File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/7e7df5b7d2f90dcbd6473b7fb75995/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:24:26
                             Started mapping on |	Jun 08 09:30:49
                                    Finished on |	Jun 08 10:10:56
       Mapping speed, Million of reads per hour |	344.46

                          Number of input reads |	230311121
                      Average input read length |	250
                                    UNIQUE READS:
                   Uniquely mapped reads number |	222661722
                        Uniquely mapped reads % |	96.68%
                          Average mapped length |	249.26
                       Number of splices: Total |	240501978
            Number of splices: Annotated (sjdb) |	237679316
                       Number of splices: GT/AG |	237758033
                       Number of splices: GC/AG |	1713210
                       Number of splices: AT/AC |	200747
               Number of splices: Non-canonical |	829988
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.62
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5617514
             % of reads mapped to multiple loci |	2.44%
        Number of reads mapped to too many loci |	235753
             % of reads mapped to too many loci |	0.10%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1564944
                 % of reads unmapped: too short |	0.68%
                Number of reads unmapped: other |	231188
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%