Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/62847d70aa34a44a9f113594e7b847/aih-tih-sc-776623-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/b5656541ee309e602ffddae57c026f/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/b5656541ee309e602ffddae57c026f/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/3b22b6d589a4aa28118e78bbf631c4/aih-tih-sc-776623-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
TLK2P1--AC110079.1
starfusion
TLK2--FAM157A
starfusion
arriba
TNRC6B--DLGAP4-AS1
starfusion
arriba
FAM53B--CTBP2
starfusion
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
AC092666.2--ACTR3B
arriba
TELO2--TPSB2
arriba
TELO2--TPSAB1
arriba
AP001347.1--ANKRD20A11P
arriba
0%| | 0/26 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1: 0%| | 0/26 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1: 4%|▍ | 1/26 [00:00<00:02, 9.26it/s]
Processing TLK2--FAM157A: 4%|▍ | 1/26 [00:00<00:02, 9.26it/s]
Processing TLK2--FAM157A: 8%|▊ | 2/26 [00:00<00:02, 9.48it/s]
Processing TNRC6B--DLGAP4-AS1: 8%|▊ | 2/26 [00:00<00:02, 9.48it/s]
Processing TNRC6B--DLGAP4-AS1: 12%|█▏ | 3/26 [00:00<00:02, 9.56it/s]
Processing FAM53B--CTBP2: 12%|█▏ | 3/26 [00:00<00:02, 9.56it/s]
Processing FAM53B--CTBP2: 15%|█▌ | 4/26 [00:00<00:02, 9.60it/s]
Processing PCDHGB2--PCDHGC4: 15%|█▌ | 4/26 [00:00<00:02, 9.60it/s]
Processing PCDHGB2--PCDHGC4: 19%|█▉ | 5/26 [00:00<00:02, 9.62it/s]
Processing PCDHGB2--PCDHGA8: 19%|█▉ | 5/26 [00:00<00:02, 9.62it/s]
Processing PCDHGB2--PCDHGA8: 23%|██▎ | 6/26 [00:00<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 23%|██▎ | 6/26 [00:00<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 27%|██▋ | 7/26 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 27%|██▋ | 7/26 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 31%|███ | 8/26 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 31%|███ | 8/26 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 35%|███▍ | 9/26 [00:00<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA10: 35%|███▍ | 9/26 [00:00<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA10: 38%|███▊ | 10/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB7: 38%|███▊ | 10/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB7: 42%|████▏ | 11/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA11: 42%|████▏ | 11/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA11: 46%|████▌ | 12/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA12: 46%|████▌ | 12/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA12: 50%|█████ | 13/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA9: 50%|█████ | 13/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA9: 54%|█████▍ | 14/26 [00:01<00:01, 9.65it/s]
Processing TVP23C--CDRT4: 54%|█████▍ | 14/26 [00:01<00:01, 9.65it/s]
Processing TVP23C--CDRT4: 58%|█████▊ | 15/26 [00:01<00:01, 9.65it/s]
Processing STX16--NPEPL1: 58%|█████▊ | 15/26 [00:01<00:01, 9.65it/s]
Processing STX16--NPEPL1: 62%|██████▏ | 16/26 [00:01<00:01, 9.65it/s]
Processing PCDHA6--PCDHAC1: 62%|██████▏ | 16/26 [00:01<00:01, 9.65it/s]
Processing PCDHA6--PCDHAC1: 65%|██████▌ | 17/26 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC2: 65%|██████▌ | 17/26 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC2: 69%|██████▉ | 18/26 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHA13: 69%|██████▉ | 18/26 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHA13: 73%|███████▎ | 19/26 [00:01<00:00, 9.65it/s]
Processing PCDHA11--PCDHAC1: 73%|███████▎ | 19/26 [00:01<00:00, 9.65it/s]
Processing PCDHA11--PCDHAC1: 77%|███████▋ | 20/26 [00:02<00:00, 9.65it/s]
Processing PCDHA11--PCDHAC2: 77%|███████▋ | 20/26 [00:02<00:00, 9.65it/s]
Processing PCDHA11--PCDHAC2: 81%|████████ | 21/26 [00:02<00:00, 9.65it/s]
Processing PCDHA11--PCDHA13: 81%|████████ | 21/26 [00:02<00:00, 9.65it/s]
Processing PCDHA11--PCDHA13: 85%|████████▍ | 22/26 [00:02<00:00, 9.65it/s]
Processing AC092666.2--ACTR3B: 85%|████████▍ | 22/26 [00:02<00:00, 9.65it/s]
Processing AC092666.2--ACTR3B: 88%|████████▊ | 23/26 [00:02<00:00, 9.66it/s]
Processing TELO2--TPSB2: 88%|████████▊ | 23/26 [00:02<00:00, 9.66it/s]
Processing TELO2--TPSB2: 92%|█████████▏| 24/26 [00:02<00:00, 9.65it/s]
Processing TELO2--TPSAB1: 92%|█████████▏| 24/26 [00:02<00:00, 9.65it/s]
Processing TELO2--TPSAB1: 96%|█████████▌| 25/26 [00:02<00:00, 9.65it/s]
Processing AP001347.1--ANKRD20A11P: 96%|█████████▌| 25/26 [00:02<00:00, 9.65it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 26/26 [00:02<00:00, 9.65it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 26/26 [00:02<00:00, 9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory