[quant] fragment length distribution will be estimated from the data [index] k-mer length: 31 [index] number of targets: 194,360 [index] number of k-mers: 112,035,259 [quant] running in paired-end mode [quant] will process pair 1: aih-tih-sc-3b436b-R1_A23YTGFLT4_1_1.fastp.fastq.gz aih-tih-sc-3b436b-R1_A23YTGFLT4_1_2.fastp.fastq.gz [quant] finding pseudoalignments for the reads ... [progress] 1M reads processed (97.8% mapped) [progress] 2M reads processed (97.7% mapped) [progress] 3M reads processed (97.7% mapped) [progress] 4M reads processed (97.7% mapped) [progress] 5M reads processed (97.7% mapped) [progress] 6M reads processed (97.7% mapped) [progress] 7M reads processed (97.7% mapped) [progress] 8M reads processed (97.7% mapped) [progress] 9M reads processed (97.7% mapped) [progress] 10M reads processed (97.7% mapped) [progress] 11M reads processed (97.7% mapped) [progress] 12M reads processed (97.7% mapped) [progress] 13M reads processed (97.7% mapped) [progress] 14M reads processed (97.7% mapped) [progress] 15M reads processed (97.7% mapped) [progress] 16M reads processed (97.7% mapped) [progress] 17M reads processed (97.7% mapped) [progress] 18M reads processed (97.7% mapped) [progress] 19M reads processed (97.7% mapped) [progress] 20M reads processed (97.7% mapped) [progress] 21M reads processed (97.7% mapped) [progress] 22M reads processed (97.7% 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[progress] 66M reads processed (97.7% mapped) [progress] 67M reads processed (97.7% mapped) [progress] 68M reads processed (97.7% mapped) [progress] 69M reads processed (97.7% mapped) [progress] 70M reads processed (97.7% mapped) [progress] 71M reads processed (97.7% mapped) [progress] 72M reads processed (97.7% mapped) [progress] 73M reads processed (97.7% mapped) [progress] 74M reads processed (97.7% mapped) [progress] 75M reads processed (97.7% mapped) [progress] 76M reads processed (97.7% mapped) [progress] 78M reads processed (97.7% mapped) [progress] 79M reads processed (97.7% mapped) [progress] 80M reads processed (97.7% mapped) [progress] 81M reads processed (97.7% mapped) [progress] 82M reads processed (97.7% mapped) [progress] 83M reads processed (97.7% mapped) [progress] 84M reads processed (97.7% mapped) [progress] 85M reads processed (97.7% mapped) [progress] 86M reads processed (97.7% mapped) [progress] 87M reads processed (97.7% mapped) [progress] 88M reads processed (97.7% mapped) [progress] 89M reads processed (97.7% mapped) [progress] 90M reads processed (97.7% mapped) [progress] 91M reads processed (97.7% mapped) [progress] 92M reads processed (97.7% mapped) [progress] 93M reads processed (97.7% mapped) [progress] 94M reads processed (97.7% mapped) [progress] 95M reads processed (97.7% mapped) [progress] 96M reads processed (97.7% mapped) [progress] 97M reads processed (97.7% mapped) [progress] 98M reads processed (97.7% mapped) [progress] 99M reads processed (97.7% mapped) [progress] 100M reads processed (97.7% mapped) [progress] 101M reads processed (97.7% mapped) [progress] 102M reads processed (97.7% mapped) [progress] 103M reads processed (97.7% mapped) [progress] 104M reads processed (97.7% mapped) [progress] 105M reads processed (97.7% mapped) [progress] 106M reads processed (97.7% mapped) [progress] 107M reads processed (97.7% mapped) [progress] 108M reads processed (97.7% mapped) [progress] 109M reads processed (97.7% mapped) [progress] 110M reads processed (97.7% mapped) [progress] 111M reads processed (97.7% mapped) [progress] 112M reads processed (97.7% mapped) [progress] 113M reads processed (97.7% mapped) [progress] 114M reads processed (97.7% mapped) [progress] 115M reads processed (97.7% mapped) [progress] 116M reads processed (97.7% mapped) [progress] 117M reads processed (97.7% mapped) [progress] 118M reads processed (97.7% mapped) [progress] 119M reads processed (97.7% mapped) [progress] 120M reads processed (97.7% mapped) [progress] 121M reads processed (97.7% mapped) [progress] 122M reads processed (97.7% mapped) [progress] 123M reads processed (97.7% mapped) [progress] 124M reads processed (97.7% mapped) [progress] 125M reads processed (97.7% mapped) [progress] 126M reads processed (97.7% mapped) [progress] 127M reads processed (97.7% mapped) [progress] 128M reads processed (97.7% mapped) done [quant] processed 128,811,120 reads, 125,857,521 reads pseudoaligned [quant] estimated average fragment length: 146.0 [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 1,361 rounds