Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/62847d70aa34a44a9f113594e7b847/aih-tih-sc-776623-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/b5656541ee309e602ffddae57c026f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/b5656541ee309e602ffddae57c026f/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/3b22b6d589a4aa28118e78bbf631c4/aih-tih-sc-776623-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2P1--AC110079.1
starfusion
TLK2--FAM157A
starfusion
arriba
TNRC6B--DLGAP4-AS1
starfusion
arriba
FAM53B--CTBP2
starfusion
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
AC092666.2--ACTR3B
arriba
TELO2--TPSB2
arriba
TELO2--TPSAB1
arriba
AP001347.1--ANKRD20A11P
arriba

  0%|          | 0/26 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   0%|          | 0/26 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   4%|▍         | 1/26 [00:00<00:02,  9.26it/s]
Processing TLK2--FAM157A:   4%|▍         | 1/26 [00:00<00:02,  9.26it/s]     
Processing TLK2--FAM157A:   8%|▊         | 2/26 [00:00<00:02,  9.48it/s]
Processing TNRC6B--DLGAP4-AS1:   8%|▊         | 2/26 [00:00<00:02,  9.48it/s]
Processing TNRC6B--DLGAP4-AS1:  12%|█▏        | 3/26 [00:00<00:02,  9.56it/s]
Processing FAM53B--CTBP2:  12%|█▏        | 3/26 [00:00<00:02,  9.56it/s]     
Processing FAM53B--CTBP2:  15%|█▌        | 4/26 [00:00<00:02,  9.60it/s]
Processing PCDHGB2--PCDHGC4:  15%|█▌        | 4/26 [00:00<00:02,  9.60it/s]
Processing PCDHGB2--PCDHGC4:  19%|█▉        | 5/26 [00:00<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGA8:  19%|█▉        | 5/26 [00:00<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGA8:  23%|██▎       | 6/26 [00:00<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  23%|██▎       | 6/26 [00:00<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  27%|██▋       | 7/26 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  27%|██▋       | 7/26 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  31%|███       | 8/26 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  31%|███       | 8/26 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  35%|███▍      | 9/26 [00:00<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  35%|███▍      | 9/26 [00:00<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  38%|███▊      | 10/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  38%|███▊      | 10/26 [00:01<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGB7:  42%|████▏     | 11/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  42%|████▏     | 11/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  46%|████▌     | 12/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  46%|████▌     | 12/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  50%|█████     | 13/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  50%|█████     | 13/26 [00:01<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGA9:  54%|█████▍    | 14/26 [00:01<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  54%|█████▍    | 14/26 [00:01<00:01,  9.65it/s]   
Processing TVP23C--CDRT4:  58%|█████▊    | 15/26 [00:01<00:01,  9.65it/s]
Processing STX16--NPEPL1:  58%|█████▊    | 15/26 [00:01<00:01,  9.65it/s]
Processing STX16--NPEPL1:  62%|██████▏   | 16/26 [00:01<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC1:  62%|██████▏   | 16/26 [00:01<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC1:  65%|██████▌   | 17/26 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  65%|██████▌   | 17/26 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  69%|██████▉   | 18/26 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13:  69%|██████▉   | 18/26 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13:  73%|███████▎  | 19/26 [00:01<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC1:  73%|███████▎  | 19/26 [00:01<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC1:  77%|███████▋  | 20/26 [00:02<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC2:  77%|███████▋  | 20/26 [00:02<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC2:  81%|████████  | 21/26 [00:02<00:00,  9.65it/s]
Processing PCDHA11--PCDHA13:  81%|████████  | 21/26 [00:02<00:00,  9.65it/s]
Processing PCDHA11--PCDHA13:  85%|████████▍ | 22/26 [00:02<00:00,  9.65it/s]
Processing AC092666.2--ACTR3B:  85%|████████▍ | 22/26 [00:02<00:00,  9.65it/s]
Processing AC092666.2--ACTR3B:  88%|████████▊ | 23/26 [00:02<00:00,  9.66it/s]
Processing TELO2--TPSB2:  88%|████████▊ | 23/26 [00:02<00:00,  9.66it/s]      
Processing TELO2--TPSB2:  92%|█████████▏| 24/26 [00:02<00:00,  9.65it/s]
Processing TELO2--TPSAB1:  92%|█████████▏| 24/26 [00:02<00:00,  9.65it/s]
Processing TELO2--TPSAB1:  96%|█████████▌| 25/26 [00:02<00:00,  9.65it/s]
Processing AP001347.1--ANKRD20A11P:  96%|█████████▌| 25/26 [00:02<00:00,  9.65it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 26/26 [00:02<00:00,  9.65it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 26/26 [00:02<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory