File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/a2ae17e1b8fa102a00604afd5236f0/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 272
  Pass (FILTER=PASS): 14 (5.1%)
  Fail (FILTER=FAIL): 258 (94.9%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 9
  All 9 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 63
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 32
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 32
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 21
  confidence_below_min(low<high): 20
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 19
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 16
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 13
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 9
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 8
  confidence_below_min(medium<high);aih_curated_blacklist: 4
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 3
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 2
  total_reads_below_min(7.0<8.0): 2

Breakdown by confidence:
  high: 14 pass, 7 fail (total: 21)
  low: 0 pass, 135 fail (total: 135)
  medium: 0 pass, 116 fail (total: 116)
Arriba filter: 272 rows -> 14 PASS; wrote aih-tih-sc-69be7e-R1_A23YTGFLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-69be7e-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-69be7e-R1_A23YTGFLT4_1.arriba.fusions.filter_summary.txt