Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/b22df358d71ad14f045c2413ee6e2f/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/0f41ade7ea9d60193fd1578fcacf2f/fi_workdir/aih-tih-sc-9b89b4-R1_A23YTGFLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/b22df358d71ad14f045c2413ee6e2f/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 9728
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 9728
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:9728
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AGAP12P--FRMPD2 HAVANA gene 13554 48555 . + . FI_gene_label "FRMPD2^ENSG00000170324.21" ; ID "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; ccdsid "CCDS81460.1" ; exon_id "ENSE00001390154.1" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; gene_name FRMPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018171.7" ; havana_transcript "OTTHUMT00000277029.1" ; hgnc_id "HGNC:28572" ; level 2 ; orig_coord_info "chr10,48251566,48251710,-" ; protein_id "ENSP00000307079.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AGAP12P--FRMPD2^ENST00000305531.3" ; transcript_name "FRMPD2-201" ; transcript_support_level 5 ; transcript_type protein_coding
AGAP12P--FRMPD2 HAVANA mRNA 13554 48555 . + . FI_gene_label "FRMPD2^ENSG00000170324.21" ; ID "AGAP12P--FRMPD2^ENST00000305531.3" ; Parent "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; ccdsid "CCDS81460.1" ; exon_id "ENSE00001390154.1" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; gene_name FRMPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018171.7" ; havana_transcript "OTTHUMT00000277029.1" ; hgnc_id "HGNC:28572" ; level 2 ; orig_coord_info "chr10,48251566,48251710,-" ; protein_id "ENSP00000307079.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AGAP12P--FRMPD2^ENST00000305531.3" ; transcript_name "FRMPD2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AL669831.4--SEPTIN14 HAVANA gene 8876 22423 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AL669831.4--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AL669831.4--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL669831.4--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
AL669831.4--SEPTIN14 HAVANA mRNA 8876 22423 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AL669831.4--SEPTIN14^ENST00000388975.4" ; Parent "AL669831.4--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AL669831.4--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL669831.4--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ANKRD42--AC118650.1 HAVANA gene 1165 18988 . + . FI_gene_label "ANKRD42^ENSG00000137494.14" ; ID "ANKRD42--AC118650.1^ANKRD42^ENSG00000137494.14" ; ccdsid "CCDS76457.1" ; exon_id "ENSE00001733368.1" ; exon_number 1 ; gene_id "ANKRD42--AC118650.1^ANKRD42^ENSG00000137494.14" ; gene_name ANKRD42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167075.2" ; havana_transcript "OTTHUMT00000392931.1" ; hgnc_id "HGNC:26752" ; level 2 ; orig_coord_info "chr11,83194671,83194728,+" ; protein_id "ENSP00000260047.6" ; tag basic appris_principal_4 CCDS ; transcript_id "ANKRD42--AC118650.1^ENST00000260047.10" ; transcript_name "ANKRD42-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANKRD42--AC118650.1 HAVANA mRNA 1165 18988 . + . FI_gene_label "ANKRD42^ENSG00000137494.14" ; ID "ANKRD42--AC118650.1^ENST00000260047.10" ; Parent "ANKRD42--AC118650.1^ANKRD42^ENSG00000137494.14" ; ccdsid "CCDS76457.1" ; exon_id "ENSE00001733368.1" ; exon_number 1 ; gene_id "ANKRD42--AC118650.1^ANKRD42^ENSG00000137494.14" ; gene_name ANKRD42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167075.2" ; havana_transcript "OTTHUMT00000392931.1" ; hgnc_id "HGNC:26752" ; level 2 ; orig_coord_info "chr11,83194671,83194728,+" ; protein_id "ENSP00000260047.6" ; tag basic appris_principal_4 CCDS ; transcript_id "ANKRD42--AC118650.1^ENST00000260047.10" ; transcript_name "ANKRD42-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKRD42--AC139365.1 HAVANA gene 1165 18988 . + . FI_gene_label "ANKRD42^ENSG00000137494.14" ; ID "ANKRD42--AC139365.1^ANKRD42^ENSG00000137494.14" ; ccdsid "CCDS76457.1" ; exon_id "ENSE00001733368.1" ; exon_number 1 ; gene_id "ANKRD42--AC139365.1^ANKRD42^ENSG00000137494.14" ; gene_name ANKRD42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167075.2" ; havana_transcript "OTTHUMT00000392931.1" ; hgnc_id "HGNC:26752" ; level 2 ; orig_coord_info "chr11,83194671,83194728,+" ; protein_id "ENSP00000260047.6" ; tag basic appris_principal_4 CCDS ; transcript_id "ANKRD42--AC139365.1^ENST00000260047.10" ; transcript_name "ANKRD42-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANKRD42--AC139365.1 HAVANA mRNA 1165 18988 . + . FI_gene_label "ANKRD42^ENSG00000137494.14" ; ID "ANKRD42--AC139365.1^ENST00000260047.10" ; Parent "ANKRD42--AC139365.1^ANKRD42^ENSG00000137494.14" ; ccdsid "CCDS76457.1" ; exon_id "ENSE00001733368.1" ; exon_number 1 ; gene_id "ANKRD42--AC139365.1^ANKRD42^ENSG00000137494.14" ; gene_name ANKRD42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167075.2" ; havana_transcript "OTTHUMT00000392931.1" ; hgnc_id "HGNC:26752" ; level 2 ; orig_coord_info "chr11,83194671,83194728,+" ; protein_id "ENSP00000260047.6" ; tag basic appris_principal_4 CCDS ; transcript_id "ANKRD42--AC139365.1^ENST00000260047.10" ; transcript_name "ANKRD42-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AP000487.1--ADGRA2 HAVANA gene 11117 28383 . + . FI_gene_label "ADGRA2^ENSG00000020181.18" ; ID "AP000487.1--ADGRA2^ADGRA2^ENSG00000020181.18" ; exon_id "ENSE00001666511.1" ; exon_number 1 ; gene_id "AP000487.1--ADGRA2^ADGRA2^ENSG00000020181.18" ; gene_name ADGRA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156182.6" ; havana_transcript "OTTHUMT00000343332.3" ; hgnc_id "HGNC:17849" ; level 2 ; orig_coord_info "chr8,37797269,37797534,+" ; protein_id "ENSP00000323508.7" ; tag basic ; transcript_id "AP000487.1--ADGRA2^ENST00000315215.11" ; transcript_name "ADGRA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AP000487.1--ADGRA2 HAVANA mRNA 11117 28383 . + . FI_gene_label "ADGRA2^ENSG00000020181.18" ; ID "AP000487.1--ADGRA2^ENST00000315215.11" ; Parent "AP000487.1--ADGRA2^ADGRA2^ENSG00000020181.18" ; exon_id "ENSE00001666511.1" ; exon_number 1 ; gene_id "AP000487.1--ADGRA2^ADGRA2^ENSG00000020181.18" ; gene_name ADGRA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156182.6" ; havana_transcript "OTTHUMT00000343332.3" ; hgnc_id "HGNC:17849" ; level 2 ; orig_coord_info "chr8,37797269,37797534,+" ; protein_id "ENSP00000323508.7" ; tag basic ; transcript_id "AP000487.1--ADGRA2^ENST00000315215.11" ; transcript_name "ADGRA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLPTM1L--TERT HAVANA gene 21914 41347 . + . FI_gene_label "TERT^ENSG00000164362.21" ; ID "CLPTM1L--TERT^TERT^ENSG00000164362.21" ; ccdsid "CCDS3861.2" ; exon_id "ENSE00003896691.1" ; exon_number 1 ; gene_id "CLPTM1L--TERT^TERT^ENSG00000164362.21" ; gene_name TERT ; gene_type protein_coding ; havana_gene "OTTHUMG00000090357.9" ; havana_transcript "OTTHUMT00000206729.4" ; hgnc_id "HGNC:11730" ; level 2 ; orig_coord_info "chr5,1294771,1294989,-" ; protein_id "ENSP00000309572.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CLPTM1L--TERT^ENST00000310581.10" ; transcript_name "TERT-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLPTM1L--TERT HAVANA mRNA 21914 41347 . + . FI_gene_label "TERT^ENSG00000164362.21" ; ID "CLPTM1L--TERT^ENST00000310581.10" ; Parent "CLPTM1L--TERT^TERT^ENSG00000164362.21" ; ccdsid "CCDS3861.2" ; exon_id "ENSE00003896691.1" ; exon_number 1 ; gene_id "CLPTM1L--TERT^TERT^ENSG00000164362.21" ; gene_name TERT ; gene_type protein_coding ; havana_gene "OTTHUMG00000090357.9" ; havana_transcript "OTTHUMT00000206729.4" ; hgnc_id "HGNC:11730" ; level 2 ; orig_coord_info "chr5,1294771,1294989,-" ; protein_id "ENSP00000309572.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CLPTM1L--TERT^ENST00000310581.10" ; transcript_name "TERT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLPTM1L--TERT HAVANA gene 1001 18913 . + . FI_gene_label "CLPTM1L^ENSG00000049656.14" ; ID "CLPTM1L--TERT^CLPTM1L^ENSG00000049656.14" ; ccdsid "CCDS3862.1" ; exon_id "ENSE00001830316.1" ; exon_number 1 ; gene_id "CLPTM1L--TERT^CLPTM1L^ENSG00000049656.14" ; gene_name CLPTM1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000131015.5" ; havana_transcript "OTTHUMT00000253649.3" ; hgnc_id "HGNC:24308" ; level 2 ; orig_coord_info "chr5,1344680,1344841,-" ; protein_id "ENSP00000313854.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLPTM1L--TERT^ENST00000320895.10" ; transcript_name "CLPTM1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLPTM1L--TERT HAVANA mRNA 1001 18913 . + . FI_gene_label "CLPTM1L^ENSG00000049656.14" ; ID "CLPTM1L--TERT^ENST00000320895.10" ; Parent "CLPTM1L--TERT^CLPTM1L^ENSG00000049656.14" ; ccdsid "CCDS3862.1" ; exon_id "ENSE00001830316.1" ; exon_number 1 ; gene_id "CLPTM1L--TERT^CLPTM1L^ENSG00000049656.14" ; gene_name CLPTM1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000131015.5" ; havana_transcript "OTTHUMT00000253649.3" ; hgnc_id "HGNC:24308" ; level 2 ; orig_coord_info "chr5,1344680,1344841,-" ; protein_id "ENSP00000313854.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLPTM1L--TERT^ENST00000320895.10" ; transcript_name "CLPTM1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CPT1A--FBXO25 HAVANA gene 2282 28747 . + . FI_gene_label "CPT1A^ENSG00000110090.13" ; ID "CPT1A--FBXO25^CPT1A^ENSG00000110090.13" ; ccdsid "CCDS8185.1" ; exon_id "ENSE00001200549.2" ; exon_number 2 ; gene_id "CPT1A--FBXO25^CPT1A^ENSG00000110090.13" ; gene_name CPT1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167892.6" ; havana_transcript "OTTHUMT00000397457.3" ; hgnc_id "HGNC:2328" ; level 2 ; orig_coord_info "chr11,68815334,68815474,-" ; protein_id "ENSP00000265641.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPT1A--FBXO25^ENST00000265641.10" ; transcript_name "CPT1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
CPT1A--FBXO25 HAVANA mRNA 2282 28747 . + . FI_gene_label "CPT1A^ENSG00000110090.13" ; ID "CPT1A--FBXO25^ENST00000265641.10" ; Parent "CPT1A--FBXO25^CPT1A^ENSG00000110090.13" ; ccdsid "CCDS8185.1" ; exon_id "ENSE00001200549.2" ; exon_number 2 ; gene_id "CPT1A--FBXO25^CPT1A^ENSG00000110090.13" ; gene_name CPT1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167892.6" ; havana_transcript "OTTHUMT00000397457.3" ; hgnc_id "HGNC:2328" ; level 2 ; orig_coord_info "chr11,68815334,68815474,-" ; protein_id "ENSP00000265641.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPT1A--FBXO25^ENST00000265641.10" ; transcript_name "CPT1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CPT1A--FBXO25 HAVANA gene 33650 46017 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "CPT1A--FBXO25^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "CPT1A--FBXO25^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "CPT1A--FBXO25^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
CPT1A--FBXO25 HAVANA mRNA 33650 46017 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "CPT1A--FBXO25^ENST00000276326.9" ; Parent "CPT1A--FBXO25^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "CPT1A--FBXO25^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "CPT1A--FBXO25^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CST9--CST9L HAVANA gene 1001 3633 . + . FI_gene_label "CST9^ENSG00000173335.5" ; ID "CST9--CST9L^CST9^ENSG00000173335.5" ; ccdsid "CCDS33450.1" ; exon_id "ENSE00001472300.2" ; exon_number 1 ; gene_id "CST9--CST9L^CST9^ENSG00000173335.5" ; gene_name CST9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032076.1" ; havana_transcript "OTTHUMT00000078341.1" ; hgnc_id "HGNC:13261" ; level 2 ; orig_coord_info "chr20,23605610,23605864,-" ; protein_id "ENSP00000366170.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CST9--CST9L^ENST00000376971.4" ; transcript_name "CST9-201" ; transcript_support_level 1 ; transcript_type protein_coding
CST9--CST9L HAVANA mRNA 1001 3633 . + . FI_gene_label "CST9^ENSG00000173335.5" ; ID "CST9--CST9L^ENST00000376971.4" ; Parent "CST9--CST9L^CST9^ENSG00000173335.5" ; ccdsid "CCDS33450.1" ; exon_id "ENSE00001472300.2" ; exon_number 1 ; gene_id "CST9--CST9L^CST9^ENSG00000173335.5" ; gene_name CST9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032076.1" ; havana_transcript "OTTHUMT00000078341.1" ; hgnc_id "HGNC:13261" ; level 2 ; orig_coord_info "chr20,23605610,23605864,-" ; protein_id "ENSP00000366170.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CST9--CST9L^ENST00000376971.4" ; transcript_name "CST9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CST9--CST9L HAVANA gene 6634 9263 . + . FI_gene_label "CST9L^ENSG00000101435.5" ; ID "CST9--CST9L^CST9L^ENSG00000101435.5" ; ccdsid "CCDS13157.1" ; exon_id "ENSE00001472328.2" ; exon_number 1 ; gene_id "CST9--CST9L^CST9L^ENSG00000101435.5" ; gene_name CST9L ; gene_type protein_coding ; havana_gene "OTTHUMG00000032073.2" ; havana_transcript "OTTHUMT00000078338.2" ; hgnc_id "HGNC:16233" ; level 2 ; orig_coord_info "chr20,23568211,23568450,-" ; protein_id "ENSP00000366178.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CST9--CST9L^ENST00000376979.4" ; transcript_name "CST9L-201" ; transcript_support_level 1 ; transcript_type protein_coding
CST9--CST9L HAVANA mRNA 6634 9263 . + . FI_gene_label "CST9L^ENSG00000101435.5" ; ID "CST9--CST9L^ENST00000376979.4" ; Parent "CST9--CST9L^CST9L^ENSG00000101435.5" ; ccdsid "CCDS13157.1" ; exon_id "ENSE00001472328.2" ; exon_number 1 ; gene_id "CST9--CST9L^CST9L^ENSG00000101435.5" ; gene_name CST9L ; gene_type protein_coding ; havana_gene "OTTHUMG00000032073.2" ; havana_transcript "OTTHUMT00000078338.2" ; hgnc_id "HGNC:16233" ; level 2 ; orig_coord_info "chr20,23568211,23568450,-" ; protein_id "ENSP00000366178.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CST9--CST9L^ENST00000376979.4" ; transcript_name "CST9L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CTTN--DLG2 HAVANA gene 43160 85477 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "CTTN--DLG2^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "CTTN--DLG2^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "CTTN--DLG2^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
CTTN--DLG2 HAVANA mRNA 43160 85477 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "CTTN--DLG2^ENST00000280241.12" ; Parent "CTTN--DLG2^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "CTTN--DLG2^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "CTTN--DLG2^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CTTN--DLG2 HAVANA gene 1126 21252 . + . FI_gene_label "CTTN^ENSG00000085733.16" ; ID "CTTN--DLG2^CTTN^ENSG00000085733.16" ; ccdsid "CCDS41680.1" ; exon_id "ENSE00003684603.1" ; exon_number 3 ; gene_id "CTTN--DLG2^CTTN^ENSG00000085733.16" ; gene_name CTTN ; gene_type protein_coding ; havana_gene "OTTHUMG00000134307.4" ; havana_transcript "OTTHUMT00000259233.3" ; hgnc_id "HGNC:3338" ; level 2 ; orig_coord_info "chr11,70407298,70407384,+" ; protein_id "ENSP00000301843.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CTTN--DLG2^ENST00000301843.13" ; transcript_name "CTTN-201" ; transcript_support_level 1 ; transcript_type protein_coding
CTTN--DLG2 HAVANA mRNA 1126 21252 . + . FI_gene_label "CTTN^ENSG00000085733.16" ; ID "CTTN--DLG2^ENST00000301843.13" ; Parent "CTTN--DLG2^CTTN^ENSG00000085733.16" ; ccdsid "CCDS41680.1" ; exon_id "ENSE00003684603.1" ; exon_number 3 ; gene_id "CTTN--DLG2^CTTN^ENSG00000085733.16" ; gene_name CTTN ; gene_type protein_coding ; havana_gene "OTTHUMG00000134307.4" ; havana_transcript "OTTHUMT00000259233.3" ; hgnc_id "HGNC:3338" ; level 2 ; orig_coord_info "chr11,70407298,70407384,+" ; protein_id "ENSP00000301843.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CTTN--DLG2^ENST00000301843.13" ; transcript_name "CTTN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CYP7B1--ADAM32 HAVANA gene 1001 12920 . + . FI_gene_label "CYP7B1^ENSG00000172817.4" ; ID "CYP7B1--ADAM32^CYP7B1^ENSG00000172817.4" ; ccdsid "CCDS6180.1" ; exon_id "ENSE00001242915.3" ; exon_number 1 ; gene_id "CYP7B1--ADAM32^CYP7B1^ENSG00000172817.4" ; gene_name CYP7B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164387.3" ; havana_transcript "OTTHUMT00000378550.2" ; hgnc_id "HGNC:2652" ; level 2 ; orig_coord_info "chr8,64798466,64798587,-" ; protein_id "ENSP00000310721.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYP7B1--ADAM32^ENST00000310193.4" ; transcript_name "CYP7B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CYP7B1--ADAM32 HAVANA mRNA 1001 12920 . + . FI_gene_label "CYP7B1^ENSG00000172817.4" ; ID "CYP7B1--ADAM32^ENST00000310193.4" ; Parent "CYP7B1--ADAM32^CYP7B1^ENSG00000172817.4" ; ccdsid "CCDS6180.1" ; exon_id "ENSE00001242915.3" ; exon_number 1 ; gene_id "CYP7B1--ADAM32^CYP7B1^ENSG00000172817.4" ; gene_name CYP7B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164387.3" ; havana_transcript "OTTHUMT00000378550.2" ; hgnc_id "HGNC:2652" ; level 2 ; orig_coord_info "chr8,64798466,64798587,-" ; protein_id "ENSP00000310721.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYP7B1--ADAM32^ENST00000310193.4" ; transcript_name "CYP7B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CYP7B1--ADAM32 HAVANA gene 18745 51695 . + . FI_gene_label "ADAM32^ENSG00000197140.15" ; ID "CYP7B1--ADAM32^ADAM32^ENSG00000197140.15" ; ccdsid "CCDS47846.1" ; exon_id "ENSE00002129166.2" ; exon_number 1 ; gene_id "CYP7B1--ADAM32^ADAM32^ENSG00000197140.15" ; gene_name ADAM32 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164071.6" ; havana_transcript "OTTHUMT00000377089.2" ; hgnc_id "HGNC:15479" ; level 2 ; orig_coord_info "chr8,39107776,39107833,+" ; protein_id "ENSP00000369238.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYP7B1--ADAM32^ENST00000379907.9" ; transcript_name "ADAM32-201" ; transcript_support_level 1 ; transcript_type protein_coding
CYP7B1--ADAM32 HAVANA mRNA 18745 51695 . + . FI_gene_label "ADAM32^ENSG00000197140.15" ; ID "CYP7B1--ADAM32^ENST00000379907.9" ; Parent "CYP7B1--ADAM32^ADAM32^ENSG00000197140.15" ; ccdsid "CCDS47846.1" ; exon_id "ENSE00002129166.2" ; exon_number 1 ; gene_id "CYP7B1--ADAM32^ADAM32^ENSG00000197140.15" ; gene_name ADAM32 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164071.6" ; havana_transcript "OTTHUMT00000377089.2" ; hgnc_id "HGNC:15479" ; level 2 ; orig_coord_info "chr8,39107776,39107833,+" ; protein_id "ENSP00000369238.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYP7B1--ADAM32^ENST00000379907.9" ; transcript_name "ADAM32-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DLG2--AC091182.1 HAVANA gene 19899 62216 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "DLG2--AC091182.1^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "DLG2--AC091182.1^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "DLG2--AC091182.1^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
DLG2--AC091182.1 HAVANA mRNA 19899 62216 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "DLG2--AC091182.1^ENST00000280241.12" ; Parent "DLG2--AC091182.1^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "DLG2--AC091182.1^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "DLG2--AC091182.1^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DLG2--AC091182.2 HAVANA gene 19899 62216 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "DLG2--AC091182.2^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "DLG2--AC091182.2^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "DLG2--AC091182.2^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
DLG2--AC091182.2 HAVANA mRNA 19899 62216 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "DLG2--AC091182.2^ENST00000280241.12" ; Parent "DLG2--AC091182.2^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "DLG2--AC091182.2^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "DLG2--AC091182.2^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DLGAP2--ANKRD42 HAVANA gene 46207 64030 . + . FI_gene_label "ANKRD42^ENSG00000137494.14" ; ID "DLGAP2--ANKRD42^ANKRD42^ENSG00000137494.14" ; ccdsid "CCDS76457.1" ; exon_id "ENSE00001733368.1" ; exon_number 1 ; gene_id "DLGAP2--ANKRD42^ANKRD42^ENSG00000137494.14" ; gene_name ANKRD42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167075.2" ; havana_transcript "OTTHUMT00000392931.1" ; hgnc_id "HGNC:26752" ; level 2 ; orig_coord_info "chr11,83194671,83194728,+" ; protein_id "ENSP00000260047.6" ; tag basic appris_principal_4 CCDS ; transcript_id "DLGAP2--ANKRD42^ENST00000260047.10" ; transcript_name "ANKRD42-201" ; transcript_support_level 1 ; transcript_type protein_coding
DLGAP2--ANKRD42 HAVANA mRNA 46207 64030 . + . FI_gene_label "ANKRD42^ENSG00000137494.14" ; ID "DLGAP2--ANKRD42^ENST00000260047.10" ; Parent "DLGAP2--ANKRD42^ANKRD42^ENSG00000137494.14" ; ccdsid "CCDS76457.1" ; exon_id "ENSE00001733368.1" ; exon_number 1 ; gene_id "DLGAP2--ANKRD42^ANKRD42^ENSG00000137494.14" ; gene_name ANKRD42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167075.2" ; havana_transcript "OTTHUMT00000392931.1" ; hgnc_id "HGNC:26752" ; level 2 ; orig_coord_info "chr11,83194671,83194728,+" ; protein_id "ENSP00000260047.6" ; tag basic appris_principal_4 CCDS ; transcript_id "DLGAP2--ANKRD42^ENST00000260047.10" ; transcript_name "ANKRD42-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DLGAP2--ANKRD42 HAVANA gene 4089 35972 . + . FI_gene_label "DLGAP2^ENSG00000198010.13" ; ID "DLGAP2--ANKRD42^DLGAP2^ENSG00000198010.13" ; exon_id "ENSE00003796184.1" ; exon_number 1 ; gene_id "DLGAP2--ANKRD42^DLGAP2^ENSG00000198010.13" ; gene_name DLGAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163599.5" ; havana_transcript "OTTHUMT00000489963.1" ; hgnc_id "HGNC:2906" ; level 2 ; orig_coord_info "chr8,822179,822193,+" ; protein_id "ENSP00000400258.3" ; tag inferred_transcript_model basic appris_alternative_2 ; transcript_id "DLGAP2--ANKRD42^ENST00000421627.7" ; transcript_name "DLGAP2-201" ; transcript_support_level 5 ; transcript_type protein_coding
DLGAP2--ANKRD42 HAVANA mRNA 4089 35972 . + . FI_gene_label "DLGAP2^ENSG00000198010.13" ; ID "DLGAP2--ANKRD42^ENST00000421627.7" ; Parent "DLGAP2--ANKRD42^DLGAP2^ENSG00000198010.13" ; exon_id "ENSE00003796184.1" ; exon_number 1 ; gene_id "DLGAP2--ANKRD42^DLGAP2^ENSG00000198010.13" ; gene_name DLGAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163599.5" ; havana_transcript "OTTHUMT00000489963.1" ; hgnc_id "HGNC:2906" ; level 2 ; orig_coord_info "chr8,822179,822193,+" ; protein_id "ENSP00000400258.3" ; tag inferred_transcript_model basic appris_alternative_2 ; transcript_id "DLGAP2--ANKRD42^ENST00000421627.7" ; transcript_name "DLGAP2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
FBXO25--DLGAP2 HAVANA gene 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--DLGAP2^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--DLGAP2^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--DLGAP2^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXO25--DLGAP2 HAVANA mRNA 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--DLGAP2^ENST00000276326.9" ; Parent "FBXO25--DLGAP2^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--DLGAP2^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--DLGAP2^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXO25--DLGAP2 HAVANA gene 29190 61073 . + . FI_gene_label "DLGAP2^ENSG00000198010.13" ; ID "FBXO25--DLGAP2^DLGAP2^ENSG00000198010.13" ; exon_id "ENSE00003796184.1" ; exon_number 1 ; gene_id "FBXO25--DLGAP2^DLGAP2^ENSG00000198010.13" ; gene_name DLGAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163599.5" ; havana_transcript "OTTHUMT00000489963.1" ; hgnc_id "HGNC:2906" ; level 2 ; orig_coord_info "chr8,822179,822193,+" ; protein_id "ENSP00000400258.3" ; tag inferred_transcript_model basic appris_alternative_2 ; transcript_id "FBXO25--DLGAP2^ENST00000421627.7" ; transcript_name "DLGAP2-201" ; transcript_support_level 5 ; transcript_type protein_coding
FBXO25--DLGAP2 HAVANA mRNA 29190 61073 . + . FI_gene_label "DLGAP2^ENSG00000198010.13" ; ID "FBXO25--DLGAP2^ENST00000421627.7" ; Parent "FBXO25--DLGAP2^DLGAP2^ENSG00000198010.13" ; exon_id "ENSE00003796184.1" ; exon_number 1 ; gene_id "FBXO25--DLGAP2^DLGAP2^ENSG00000198010.13" ; gene_name DLGAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163599.5" ; havana_transcript "OTTHUMT00000489963.1" ; hgnc_id "HGNC:2906" ; level 2 ; orig_coord_info "chr8,822179,822193,+" ; protein_id "ENSP00000400258.3" ; tag inferred_transcript_model basic appris_alternative_2 ; transcript_id "FBXO25--DLGAP2^ENST00000421627.7" ; transcript_name "DLGAP2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FSIP1--AC013652.1 HAVANA mRNA 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^ENST00000350221.4" ; Parent "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KAT6A--AC010857.1 HAVANA gene 1008 38830 . + . FI_gene_label "KAT6A^ENSG00000083168.11" ; ID "KAT6A--AC010857.1^KAT6A^ENSG00000083168.11" ; ccdsid "CCDS6124.1" ; exon_id "ENSE00002107560.1" ; exon_number 2 ; gene_id "KAT6A--AC010857.1^KAT6A^ENSG00000083168.11" ; gene_name KAT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150453.6" ; havana_transcript "OTTHUMT00000318160.3" ; hgnc_id "HGNC:13013" ; level 2 ; orig_coord_info "chr8,42048378,42048977,-" ; protein_id "ENSP00000265713.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KAT6A--AC010857.1^ENST00000265713.8" ; transcript_name "KAT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KAT6A--AC010857.1 HAVANA mRNA 1008 38830 . + . FI_gene_label "KAT6A^ENSG00000083168.11" ; ID "KAT6A--AC010857.1^ENST00000265713.8" ; Parent "KAT6A--AC010857.1^KAT6A^ENSG00000083168.11" ; ccdsid "CCDS6124.1" ; exon_id "ENSE00002107560.1" ; exon_number 2 ; gene_id "KAT6A--AC010857.1^KAT6A^ENSG00000083168.11" ; gene_name KAT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150453.6" ; havana_transcript "OTTHUMT00000318160.3" ; hgnc_id "HGNC:13013" ; level 2 ; orig_coord_info "chr8,42048378,42048977,-" ; protein_id "ENSP00000265713.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KAT6A--AC010857.1^ENST00000265713.8" ; transcript_name "KAT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KAT6A--AC105999.1 HAVANA gene 1008 38830 . + . FI_gene_label "KAT6A^ENSG00000083168.11" ; ID "KAT6A--AC105999.1^KAT6A^ENSG00000083168.11" ; ccdsid "CCDS6124.1" ; exon_id "ENSE00002107560.1" ; exon_number 2 ; gene_id "KAT6A--AC105999.1^KAT6A^ENSG00000083168.11" ; gene_name KAT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150453.6" ; havana_transcript "OTTHUMT00000318160.3" ; hgnc_id "HGNC:13013" ; level 2 ; orig_coord_info "chr8,42048378,42048977,-" ; protein_id "ENSP00000265713.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KAT6A--AC105999.1^ENST00000265713.8" ; transcript_name "KAT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KAT6A--AC105999.1 HAVANA mRNA 1008 38830 . + . FI_gene_label "KAT6A^ENSG00000083168.11" ; ID "KAT6A--AC105999.1^ENST00000265713.8" ; Parent "KAT6A--AC105999.1^KAT6A^ENSG00000083168.11" ; ccdsid "CCDS6124.1" ; exon_id "ENSE00002107560.1" ; exon_number 2 ; gene_id "KAT6A--AC105999.1^KAT6A^ENSG00000083168.11" ; gene_name KAT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150453.6" ; havana_transcript "OTTHUMT00000318160.3" ; hgnc_id "HGNC:13013" ; level 2 ; orig_coord_info "chr8,42048378,42048977,-" ; protein_id "ENSP00000265713.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KAT6A--AC105999.1^ENST00000265713.8" ; transcript_name "KAT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KAT6A--SIRLNT HAVANA gene 1008 38830 . + . FI_gene_label "KAT6A^ENSG00000083168.11" ; ID "KAT6A--SIRLNT^KAT6A^ENSG00000083168.11" ; ccdsid "CCDS6124.1" ; exon_id "ENSE00002107560.1" ; exon_number 2 ; gene_id "KAT6A--SIRLNT^KAT6A^ENSG00000083168.11" ; gene_name KAT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150453.6" ; havana_transcript "OTTHUMT00000318160.3" ; hgnc_id "HGNC:13013" ; level 2 ; orig_coord_info "chr8,42048378,42048977,-" ; protein_id "ENSP00000265713.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KAT6A--SIRLNT^ENST00000265713.8" ; transcript_name "KAT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KAT6A--SIRLNT HAVANA mRNA 1008 38830 . + . FI_gene_label "KAT6A^ENSG00000083168.11" ; ID "KAT6A--SIRLNT^ENST00000265713.8" ; Parent "KAT6A--SIRLNT^KAT6A^ENSG00000083168.11" ; ccdsid "CCDS6124.1" ; exon_id "ENSE00002107560.1" ; exon_number 2 ; gene_id "KAT6A--SIRLNT^KAT6A^ENSG00000083168.11" ; gene_name KAT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150453.6" ; havana_transcript "OTTHUMT00000318160.3" ; hgnc_id "HGNC:13013" ; level 2 ; orig_coord_info "chr8,42048378,42048977,-" ; protein_id "ENSP00000265713.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KAT6A--SIRLNT^ENST00000265713.8" ; transcript_name "KAT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--FBXO25 HAVANA gene 35473 47840 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "LRP5--FBXO25^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "LRP5--FBXO25^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "LRP5--FBXO25^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--FBXO25 HAVANA mRNA 35473 47840 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "LRP5--FBXO25^ENST00000276326.9" ; Parent "LRP5--FBXO25^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "LRP5--FBXO25^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "LRP5--FBXO25^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--FBXO25 HAVANA gene 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--FBXO25^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--FBXO25^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--FBXO25^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--FBXO25 HAVANA mRNA 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--FBXO25^ENST00000294304.12" ; Parent "LRP5--FBXO25^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--FBXO25^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--FBXO25^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LSM1--ADAM2 HAVANA gene 9691 31373 . + . FI_gene_label "ADAM2^ENSG00000104755.15" ; ID "LSM1--ADAM2^ADAM2^ENSG00000104755.15" ; ccdsid "CCDS34884.1" ; exon_id "ENSE00002122139.1" ; exon_number 1 ; gene_id "LSM1--ADAM2^ADAM2^ENSG00000104755.15" ; gene_name ADAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164041.4" ; havana_transcript "OTTHUMT00000376926.2" ; hgnc_id "HGNC:198" ; level 2 ; orig_coord_info "chr8,39838131,39838185,-" ; protein_id "ENSP00000265708.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM1--ADAM2^ENST00000265708.9" ; transcript_name "ADAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LSM1--ADAM2 HAVANA mRNA 9691 31373 . + . FI_gene_label "ADAM2^ENSG00000104755.15" ; ID "LSM1--ADAM2^ENST00000265708.9" ; Parent "LSM1--ADAM2^ADAM2^ENSG00000104755.15" ; ccdsid "CCDS34884.1" ; exon_id "ENSE00002122139.1" ; exon_number 1 ; gene_id "LSM1--ADAM2^ADAM2^ENSG00000104755.15" ; gene_name ADAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164041.4" ; havana_transcript "OTTHUMT00000376926.2" ; hgnc_id "HGNC:198" ; level 2 ; orig_coord_info "chr8,39838131,39838185,-" ; protein_id "ENSP00000265708.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM1--ADAM2^ENST00000265708.9" ; transcript_name "ADAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LSM1--ADAM2 HAVANA gene 1238 6624 . + . FI_gene_label "LSM1^ENSG00000175324.10" ; ID "LSM1--ADAM2^LSM1^ENSG00000175324.10" ; ccdsid "CCDS6103.1" ; exon_id "ENSE00002099181.2" ; exon_number 1 ; gene_id "LSM1--ADAM2^LSM1^ENSG00000175324.10" ; gene_name LSM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164051.2" ; havana_transcript "OTTHUMT00000376965.2" ; hgnc_id "HGNC:20472" ; level 2 ; orig_coord_info "chr8,38176275,38176320,-" ; protein_id "ENSP00000310596.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM1--ADAM2^ENST00000311351.9" ; transcript_name "LSM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LSM1--ADAM2 HAVANA mRNA 1238 6624 . + . FI_gene_label "LSM1^ENSG00000175324.10" ; ID "LSM1--ADAM2^ENST00000311351.9" ; Parent "LSM1--ADAM2^LSM1^ENSG00000175324.10" ; ccdsid "CCDS6103.1" ; exon_id "ENSE00002099181.2" ; exon_number 1 ; gene_id "LSM1--ADAM2^LSM1^ENSG00000175324.10" ; gene_name LSM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164051.2" ; havana_transcript "OTTHUMT00000376965.2" ; hgnc_id "HGNC:20472" ; level 2 ; orig_coord_info "chr8,38176275,38176320,-" ; protein_id "ENSP00000310596.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM1--ADAM2^ENST00000311351.9" ; transcript_name "LSM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MIR4457--TERT HAVANA gene 4069 23502 . + . FI_gene_label "TERT^ENSG00000164362.21" ; ID "MIR4457--TERT^TERT^ENSG00000164362.21" ; ccdsid "CCDS3861.2" ; exon_id "ENSE00003896691.1" ; exon_number 1 ; gene_id "MIR4457--TERT^TERT^ENSG00000164362.21" ; gene_name TERT ; gene_type protein_coding ; havana_gene "OTTHUMG00000090357.9" ; havana_transcript "OTTHUMT00000206729.4" ; hgnc_id "HGNC:11730" ; level 2 ; orig_coord_info "chr5,1294771,1294989,-" ; protein_id "ENSP00000309572.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4457--TERT^ENST00000310581.10" ; transcript_name "TERT-201" ; transcript_support_level 1 ; transcript_type protein_coding
MIR4457--TERT HAVANA mRNA 4069 23502 . + . FI_gene_label "TERT^ENSG00000164362.21" ; ID "MIR4457--TERT^ENST00000310581.10" ; Parent "MIR4457--TERT^TERT^ENSG00000164362.21" ; ccdsid "CCDS3861.2" ; exon_id "ENSE00003896691.1" ; exon_number 1 ; gene_id "MIR4457--TERT^TERT^ENSG00000164362.21" ; gene_name TERT ; gene_type protein_coding ; havana_gene "OTTHUMG00000090357.9" ; havana_transcript "OTTHUMT00000206729.4" ; hgnc_id "HGNC:11730" ; level 2 ; orig_coord_info "chr5,1294771,1294989,-" ; protein_id "ENSP00000309572.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4457--TERT^ENST00000310581.10" ; transcript_name "TERT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PLEKHA2--ANK1 HAVANA gene 21316 68273 . + . FI_gene_label "ANK1^ENSG00000029534.21" ; ID "PLEKHA2--ANK1^ANK1^ENSG00000029534.21" ; ccdsid "CCDS47849.1" ; exon_id "ENSE00001482383.3" ; exon_number 1 ; gene_id "PLEKHA2--ANK1^ANK1^ENSG00000029534.21" ; gene_name ANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150281.8" ; havana_transcript "OTTHUMT00000377171.2" ; hgnc_id "HGNC:492" ; level 2 ; orig_coord_info "chr8,41896355,41896480,-" ; protein_id "ENSP00000265709.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "PLEKHA2--ANK1^ENST00000265709.13" ; transcript_name "ANK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLEKHA2--ANK1 HAVANA mRNA 21316 68273 . + . FI_gene_label "ANK1^ENSG00000029534.21" ; ID "PLEKHA2--ANK1^ENST00000265709.13" ; Parent "PLEKHA2--ANK1^ANK1^ENSG00000029534.21" ; ccdsid "CCDS47849.1" ; exon_id "ENSE00001482383.3" ; exon_number 1 ; gene_id "PLEKHA2--ANK1^ANK1^ENSG00000029534.21" ; gene_name ANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150281.8" ; havana_transcript "OTTHUMT00000377171.2" ; hgnc_id "HGNC:492" ; level 2 ; orig_coord_info "chr8,41896355,41896480,-" ; protein_id "ENSP00000265709.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "PLEKHA2--ANK1^ENST00000265709.13" ; transcript_name "ANK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLEKHA2--ANK1 HAVANA gene 1110 6203 . + . FI_gene_label "PLEKHA2^ENSG00000169499.15" ; ID "PLEKHA2--ANK1^PLEKHA2^ENSG00000169499.15" ; exon_id "ENSE00003592062.1" ; exon_number 3 ; gene_id "PLEKHA2--ANK1^PLEKHA2^ENSG00000169499.15" ; gene_name PLEKHA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164069.9" ; havana_transcript "OTTHUMT00000377071.1" ; hgnc_id "HGNC:14336" ; level 2 ; orig_coord_info "chr8,38917930,38918070,+" ; protein_id "ENSP00000429956.1" ; tag alternative_5_UTR dotter_confirmed mRNA_end_NF cds_end_NF ; transcript_id "PLEKHA2--ANK1^ENST00000519640.5" ; transcript_name "PLEKHA2-203" ; transcript_support_level 5 ; transcript_type protein_coding
PLEKHA2--ANK1 HAVANA mRNA 1110 6203 . + . FI_gene_label "PLEKHA2^ENSG00000169499.15" ; ID "PLEKHA2--ANK1^ENST00000519640.5" ; Parent "PLEKHA2--ANK1^PLEKHA2^ENSG00000169499.15" ; exon_id "ENSE00003592062.1" ; exon_number 3 ; gene_id "PLEKHA2--ANK1^PLEKHA2^ENSG00000169499.15" ; gene_name PLEKHA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164069.9" ; havana_transcript "OTTHUMT00000377071.1" ; hgnc_id "HGNC:14336" ; level 2 ; orig_coord_info "chr8,38917930,38918070,+" ; protein_id "ENSP00000429956.1" ; tag alternative_5_UTR dotter_confirmed mRNA_end_NF cds_end_NF ; transcript_id "PLEKHA2--ANK1^ENST00000519640.5" ; transcript_name "PLEKHA2-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PLPBP--ASH2L HAVANA gene 1051 9396 . + . FI_gene_label "PLPBP^ENSG00000147471.12" ; ID "PLPBP--ASH2L^PLPBP^ENSG00000147471.12" ; ccdsid "CCDS6096.1" ; exon_id "ENSE00002104853.2" ; exon_number 1 ; gene_id "PLPBP--ASH2L^PLPBP^ENSG00000147471.12" ; gene_name PLPBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000164024.5" ; havana_transcript "OTTHUMT00000376796.3" ; hgnc_id "HGNC:9457" ; level 2 ; orig_coord_info "chr8,37762660,37762758,+" ; protein_id "ENSP00000333551.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLPBP--ASH2L^ENST00000328195.8" ; transcript_name "PLPBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLPBP--ASH2L HAVANA mRNA 1051 9396 . + . FI_gene_label "PLPBP^ENSG00000147471.12" ; ID "PLPBP--ASH2L^ENST00000328195.8" ; Parent "PLPBP--ASH2L^PLPBP^ENSG00000147471.12" ; ccdsid "CCDS6096.1" ; exon_id "ENSE00002104853.2" ; exon_number 1 ; gene_id "PLPBP--ASH2L^PLPBP^ENSG00000147471.12" ; gene_name PLPBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000164024.5" ; havana_transcript "OTTHUMT00000376796.3" ; hgnc_id "HGNC:9457" ; level 2 ; orig_coord_info "chr8,37762660,37762758,+" ; protein_id "ENSP00000333551.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLPBP--ASH2L^ENST00000328195.8" ; transcript_name "PLPBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLPBP--ASH2L HAVANA gene 12433 29427 . + . FI_gene_label "ASH2L^ENSG00000129691.16" ; ID "PLPBP--ASH2L^ASH2L^ENSG00000129691.16" ; ccdsid "CCDS6101.1" ; exon_id "ENSE00002140042.2" ; exon_number 1 ; gene_id "PLPBP--ASH2L^ASH2L^ENSG00000129691.16" ; gene_name ASH2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000164016.8" ; havana_transcript "OTTHUMT00000376749.5" ; hgnc_id "HGNC:744" ; level 2 ; orig_coord_info "chr8,38105551,38105738,+" ; protein_id "ENSP00000340896.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PLPBP--ASH2L^ENST00000343823.11" ; transcript_name "ASH2L-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLPBP--ASH2L HAVANA mRNA 12433 29427 . + . FI_gene_label "ASH2L^ENSG00000129691.16" ; ID "PLPBP--ASH2L^ENST00000343823.11" ; Parent "PLPBP--ASH2L^ASH2L^ENSG00000129691.16" ; ccdsid "CCDS6101.1" ; exon_id "ENSE00002140042.2" ; exon_number 1 ; gene_id "PLPBP--ASH2L^ASH2L^ENSG00000129691.16" ; gene_name ASH2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000164016.8" ; havana_transcript "OTTHUMT00000376749.5" ; hgnc_id "HGNC:744" ; level 2 ; orig_coord_info "chr8,38105551,38105738,+" ; protein_id "ENSP00000340896.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PLPBP--ASH2L^ENST00000343823.11" ; transcript_name "ASH2L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLPBP--NSD3 HAVANA gene 12397 28595 . + . FI_gene_label "NSD3^ENSG00000147548.17" ; ID "PLPBP--NSD3^NSD3^ENSG00000147548.17" ; ccdsid "CCDS6105.1" ; exon_id "ENSE00002262898.1" ; exon_number 2 ; gene_id "PLPBP--NSD3^NSD3^ENSG00000147548.17" ; gene_name NSD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165115.10" ; havana_transcript "OTTHUMT00000381925.1" ; hgnc_id "HGNC:12767" ; level 2 ; orig_coord_info "chr8,38347497,38348171,-" ; protein_id "ENSP00000313410.3" ; tag basic CCDS ; transcript_id "PLPBP--NSD3^ENST00000316985.7" ; transcript_name "NSD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLPBP--NSD3 HAVANA mRNA 12397 28595 . + . FI_gene_label "NSD3^ENSG00000147548.17" ; ID "PLPBP--NSD3^ENST00000316985.7" ; Parent "PLPBP--NSD3^NSD3^ENSG00000147548.17" ; ccdsid "CCDS6105.1" ; exon_id "ENSE00002262898.1" ; exon_number 2 ; gene_id "PLPBP--NSD3^NSD3^ENSG00000147548.17" ; gene_name NSD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165115.10" ; havana_transcript "OTTHUMT00000381925.1" ; hgnc_id "HGNC:12767" ; level 2 ; orig_coord_info "chr8,38347497,38348171,-" ; protein_id "ENSP00000313410.3" ; tag basic CCDS ; transcript_id "PLPBP--NSD3^ENST00000316985.7" ; transcript_name "NSD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLPBP--NSD3 HAVANA gene 1051 9396 . + . FI_gene_label "PLPBP^ENSG00000147471.12" ; ID "PLPBP--NSD3^PLPBP^ENSG00000147471.12" ; ccdsid "CCDS6096.1" ; exon_id "ENSE00002104853.2" ; exon_number 1 ; gene_id "PLPBP--NSD3^PLPBP^ENSG00000147471.12" ; gene_name PLPBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000164024.5" ; havana_transcript "OTTHUMT00000376796.3" ; hgnc_id "HGNC:9457" ; level 2 ; orig_coord_info "chr8,37762660,37762758,+" ; protein_id "ENSP00000333551.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLPBP--NSD3^ENST00000328195.8" ; transcript_name "PLPBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLPBP--NSD3 HAVANA mRNA 1051 9396 . + . FI_gene_label "PLPBP^ENSG00000147471.12" ; ID "PLPBP--NSD3^ENST00000328195.8" ; Parent "PLPBP--NSD3^PLPBP^ENSG00000147471.12" ; ccdsid "CCDS6096.1" ; exon_id "ENSE00002104853.2" ; exon_number 1 ; gene_id "PLPBP--NSD3^PLPBP^ENSG00000147471.12" ; gene_name PLPBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000164024.5" ; havana_transcript "OTTHUMT00000376796.3" ; hgnc_id "HGNC:9457" ; level 2 ; orig_coord_info "chr8,37762660,37762758,+" ; protein_id "ENSP00000333551.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLPBP--NSD3^ENST00000328195.8" ; transcript_name "PLPBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PMS2P8--CCDC146 HAVANA gene 9073 29440 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P8--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P8--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P8--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
PMS2P8--CCDC146 HAVANA mRNA 9073 29440 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P8--CCDC146^ENST00000285871.5" ; Parent "PMS2P8--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P8--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P8--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP6R3--AP002813.1 HAVANA gene 1083 36230 . + . FI_gene_label "PPP6R3^ENSG00000110075.15" ; ID "PPP6R3--AP002813.1^PPP6R3^ENSG00000110075.15" ; ccdsid "CCDS8182.1" ; exon_id "ENSE00003792120.1" ; exon_number 4 ; gene_id "PPP6R3--AP002813.1^PPP6R3^ENSG00000110075.15" ; gene_name PPP6R3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167596.6" ; havana_transcript "OTTHUMT00000395284.1" ; hgnc_id "HGNC:1173" ; level 2 ; orig_coord_info "chr11,68537665,68537891,+" ; protein_id "ENSP00000265636.4" ; tag basic CCDS ; transcript_id "PPP6R3--AP002813.1^ENST00000265636.9" ; transcript_name "PPP6R3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP6R3--AP002813.1 HAVANA mRNA 1083 36230 . + . FI_gene_label "PPP6R3^ENSG00000110075.15" ; ID "PPP6R3--AP002813.1^ENST00000265636.9" ; Parent "PPP6R3--AP002813.1^PPP6R3^ENSG00000110075.15" ; ccdsid "CCDS8182.1" ; exon_id "ENSE00003792120.1" ; exon_number 4 ; gene_id "PPP6R3--AP002813.1^PPP6R3^ENSG00000110075.15" ; gene_name PPP6R3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167596.6" ; havana_transcript "OTTHUMT00000395284.1" ; hgnc_id "HGNC:1173" ; level 2 ; orig_coord_info "chr11,68537665,68537891,+" ; protein_id "ENSP00000265636.4" ; tag basic CCDS ; transcript_id "PPP6R3--AP002813.1^ENST00000265636.9" ; transcript_name "PPP6R3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP6R3--C11orf24 HAVANA gene 1083 36230 . + . FI_gene_label "PPP6R3^ENSG00000110075.15" ; ID "PPP6R3--C11orf24^PPP6R3^ENSG00000110075.15" ; ccdsid "CCDS8182.1" ; exon_id "ENSE00003792120.1" ; exon_number 4 ; gene_id "PPP6R3--C11orf24^PPP6R3^ENSG00000110075.15" ; gene_name PPP6R3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167596.6" ; havana_transcript "OTTHUMT00000395284.1" ; hgnc_id "HGNC:1173" ; level 2 ; orig_coord_info "chr11,68537665,68537891,+" ; protein_id "ENSP00000265636.4" ; tag basic CCDS ; transcript_id "PPP6R3--C11orf24^ENST00000265636.9" ; transcript_name "PPP6R3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP6R3--C11orf24 HAVANA mRNA 1083 36230 . + . FI_gene_label "PPP6R3^ENSG00000110075.15" ; ID "PPP6R3--C11orf24^ENST00000265636.9" ; Parent "PPP6R3--C11orf24^PPP6R3^ENSG00000110075.15" ; ccdsid "CCDS8182.1" ; exon_id "ENSE00003792120.1" ; exon_number 4 ; gene_id "PPP6R3--C11orf24^PPP6R3^ENSG00000110075.15" ; gene_name PPP6R3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167596.6" ; havana_transcript "OTTHUMT00000395284.1" ; hgnc_id "HGNC:1173" ; level 2 ; orig_coord_info "chr11,68537665,68537891,+" ; protein_id "ENSP00000265636.4" ; tag basic CCDS ; transcript_id "PPP6R3--C11orf24^ENST00000265636.9" ; transcript_name "PPP6R3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP6R3--C11orf24 HAVANA gene 39341 45375 . + . FI_gene_label "C11orf24^ENSG00000171067.11" ; ID "PPP6R3--C11orf24^C11orf24^ENSG00000171067.11" ; ccdsid "CCDS8180.1" ; exon_id "ENSE00003800060.1" ; exon_number 3 ; gene_id "PPP6R3--C11orf24^C11orf24^ENSG00000171067.11" ; gene_name C11orf24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167478.3" ; havana_transcript "OTTHUMT00000394750.2" ; hgnc_id "HGNC:1174" ; level 2 ; orig_coord_info "chr11,68263692,68263767,-" ; protein_id "ENSP00000307264.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PPP6R3--C11orf24^ENST00000304271.11" ; transcript_name "C11orf24-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP6R3--C11orf24 HAVANA mRNA 39341 45375 . + . FI_gene_label "C11orf24^ENSG00000171067.11" ; ID "PPP6R3--C11orf24^ENST00000304271.11" ; Parent "PPP6R3--C11orf24^C11orf24^ENSG00000171067.11" ; ccdsid "CCDS8180.1" ; exon_id "ENSE00003800060.1" ; exon_number 3 ; gene_id "PPP6R3--C11orf24^C11orf24^ENSG00000171067.11" ; gene_name C11orf24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167478.3" ; havana_transcript "OTTHUMT00000394750.2" ; hgnc_id "HGNC:1174" ; level 2 ; orig_coord_info "chr11,68263692,68263767,-" ; protein_id "ENSP00000307264.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PPP6R3--C11orf24^ENST00000304271.11" ; transcript_name "C11orf24-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP6R3--LRP5 HAVANA gene 1083 36230 . + . FI_gene_label "PPP6R3^ENSG00000110075.15" ; ID "PPP6R3--LRP5^PPP6R3^ENSG00000110075.15" ; ccdsid "CCDS8182.1" ; exon_id "ENSE00003792120.1" ; exon_number 4 ; gene_id "PPP6R3--LRP5^PPP6R3^ENSG00000110075.15" ; gene_name PPP6R3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167596.6" ; havana_transcript "OTTHUMT00000395284.1" ; hgnc_id "HGNC:1173" ; level 2 ; orig_coord_info "chr11,68537665,68537891,+" ; protein_id "ENSP00000265636.4" ; tag basic CCDS ; transcript_id "PPP6R3--LRP5^ENST00000265636.9" ; transcript_name "PPP6R3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP6R3--LRP5 HAVANA mRNA 1083 36230 . + . FI_gene_label "PPP6R3^ENSG00000110075.15" ; ID "PPP6R3--LRP5^ENST00000265636.9" ; Parent "PPP6R3--LRP5^PPP6R3^ENSG00000110075.15" ; ccdsid "CCDS8182.1" ; exon_id "ENSE00003792120.1" ; exon_number 4 ; gene_id "PPP6R3--LRP5^PPP6R3^ENSG00000110075.15" ; gene_name PPP6R3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167596.6" ; havana_transcript "OTTHUMT00000395284.1" ; hgnc_id "HGNC:1173" ; level 2 ; orig_coord_info "chr11,68537665,68537891,+" ; protein_id "ENSP00000265636.4" ; tag basic CCDS ; transcript_id "PPP6R3--LRP5^ENST00000265636.9" ; transcript_name "PPP6R3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP6R3--LRP5 HAVANA gene 39313 69145 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "PPP6R3--LRP5^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "PPP6R3--LRP5^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP6R3--LRP5^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP6R3--LRP5 HAVANA mRNA 39313 69145 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "PPP6R3--LRP5^ENST00000294304.12" ; Parent "PPP6R3--LRP5^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "PPP6R3--LRP5^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP6R3--LRP5^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRR12--CCDC8 HAVANA gene 20973 24208 . + . FI_gene_label "CCDC8^ENSG00000169515.8" ; ID "PRR12--CCDC8^CCDC8^ENSG00000169515.8" ; ccdsid "CCDS12685.1" ; exon_id "ENSE00001134624.7" ; exon_number 1 ; gene_id "PRR12--CCDC8^CCDC8^ENSG00000169515.8" ; gene_name CCDC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162348.4" ; havana_transcript "OTTHUMT00000500953.2" ; hgnc_id "HGNC:25367" ; level 2 ; orig_coord_info "chr19,46411197,46412810,-" ; protein_id "ENSP00000303158.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRR12--CCDC8^ENST00000307522.5" ; transcript_name "CCDC8-201" ; transcript_support_level NA ; transcript_type protein_coding
PRR12--CCDC8 HAVANA mRNA 20973 24208 . + . FI_gene_label "CCDC8^ENSG00000169515.8" ; ID "PRR12--CCDC8^ENST00000307522.5" ; Parent "PRR12--CCDC8^CCDC8^ENSG00000169515.8" ; ccdsid "CCDS12685.1" ; exon_id "ENSE00001134624.7" ; exon_number 1 ; gene_id "PRR12--CCDC8^CCDC8^ENSG00000169515.8" ; gene_name CCDC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162348.4" ; havana_transcript "OTTHUMT00000500953.2" ; hgnc_id "HGNC:25367" ; level 2 ; orig_coord_info "chr19,46411197,46412810,-" ; protein_id "ENSP00000303158.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRR12--CCDC8^ENST00000307522.5" ; transcript_name "CCDC8-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PRR12--CCDC8 HAVANA gene 1001 17972 . + . FI_gene_label "PRR12^ENSG00000126464.14" ; ID "PRR12--CCDC8^PRR12^ENSG00000126464.14" ; ccdsid "CCDS46143.1" ; exon_id "ENSE00001650300.3" ; exon_number 1 ; gene_id "PRR12--CCDC8^PRR12^ENSG00000126464.14" ; gene_name PRR12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183275.3" ; havana_transcript "OTTHUMT00000465915.2" ; hgnc_id "HGNC:29217" ; level 1 ; orig_coord_info "chr19,49591655,49591740,+" ; protein_id "ENSP00000394510.1" ; tag basic MANE_Select appris_principal_2 exp_conf CCDS ; transcript_id "PRR12--CCDC8^ENST00000418929.7" ; transcript_name "PRR12-201" ; transcript_support_level 5 ; transcript_type protein_coding
PRR12--CCDC8 HAVANA mRNA 1001 17972 . + . FI_gene_label "PRR12^ENSG00000126464.14" ; ID "PRR12--CCDC8^ENST00000418929.7" ; Parent "PRR12--CCDC8^PRR12^ENSG00000126464.14" ; ccdsid "CCDS46143.1" ; exon_id "ENSE00001650300.3" ; exon_number 1 ; gene_id "PRR12--CCDC8^PRR12^ENSG00000126464.14" ; gene_name PRR12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183275.3" ; havana_transcript "OTTHUMT00000465915.2" ; hgnc_id "HGNC:29217" ; level 1 ; orig_coord_info "chr19,49591655,49591740,+" ; protein_id "ENSP00000394510.1" ; tag basic MANE_Select appris_principal_2 exp_conf CCDS ; transcript_id "PRR12--CCDC8^ENST00000418929.7" ; transcript_name "PRR12-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PRR12--PPP5C HAVANA gene 20973 33817 . + . FI_gene_label "PPP5C^ENSG00000011485.15" ; ID "PRR12--PPP5C^PPP5C^ENSG00000011485.15" ; ccdsid "CCDS12684.1" ; exon_id "ENSE00001134741.5" ; exon_number 1 ; gene_id "PRR12--PPP5C^PPP5C^ENSG00000011485.15" ; gene_name PPP5C ; gene_type protein_coding ; havana_gene "OTTHUMG00000134287.6" ; havana_transcript "OTTHUMT00000258969.3" ; hgnc_id "HGNC:9322" ; level 2 ; orig_coord_info "chr19,46347097,46347217,+" ; protein_id "ENSP00000012443.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRR12--PPP5C^ENST00000012443.9" ; transcript_name "PPP5C-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRR12--PPP5C HAVANA mRNA 20973 33817 . + . FI_gene_label "PPP5C^ENSG00000011485.15" ; ID "PRR12--PPP5C^ENST00000012443.9" ; Parent "PRR12--PPP5C^PPP5C^ENSG00000011485.15" ; ccdsid "CCDS12684.1" ; exon_id "ENSE00001134741.5" ; exon_number 1 ; gene_id "PRR12--PPP5C^PPP5C^ENSG00000011485.15" ; gene_name PPP5C ; gene_type protein_coding ; havana_gene "OTTHUMG00000134287.6" ; havana_transcript "OTTHUMT00000258969.3" ; hgnc_id "HGNC:9322" ; level 2 ; orig_coord_info "chr19,46347097,46347217,+" ; protein_id "ENSP00000012443.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRR12--PPP5C^ENST00000012443.9" ; transcript_name "PPP5C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRR12--PPP5C HAVANA gene 1001 17972 . + . FI_gene_label "PRR12^ENSG00000126464.14" ; ID "PRR12--PPP5C^PRR12^ENSG00000126464.14" ; ccdsid "CCDS46143.1" ; exon_id "ENSE00001650300.3" ; exon_number 1 ; gene_id "PRR12--PPP5C^PRR12^ENSG00000126464.14" ; gene_name PRR12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183275.3" ; havana_transcript "OTTHUMT00000465915.2" ; hgnc_id "HGNC:29217" ; level 1 ; orig_coord_info "chr19,49591655,49591740,+" ; protein_id "ENSP00000394510.1" ; tag basic MANE_Select appris_principal_2 exp_conf CCDS ; transcript_id "PRR12--PPP5C^ENST00000418929.7" ; transcript_name "PRR12-201" ; transcript_support_level 5 ; transcript_type protein_coding
PRR12--PPP5C HAVANA mRNA 1001 17972 . + . FI_gene_label "PRR12^ENSG00000126464.14" ; ID "PRR12--PPP5C^ENST00000418929.7" ; Parent "PRR12--PPP5C^PRR12^ENSG00000126464.14" ; ccdsid "CCDS46143.1" ; exon_id "ENSE00001650300.3" ; exon_number 1 ; gene_id "PRR12--PPP5C^PRR12^ENSG00000126464.14" ; gene_name PRR12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183275.3" ; havana_transcript "OTTHUMT00000465915.2" ; hgnc_id "HGNC:29217" ; level 1 ; orig_coord_info "chr19,49591655,49591740,+" ; protein_id "ENSP00000394510.1" ; tag basic MANE_Select appris_principal_2 exp_conf CCDS ; transcript_id "PRR12--PPP5C^ENST00000418929.7" ; transcript_name "PRR12-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PSG8--CD177 HAVANA gene 2137 8719 . + . FI_gene_label "PSG8^ENSG00000124467.19" ; ID "PSG8--CD177^PSG8^ENSG00000124467.19" ; ccdsid "CCDS33037.1" ; exon_id "ENSE00003163264.1" ; exon_number 1 ; gene_id "PSG8--CD177^PSG8^ENSG00000124467.19" ; gene_name PSG8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151118.3" ; havana_transcript "OTTHUMT00000464526.1" ; hgnc_id "HGNC:9525" ; level 2 ; orig_coord_info "chr19,42765518,42765581,-" ; protein_id "ENSP00000305005.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PSG8--CD177^ENST00000306511.5" ; transcript_name "PSG8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PSG8--CD177 HAVANA mRNA 2137 8719 . + . FI_gene_label "PSG8^ENSG00000124467.19" ; ID "PSG8--CD177^ENST00000306511.5" ; Parent "PSG8--CD177^PSG8^ENSG00000124467.19" ; ccdsid "CCDS33037.1" ; exon_id "ENSE00003163264.1" ; exon_number 1 ; gene_id "PSG8--CD177^PSG8^ENSG00000124467.19" ; gene_name PSG8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151118.3" ; havana_transcript "OTTHUMT00000464526.1" ; hgnc_id "HGNC:9525" ; level 2 ; orig_coord_info "chr19,42765518,42765581,-" ; protein_id "ENSP00000305005.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PSG8--CD177^ENST00000306511.5" ; transcript_name "PSG8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PSG8--CD177 HAVANA gene 13296 18797 . + . FI_gene_label "CD177^ENSG00000204936.10" ; ID "PSG8--CD177^CD177^ENSG00000204936.10" ; exon_id "ENSE00003739430.1" ; exon_number 1 ; gene_id "PSG8--CD177^CD177^ENSG00000204936.10" ; gene_name CD177 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185320.4" ; havana_transcript "OTTHUMT00000470164.2" ; hgnc_id "HGNC:30072" ; level 2 ; orig_coord_info "chr19,43353715,43353766,+" ; protein_id "ENSP00000367251.2" ; transcript_id "PSG8--CD177^ENST00000378012.3" ; transcript_name "CD177-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
PSG8--CD177 HAVANA mRNA 13296 18797 . + . FI_gene_label "CD177^ENSG00000204936.10" ; ID "PSG8--CD177^ENST00000378012.3" ; Parent "PSG8--CD177^CD177^ENSG00000204936.10" ; exon_id "ENSE00003739430.1" ; exon_number 1 ; gene_id "PSG8--CD177^CD177^ENSG00000204936.10" ; gene_name CD177 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185320.4" ; havana_transcript "OTTHUMT00000470164.2" ; hgnc_id "HGNC:30072" ; level 2 ; orig_coord_info "chr19,43353715,43353766,+" ; protein_id "ENSP00000367251.2" ; transcript_id "PSG8--CD177^ENST00000378012.3" ; transcript_name "CD177-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AGAP12P--FRMPD2 HAVANA gene 1042 9399 . + . FI_gene_label "AGAP12P^ENSG00000265018.6" ; ID "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; exon_id "ENSE00002718806.2" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; gene_name AGAP12P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018164.4" ; havana_transcript "OTTHUMT00000047912.4" ; hgnc_id "HGNC:23661" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48031376,48031599,-" ; tag pseudo_consens basic ; transcript_id "AGAP12P--FRMPD2^ENST00000585227.6" ; transcript_name "AGAP12P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AGAP12P--FRMPD2 HAVANA RNA 1042 9399 . + . FI_gene_label "AGAP12P^ENSG00000265018.6" ; ID "AGAP12P--FRMPD2^ENST00000585227.6" ; Parent "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; exon_id "ENSE00002718806.2" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; gene_name AGAP12P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018164.4" ; havana_transcript "OTTHUMT00000047912.4" ; hgnc_id "HGNC:23661" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48031376,48031599,-" ; tag pseudo_consens basic ; transcript_id "AGAP12P--FRMPD2^ENST00000585227.6" ; transcript_name "AGAP12P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AL669831.4--SEPTIN14 HAVANA gene 1001 5872 . + . FI_gene_label "AL669831.4^ENSG00000230092.7" ; ID "AL669831.4--SEPTIN14^AL669831.4^ENSG00000230092.7" ; exon_id "ENSE00001746491.1" ; exon_number 1 ; gene_id "AL669831.4--SEPTIN14^AL669831.4^ENSG00000230092.7" ; gene_name "AL669831.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002403.3" ; havana_transcript "OTTHUMT00000448550.2" ; level 2 ; orig_coord_info "chr1,817373,817712,-" ; tag basic ; transcript_id "AL669831.4--SEPTIN14^ENST00000447500.4" ; transcript_name "AL669831.4-201" ; transcript_support_level 5 ; transcript_type processed_transcript
AL669831.4--SEPTIN14 HAVANA RNA 1001 5872 . + . FI_gene_label "AL669831.4^ENSG00000230092.7" ; ID "AL669831.4--SEPTIN14^ENST00000447500.4" ; Parent "AL669831.4--SEPTIN14^AL669831.4^ENSG00000230092.7" ; exon_id "ENSE00001746491.1" ; exon_number 1 ; gene_id "AL669831.4--SEPTIN14^AL669831.4^ENSG00000230092.7" ; gene_name "AL669831.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002403.3" ; havana_transcript "OTTHUMT00000448550.2" ; level 2 ; orig_coord_info "chr1,817373,817712,-" ; tag basic ; transcript_id "AL669831.4--SEPTIN14^ENST00000447500.4" ; transcript_name "AL669831.4-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
ANKRD42--AC118650.1 ENSEMBL gene 23627 23715 . + . FI_gene_label "AC118650.1^ENSG00000276685.1" ; ID "ANKRD42--AC118650.1^AC118650.1^ENSG00000276685.1" ; exon_id "ENSE00003715315.1" ; exon_number 1 ; gene_id "ANKRD42--AC118650.1^AC118650.1^ENSG00000276685.1" ; gene_name "AC118650.1" ; gene_type misc_RNA ; level 3 ; orig_coord_info "chr8,46028804,46028892,-" ; tag basic ; transcript_id "ANKRD42--AC118650.1^ENST00000618609.1" ; transcript_name "AC118650.1-201" ; transcript_support_level NA ; transcript_type misc_RNA
ANKRD42--AC118650.1 ENSEMBL RNA 23627 23715 . + . FI_gene_label "AC118650.1^ENSG00000276685.1" ; ID "ANKRD42--AC118650.1^ENST00000618609.1" ; Parent "ANKRD42--AC118650.1^AC118650.1^ENSG00000276685.1" ; exon_id "ENSE00003715315.1" ; exon_number 1 ; gene_id "ANKRD42--AC118650.1^AC118650.1^ENSG00000276685.1" ; gene_name "AC118650.1" ; gene_type misc_RNA ; level 3 ; orig_coord_info "chr8,46028804,46028892,-" ; tag basic ; transcript_id "ANKRD42--AC118650.1^ENST00000618609.1" ; transcript_name "AC118650.1-201" ; transcript_support_level NA ; transcript_type misc_RNA
L1 and L2 created:
ANKRD42--AC139365.1 HAVANA gene 23627 23948 . + . FI_gene_label "AC139365.1^ENSG00000253198.1" ; ID "ANKRD42--AC139365.1^AC139365.1^ENSG00000253198.1" ; exon_id "ENSE00002120320.1" ; exon_number 1 ; gene_id "ANKRD42--AC139365.1^AC139365.1^ENSG00000253198.1" ; gene_name "AC139365.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164120.1" ; havana_transcript "OTTHUMT00000377321.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,43674270,43674591,-" ; tag pseudo_consens basic ; transcript_id "ANKRD42--AC139365.1^ENST00000519417.1" ; transcript_name "AC139365.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ANKRD42--AC139365.1 HAVANA RNA 23627 23948 . + . FI_gene_label "AC139365.1^ENSG00000253198.1" ; ID "ANKRD42--AC139365.1^ENST00000519417.1" ; Parent "ANKRD42--AC139365.1^AC139365.1^ENSG00000253198.1" ; exon_id "ENSE00002120320.1" ; exon_number 1 ; gene_id "ANKRD42--AC139365.1^AC139365.1^ENSG00000253198.1" ; gene_name "AC139365.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164120.1" ; havana_transcript "OTTHUMT00000377321.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,43674270,43674591,-" ; tag pseudo_consens basic ; transcript_id "ANKRD42--AC139365.1^ENST00000519417.1" ; transcript_name "AC139365.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AP000487.1--ADGRA2 HAVANA gene 1001 5789 . + . FI_gene_label "AP000487.1^ENSG00000246889.2" ; ID "AP000487.1--ADGRA2^AP000487.1^ENSG00000246889.2" ; exon_id "ENSE00001966719.2" ; exon_number 1 ; gene_id "AP000487.1--ADGRA2^AP000487.1^ENSG00000246889.2" ; gene_name "AP000487.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000167270.2" ; havana_transcript "OTTHUMT00000393933.2" ; level 2 ; orig_coord_info "chr11,70398098,70398488,-" ; tag basic ; transcript_id "AP000487.1--ADGRA2^ENST00000500185.2" ; transcript_name "AP000487.1-202" ; transcript_support_level 2 ; transcript_type lncRNA
AP000487.1--ADGRA2 HAVANA RNA 1001 5789 . + . FI_gene_label "AP000487.1^ENSG00000246889.2" ; ID "AP000487.1--ADGRA2^ENST00000500185.2" ; Parent "AP000487.1--ADGRA2^AP000487.1^ENSG00000246889.2" ; exon_id "ENSE00001966719.2" ; exon_number 1 ; gene_id "AP000487.1--ADGRA2^AP000487.1^ENSG00000246889.2" ; gene_name "AP000487.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000167270.2" ; havana_transcript "OTTHUMT00000393933.2" ; level 2 ; orig_coord_info "chr11,70398098,70398488,-" ; tag basic ; transcript_id "AP000487.1--ADGRA2^ENST00000500185.2" ; transcript_name "AP000487.1-202" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
BMS1P7--AGAP14P HAVANA gene 1001 7575 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "BMS1P7--AGAP14P^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "BMS1P7--AGAP14P^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "BMS1P7--AGAP14P^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
BMS1P7--AGAP14P HAVANA RNA 1001 7575 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "BMS1P7--AGAP14P^ENST00000602440.2" ; Parent "BMS1P7--AGAP14P^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "BMS1P7--AGAP14P^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "BMS1P7--AGAP14P^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
BMS1P7--AGAP14P HAVANA gene 10576 18649 . + . FI_gene_label "AGAP14P^ENSG00000279058.2" ; ID "BMS1P7--AGAP14P^AGAP14P^ENSG00000279058.2" ; exon_id "ENSE00003760240.1" ; exon_number 1 ; gene_id "BMS1P7--AGAP14P^AGAP14P^ENSG00000279058.2" ; gene_name AGAP14P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000192004.1" ; havana_transcript "OTTHUMT00000491977.1" ; hgnc_id "HGNC:23660" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr10,46337224,46337446,+" ; tag basic ; transcript_id "BMS1P7--AGAP14P^ENST00000624701.2" ; transcript_name "AGAP14P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
BMS1P7--AGAP14P HAVANA RNA 10576 18649 . + . FI_gene_label "AGAP14P^ENSG00000279058.2" ; ID "BMS1P7--AGAP14P^ENST00000624701.2" ; Parent "BMS1P7--AGAP14P^AGAP14P^ENSG00000279058.2" ; exon_id "ENSE00003760240.1" ; exon_number 1 ; gene_id "BMS1P7--AGAP14P^AGAP14P^ENSG00000279058.2" ; gene_name AGAP14P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000192004.1" ; havana_transcript "OTTHUMT00000491977.1" ; hgnc_id "HGNC:23660" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr10,46337224,46337446,+" ; tag basic ; transcript_id "BMS1P7--AGAP14P^ENST00000624701.2" ; transcript_name "AGAP14P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
DLG2--AC091182.1 HAVANA gene 65224 66536 . + . FI_gene_label "AC091182.1^ENSG00000253123.4" ; ID "DLG2--AC091182.1^AC091182.1^ENSG00000253123.4" ; exon_id "ENSE00002110066.1" ; exon_number 1 ; gene_id "DLG2--AC091182.1^AC091182.1^ENSG00000253123.4" ; gene_name "AC091182.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163995.4" ; havana_transcript "OTTHUMT00000376673.1" ; level 1 ; orig_coord_info "chr8,37331767,37331984,-" ; tag exp_conf ; transcript_id "DLG2--AC091182.1^ENST00000518765.1" ; transcript_name "AC091182.1-202" ; transcript_support_level 2 ; transcript_type lncRNA
DLG2--AC091182.1 HAVANA RNA 65224 66536 . + . FI_gene_label "AC091182.1^ENSG00000253123.4" ; ID "DLG2--AC091182.1^ENST00000518765.1" ; Parent "DLG2--AC091182.1^AC091182.1^ENSG00000253123.4" ; exon_id "ENSE00002110066.1" ; exon_number 1 ; gene_id "DLG2--AC091182.1^AC091182.1^ENSG00000253123.4" ; gene_name "AC091182.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163995.4" ; havana_transcript "OTTHUMT00000376673.1" ; level 1 ; orig_coord_info "chr8,37331767,37331984,-" ; tag exp_conf ; transcript_id "DLG2--AC091182.1^ENST00000518765.1" ; transcript_name "AC091182.1-202" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
DLG2--AC091182.2 HAVANA gene 65217 66502 . + . FI_gene_label "AC091182.2^ENSG00000253746.1" ; ID "DLG2--AC091182.2^AC091182.2^ENSG00000253746.1" ; exon_id "ENSE00002129057.1" ; exon_number 1 ; gene_id "DLG2--AC091182.2^AC091182.2^ENSG00000253746.1" ; gene_name "AC091182.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164278.1" ; havana_transcript "OTTHUMT00000378073.1" ; level 2 ; orig_coord_info "chr8,37406696,37406724,-" ; tag basic ; transcript_id "DLG2--AC091182.2^ENST00000520431.1" ; transcript_name "AC091182.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
DLG2--AC091182.2 HAVANA RNA 65217 66502 . + . FI_gene_label "AC091182.2^ENSG00000253746.1" ; ID "DLG2--AC091182.2^ENST00000520431.1" ; Parent "DLG2--AC091182.2^AC091182.2^ENSG00000253746.1" ; exon_id "ENSE00002129057.1" ; exon_number 1 ; gene_id "DLG2--AC091182.2^AC091182.2^ENSG00000253746.1" ; gene_name "AC091182.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164278.1" ; havana_transcript "OTTHUMT00000378073.1" ; level 2 ; orig_coord_info "chr8,37406696,37406724,-" ; tag basic ; transcript_id "DLG2--AC091182.2^ENST00000520431.1" ; transcript_name "AC091182.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
FSIP1--AC013652.1 HAVANA RNA 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^ENST00000558209.1" ; Parent "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
KAT6A--AC010857.1 HAVANA gene 41831 42424 . + . FI_gene_label "AC010857.1^ENSG00000272479.1" ; ID "KAT6A--AC010857.1^AC010857.1^ENSG00000272479.1" ; exon_id "ENSE00003697231.1" ; exon_number 1 ; gene_id "KAT6A--AC010857.1^AC010857.1^ENSG00000272479.1" ; gene_name "AC010857.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185447.1" ; havana_transcript "OTTHUMT00000470543.1" ; level 2 ; orig_coord_info "chr8,40519565,40520158,-" ; tag basic ; transcript_id "KAT6A--AC010857.1^ENST00000606398.1" ; transcript_name "AC010857.1-201" ; transcript_support_level NA ; transcript_type lncRNA
KAT6A--AC010857.1 HAVANA RNA 41831 42424 . + . FI_gene_label "AC010857.1^ENSG00000272479.1" ; ID "KAT6A--AC010857.1^ENST00000606398.1" ; Parent "KAT6A--AC010857.1^AC010857.1^ENSG00000272479.1" ; exon_id "ENSE00003697231.1" ; exon_number 1 ; gene_id "KAT6A--AC010857.1^AC010857.1^ENSG00000272479.1" ; gene_name "AC010857.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185447.1" ; havana_transcript "OTTHUMT00000470543.1" ; level 2 ; orig_coord_info "chr8,40519565,40520158,-" ; tag basic ; transcript_id "KAT6A--AC010857.1^ENST00000606398.1" ; transcript_name "AC010857.1-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
KAT6A--AC105999.1 HAVANA gene 41853 47546 . + . FI_gene_label "AC105999.1^ENSG00000253354.2" ; ID "KAT6A--AC105999.1^AC105999.1^ENSG00000253354.2" ; exon_id "ENSE00003859547.1" ; exon_number 1 ; gene_id "KAT6A--AC105999.1^AC105999.1^ENSG00000253354.2" ; gene_name "AC105999.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164048.5" ; havana_transcript "OTTHUMT00000524700.1" ; level 2 ; orig_coord_info "chr8,40370003,40370096,+" ; tag basic TAGENE ; transcript_id "KAT6A--AC105999.1^ENST00000518722.2" ; transcript_name "AC105999.1-204" ; transcript_support_level 3 ; transcript_type lncRNA
KAT6A--AC105999.1 HAVANA RNA 41853 47546 . + . FI_gene_label "AC105999.1^ENSG00000253354.2" ; ID "KAT6A--AC105999.1^ENST00000518722.2" ; Parent "KAT6A--AC105999.1^AC105999.1^ENSG00000253354.2" ; exon_id "ENSE00003859547.1" ; exon_number 1 ; gene_id "KAT6A--AC105999.1^AC105999.1^ENSG00000253354.2" ; gene_name "AC105999.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164048.5" ; havana_transcript "OTTHUMT00000524700.1" ; level 2 ; orig_coord_info "chr8,40370003,40370096,+" ; tag basic TAGENE ; transcript_id "KAT6A--AC105999.1^ENST00000518722.2" ; transcript_name "AC105999.1-204" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
KAT6A--SIRLNT HAVANA gene 44215 46081 . + . FI_gene_label "SIRLNT^ENSG00000253802.2" ; ID "KAT6A--SIRLNT^SIRLNT^ENSG00000253802.2" ; exon_id "ENSE00002097749.1" ; exon_number 1 ; gene_id "KAT6A--SIRLNT^SIRLNT^ENSG00000253802.2" ; gene_name SIRLNT ; gene_type lncRNA ; havana_gene "OTTHUMG00000164047.3" ; havana_transcript "OTTHUMT00000376947.1" ; hgnc_id "HGNC:53902" ; level 2 ; orig_coord_info "chr8,40343278,40343363,-" ; transcript_id "KAT6A--SIRLNT^ENST00000521030.1" ; transcript_name "SIRLNT-201" ; transcript_support_level 3 ; transcript_type lncRNA
KAT6A--SIRLNT HAVANA RNA 44215 46081 . + . FI_gene_label "SIRLNT^ENSG00000253802.2" ; ID "KAT6A--SIRLNT^ENST00000521030.1" ; Parent "KAT6A--SIRLNT^SIRLNT^ENSG00000253802.2" ; exon_id "ENSE00002097749.1" ; exon_number 1 ; gene_id "KAT6A--SIRLNT^SIRLNT^ENSG00000253802.2" ; gene_name SIRLNT ; gene_type lncRNA ; havana_gene "OTTHUMG00000164047.3" ; havana_transcript "OTTHUMT00000376947.1" ; hgnc_id "HGNC:53902" ; level 2 ; orig_coord_info "chr8,40343278,40343363,-" ; transcript_id "KAT6A--SIRLNT^ENST00000521030.1" ; transcript_name "SIRLNT-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
MIR4457--TERT ENSEMBL gene 1001 1068 . + . FI_gene_label "MIR4457^ENSG00000263670.1" ; ID "MIR4457--TERT^MIR4457^ENSG00000263670.1" ; exon_id "ENSE00002734746.1" ; exon_number 1 ; gene_id "MIR4457--TERT^MIR4457^ENSG00000263670.1" ; gene_name MIR4457 ; gene_type miRNA ; hgnc_id "HGNC:41554" ; level 3 ; orig_coord_info "chr5,1309310,1309377,-" ; tag basic ; transcript_id "MIR4457--TERT^ENST00000580663.1" ; transcript_name "MIR4457-201" ; transcript_support_level NA ; transcript_type miRNA
MIR4457--TERT ENSEMBL RNA 1001 1068 . + . FI_gene_label "MIR4457^ENSG00000263670.1" ; ID "MIR4457--TERT^ENST00000580663.1" ; Parent "MIR4457--TERT^MIR4457^ENSG00000263670.1" ; exon_id "ENSE00002734746.1" ; exon_number 1 ; gene_id "MIR4457--TERT^MIR4457^ENSG00000263670.1" ; gene_name MIR4457 ; gene_type miRNA ; hgnc_id "HGNC:41554" ; level 3 ; orig_coord_info "chr5,1309310,1309377,-" ; tag basic ; transcript_id "MIR4457--TERT^ENST00000580663.1" ; transcript_name "MIR4457-201" ; transcript_support_level NA ; transcript_type miRNA
L1 and L2 created:
PMS2P8--CCDC146 HAVANA gene 1001 5891 . + . FI_gene_label "PMS2P8^ENSG00000273897.1" ; ID "PMS2P8--CCDC146^PMS2P8^ENSG00000273897.1" ; exon_id "ENSE00002487863.2" ; exon_number 1 ; gene_id "PMS2P8--CCDC146^PMS2P8^ENSG00000273897.1" ; gene_name PMS2P8 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188239.1" ; havana_transcript "OTTHUMT00000476736.1" ; hgnc_id "HGNC:33516" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73037371,73037525,+" ; tag basic ; transcript_id "PMS2P8--CCDC146^ENST00000380410.6" ; transcript_name "PMS2P8-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
PMS2P8--CCDC146 HAVANA RNA 1001 5891 . + . FI_gene_label "PMS2P8^ENSG00000273897.1" ; ID "PMS2P8--CCDC146^ENST00000380410.6" ; Parent "PMS2P8--CCDC146^PMS2P8^ENSG00000273897.1" ; exon_id "ENSE00002487863.2" ; exon_number 1 ; gene_id "PMS2P8--CCDC146^PMS2P8^ENSG00000273897.1" ; gene_name PMS2P8 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188239.1" ; havana_transcript "OTTHUMT00000476736.1" ; hgnc_id "HGNC:33516" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73037371,73037525,+" ; tag basic ; transcript_id "PMS2P8--CCDC146^ENST00000380410.6" ; transcript_name "PMS2P8-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
PPP6R3--AP002813.1 HAVANA gene 39313 41947 . + . FI_gene_label "AP002813.1^ENSG00000286369.1" ; ID "PPP6R3--AP002813.1^AP002813.1^ENSG00000286369.1" ; exon_id "ENSE00003865193.1" ; exon_number 1 ; gene_id "PPP6R3--AP002813.1^AP002813.1^ENSG00000286369.1" ; gene_name "AP002813.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194134.1" ; havana_transcript "OTTHUMT00000511512.1" ; level 2 ; orig_coord_info "chr11,68272102,68272176,+" ; tag basic TAGENE ; transcript_id "PPP6R3--AP002813.1^ENST00000668632.1" ; transcript_name "AP002813.1-201" ; transcript_type lncRNA
PPP6R3--AP002813.1 HAVANA RNA 39313 41947 . + . FI_gene_label "AP002813.1^ENSG00000286369.1" ; ID "PPP6R3--AP002813.1^ENST00000668632.1" ; Parent "PPP6R3--AP002813.1^AP002813.1^ENSG00000286369.1" ; exon_id "ENSE00003865193.1" ; exon_number 1 ; gene_id "PPP6R3--AP002813.1^AP002813.1^ENSG00000286369.1" ; gene_name "AP002813.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194134.1" ; havana_transcript "OTTHUMT00000511512.1" ; level 2 ; orig_coord_info "chr11,68272102,68272176,+" ; tag basic TAGENE ; transcript_id "PPP6R3--AP002813.1^ENST00000668632.1" ; transcript_name "AP002813.1-201" ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
696 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 1 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1178 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 57 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed