:05<00:02, 9.64it/s]
Processing CTTN--TENM4: 70%|███████ | 50/71 [00:05<00:02, 9.64it/s]
Processing NUMA1--GAB2: 70%|███████ | 50/71 [00:05<00:02, 9.64it/s]
Processing NUMA1--GAB2: 72%|███████▏ | 51/71 [00:05<00:02, 9.64it/s]
Processing PCDHGA4--PCDHGC5: 72%|███████▏ | 51/71 [00:05<00:02, 9.64it/s]
Processing PCDHGA4--PCDHGC5: 73%|███████▎ | 52/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGA8: 73%|███████▎ | 52/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGA8: 75%|███████▍ | 53/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGC4: 75%|███████▍ | 53/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGC4: 76%|███████▌ | 54/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGC3: 76%|███████▌ | 54/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGC3: 77%|███████▋ | 55/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGB6: 77%|███████▋ | 55/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGB6: 79%|███████▉ | 56/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGB7: 79%|███████▉ | 56/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGB7: 80%|████████ | 57/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGA11: 80%|████████ | 57/71 [00:05<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGA11: 82%|████████▏ | 58/71 [00:06<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGA9: 82%|████████▏ | 58/71 [00:06<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGA9: 83%|████████▎ | 59/71 [00:06<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGA12: 83%|████████▎ | 59/71 [00:06<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGA12: 85%|████████▍ | 60/71 [00:06<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGA10: 85%|████████▍ | 60/71 [00:06<00:01, 9.64it/s]
Processing PCDHGA4--PCDHGA10: 86%|████████▌ | 61/71 [00:06<00:01, 9.64it/s]
Processing STX16--NPEPL1: 86%|████████▌ | 61/71 [00:06<00:01, 9.64it/s]
Processing STX16--NPEPL1: 87%|████████▋ | 62/71 [00:06<00:00, 9.64it/s]
Processing SCAF8--RNA5SP192: 87%|████████▋ | 62/71 [00:06<00:00, 9.64it/s]
Processing SCAF8--RNA5SP192: 89%|████████▊ | 63/71 [00:06<00:00, 9.64it/s]
Processing LRP5--RN7SKP297: 89%|████████▊ | 63/71 [00:06<00:00, 9.64it/s]
Processing LRP5--RN7SKP297: 90%|█████████ | 64/71 [00:06<00:00, 9.64it/s]
Processing LRP5--CHRDL2: 90%|█████████ | 64/71 [00:06<00:00, 9.64it/s]
Processing LRP5--CHRDL2: 92%|█████████▏| 65/71 [00:06<00:00, 9.64it/s]
Processing TENM4--AP001992.1: 92%|█████████▏| 65/71 [00:06<00:00, 9.64it/s]
Processing TENM4--AP001992.1: 93%|█████████▎| 66/71 [00:06<00:00, 9.64it/s]
Processing LRRC75B--SEZ6L: 93%|█████████▎| 66/71 [00:06<00:00, 9.64it/s]
Processing LRRC75B--SEZ6L: 94%|█████████▍| 67/71 [00:06<00:00, 9.64it/s]
Processing NPEPPS--RNA5SP526: 94%|█████████▍| 67/71 [00:06<00:00, 9.64it/s]
Processing NPEPPS--RNA5SP526: 96%|█████████▌| 68/71 [00:07<00:00, 9.64it/s]
Processing NPEPPS--TBC1D3: 96%|█████████▌| 68/71 [00:07<00:00, 9.64it/s]
Processing NPEPPS--TBC1D3: 97%|█████████▋| 69/71 [00:07<00:00, 9.64it/s]
Processing AC108704.1--SLC15A4: 97%|█████████▋| 69/71 [00:07<00:00, 9.64it/s]
Processing AC108704.1--SLC15A4: 99%|█████████▊| 70/71 [00:07<00:00, 9.64it/s]
Processing GLT1D1--SLC15A4: 99%|█████████▊| 70/71 [00:07<00:00, 9.64it/s]
Processing GLT1D1--SLC15A4: 100%|██████████| 71/71 [00:07<00:00, 9.64it/s]
Processing GLT1D1--SLC15A4: 100%|██████████| 71/71 [00:07<00:00, 9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory