File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/454c46589be642c251126144149533/.command.log
Size
9.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-5519ab-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/454c46589be642c251126144149533/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/bad6608914656862795255ab98f6eb/aih-tih-sc-5519ab-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/454c46589be642c251126144149533/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/4645268baa1d5f85e3f10ff446ff99/aih-tih-sc-5519ab-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
GUCY1B2--NKAIN2
starfusion
LINC00381--NKAIN2
starfusion
NRG4--TBCA
starfusion
UBE2O--ZIC1
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
C12orf56--NKAIN2
starfusion
PCDHGA4--PCDHGA8
arriba
PCDHGA4--PCDHGA9
arriba
PCDHGA4--PCDHGB6
arriba
PCDHGA4--PCDHGA10
arriba
PCDHGA4--PCDHGB7
arriba
PCDHGA4--PCDHGA11
arriba
PCDHGA4--PCDHGA12
arriba
PCDHGA4--PCDHGC3
arriba
PCDHGA4--PCDHGC4
arriba
PCDHGA4--PCDHGC5
arriba
AC005993.1--RGS6
arriba
SBF2--PPIAP86
arriba
SBF2--LINC01299
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
TVP23C--CDRT4
arriba
C1QTNF3--AMACR
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHA13
arriba
PCDHA11--PCDHAC2
arriba
MTCYBP4--EYA4
arriba
EYA4--EYA4
arriba
RNU6-138P--KCNH8
arriba
KCNH8--KCNH8
arriba
CREBRF--AL137786.2
arriba
CREBRF--LINC02299
arriba
EFL1--GOLGA6L11P
arriba
PMS2P8--CCDC146
arriba
IGFL1P2--HIF3A
arriba

  0%|          | 0/44 [00:00<?, ?it/s]
Processing GUCY1B2--NKAIN2:   0%|          | 0/44 [00:00<?, ?it/s]
Processing GUCY1B2--NKAIN2:   2%|▏         | 1/44 [00:00<00:04,  9.25it/s]
Processing LINC00381--NKAIN2:   2%|▏         | 1/44 [00:00<00:04,  9.25it/s]
Processing LINC00381--NKAIN2:   5%|▍         | 2/44 [00:00<00:04,  9.48it/s]
Processing NRG4--TBCA:   5%|▍         | 2/44 [00:00<00:04,  9.48it/s]       
Processing NRG4--TBCA:   7%|▋         | 3/44 [00:00<00:04,  9.56it/s]
Processing UBE2O--ZIC1:   7%|▋         | 3/44 [00:00<00:04,  9.56it/s]
Processing UBE2O--ZIC1:   9%|▉         | 4/44 [00:00<00:04,  9.59it/s]
Processing TLK2P1--AC110079.1:   9%|▉         | 4/44 [00:00<00:04,  9.59it/s]
Processing TLK2P1--AC110079.1:  11%|█▏        | 5/44 [00:00<00:04,  9.61it/s]
Processing TLK2--AC240565.1:  11%|█▏        | 5/44 [00:00<00:04,  9.61it/s]  
Processing TLK2--AC240565.1:  14%|█▎        | 6/44 [00:00<00:03,  9.63it/s]
Processing C12orf56--NKAIN2:  14%|█▎        | 6/44 [00:00<00:03,  9.63it/s]
Processing C12orf56--NKAIN2:  16%|█▌        | 7/44 [00:00<00:03,  9.63it/s]
Processing PCDHGA4--PCDHGA8:  16%|█▌        | 7/44 [00:00<00:03,  9.63it/s]
Processing PCDHGA4--PCDHGA8:  18%|█▊        | 8/44 [00:00<00:03,  9.64it/s]
Processing PCDHGA4--PCDHGA9:  18%|█▊        | 8/44 [00:00<00:03,  9.64it/s]
Processing PCDHGA4--PCDHGA9:  20%|██        | 9/44 [00:00<00:03,  9.64it/s]
Processing PCDHGA4--PCDHGB6:  20%|██        | 9/44 [00:00<00:03,  9.64it/s]
Processing PCDHGA4--PCDHGB6:  23%|██▎       | 10/44 [00:01<00:03,  9.64it/s]
Processing PCDHGA4--PCDHGA10:  23%|██▎       | 10/44 [00:01<00:03,  9.64it/s]
Processing PCDHGA4--PCDHGA10:  25%|██▌       | 11/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA4--PCDHGB7:  25%|██▌       | 11/44 [00:01<00:03,  9.65it/s] 
Processing PCDHGA4--PCDHGB7:  27%|██▋       | 12/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA4--PCDHGA11:  27%|██▋       | 12/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA4--PCDHGA11:  30%|██▉       | 13/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA4--PCDHGA12:  30%|██▉       | 13/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA4--PCDHGA12:  32%|███▏      | 14/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA4--PCDHGC3:  32%|███▏      | 14/44 [00:01<00:03,  9.65it/s] 
Processing PCDHGA4--PCDHGC3:  34%|███▍      | 15/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA4--PCDHGC4:  34%|███▍      | 15/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA4--PCDHGC4:  36%|███▋      | 16/44 [00:01<00:02,  9.65it/s]
Processing PCDHGA4--PCDHGC5:  36%|███▋      | 16/44 [00:01<00:02,  9.65it/s]
Processing PCDHGA4--PCDHGC5:  39%|███▊      | 17/44 [00:01<00:02,  9.65it/s]
Processing AC005993.1--RGS6:  39%|███▊      | 17/44 [00:01<00:02,  9.65it/s]
Processing AC005993.1--RGS6:  41%|████      | 18/44 [00:01<00:02,  9.65it/s]
Processing SBF2--PPIAP86:  41%|████      | 18/44 [00:01<00:02,  9.65it/s]   
Processing SBF2--PPIAP86:  43%|████▎     | 19/44 [00:01<00:02,  9.65it/s]
Processing SBF2--LINC01299:  43%|████▎     | 19/44 [00:01<00:02,  9.65it/s]
Processing SBF2--LINC01299:  45%|████▌     | 20/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  45%|████▌     | 20/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  48%|████▊     | 21/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  48%|████▊     | 21/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  50%|█████     | 22/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  50%|█████     | 22/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  52%|█████▏    | 23/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  52%|█████▏    | 23/44 [00:02<00:02,  9.65it/s] 
Processing PCDHGB2--PCDHGB7:  55%|█████▍    | 24/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  55%|█████▍    | 24/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  57%|█████▋    | 25/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  57%|█████▋    | 25/44 [00:02<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGC3:  59%|█████▉    | 26/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  59%|█████▉    | 26/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  61%|██████▏   | 27/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  61%|██████▏   | 27/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  64%|██████▎   | 28/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  64%|██████▎   | 28/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  66%|██████▌   | 29/44 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  66%|██████▌   | 29/44 [00:03<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGA9:  68%|██████▊   | 30/44 [00:03<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  68%|██████▊   | 30/44 [00:03<00:01,  9.65it/s]   
Processing TVP23C--CDRT4:  70%|███████   | 31/44 [00:03<00:01,  9.65it/s]
Processing C1QTNF3--AMACR:  70%|███████   | 31/44 [00:03<00:01,  9.65it/s]
Processing C1QTNF3--AMACR:  73%|███████▎  | 32/44 [00:03<00:01,  9.65it/s]
Processing PCDHA11--PCDHAC1:  73%|███████▎  | 32/44 [00:03<00:01,  9.65it/s]
Processing PCDHA11--PCDHAC1:  75%|███████▌  | 33/44 [00:03<00:01,  9.65it/s]
Processing PCDHA11--PCDHA13:  75%|███████▌  | 33/44 [00:03<00:01,  9.65it/s]
Processing PCDHA11--PCDHA13:  77%|███████▋  | 34/44 [00:03<00:01,  9.65it/s]
Processing PCDHA11--PCDHAC2:  77%|███████▋  | 34/44 [00:03<00:01,  9.65it/s]
Processing PCDHA11--PCDHAC2:  80%|███████▉  | 35/44 [00:03<00:00,  9.65it/s]
Processing MTCYBP4--EYA4:  80%|███████▉  | 35/44 [00:03<00:00,  9.65it/s]   
Processing MTCYBP4--EYA4:  82%|████████▏ | 36/44 [00:03<00:00,  9.65it/s]
Processing EYA4--EYA4:  82%|████████▏ | 36/44 [00:03<00:00,  9.65it/s]   
Processing EYA4--EYA4:  84%|████████▍ | 37/44 [00:03<00:00,  9.65it/s]
Processing RNU6-138P--KCNH8:  84%|████████▍ | 37/44 [00:03<00:00,  9.65it/s]
Processing RNU6-138P--KCNH8:  86%|████████▋ | 38/44 [00:03<00:00,  9.65it/s]
Processing KCNH8--KCNH8:  86%|████████▋ | 38/44 [00:03<00:00,  9.65it/s]    
Processing KCNH8--KCNH8:  89%|████████▊ | 39/44 [00:04<00:00,  9.65it/s]
Processing CREBRF--AL137786.2:  89%|████████▊ | 39/44 [00:04<00:00,  9.65it/s]
Processing CREBRF--AL137786.2:  91%|█████████ | 40/44 [00:04<00:00,  9.65it/s]
Processing CREBRF--LINC02299:  91%|█████████ | 40/44 [00:04<00:00,  9.65it/s] 
Processing CREBRF--LINC02299:  93%|█████████▎| 41/44 [00:04<00:00,  9.65it/s]
Processing EFL1--GOLGA6L11P:  93%|█████████▎| 41/44 [00:04<00:00,  9.65it/s] 
Processing EFL1--GOLGA6L11P:  95%|█████████▌| 42/44 [00:04<00:00,  9.65it/s]
Processing PMS2P8--CCDC146:  95%|█████████▌| 42/44 [00:04<00:00,  9.65it/s] 
Processing PMS2P8--CCDC146:  98%|█████████▊| 43/44 [00:04<00:00,  9.65it/s]
Processing IGFL1P2--HIF3A:  98%|█████████▊| 43/44 [00:04<00:00,  9.65it/s] 
Processing IGFL1P2--HIF3A: 100%|██████████| 44/44 [00:04<00:00,  9.65it/s]
Processing IGFL1P2--HIF3A: 100%|██████████| 44/44 [00:04<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory