Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/fe54d53b70bfa13b975fb5a0c5ebda/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/fe54d53b70bfa13b975fb5a0c5ebda/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/63df0e76099b03c47ce9f2cdcaf083/aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/a0688930551e426909ca1d9d6d7364/aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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