Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/7483da4a5f2724fe87c13885615525/aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/a69217d3cb75a7e226fb1f6692a0d8/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/a69217d3cb75a7e226fb1f6692a0d8/.command.sh ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 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59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records paired = 190436644 unpaired = 2690998 MERGED PAIRED END READS = 190436644 MATES PROCESSED = 383564286 TOTAL READS = 193127642 DISTINCT READS = 3.78958e+07 DISTINCT COUNTS = 1031 MAX COUNT = 446337 COUNTS OF 1 = 1.00865e+07 MAX TERMS = 100 OBSERVED COUNTS (446338) 1 10086520 2 5197400 3 4183292 4 3537205 5 2942497 6 2406752 7 1931457 8 1536176 9 1208205 10 947497 11 740284 12 580379 13 455284 14 360197 15 285486 16 229172 17 183780 18 149213 19 123296 20 101032 21 84279 22 71495 23 60731 24 51449 25 44261 26 38251 27 33339 28 28918 29 25404 30 22346 31 19624 32 17507 33 15493 34 13559 35 12180 36 10993 37 9902 38 9122 39 8023 40 7376 41 6696 42 6158 43 5664 44 5080 45 4619 46 4227 47 4022 48 3856 49 3657 50 3324 51 3044 52 2799 53 2771 54 2490 55 2378 56 2279 57 2085 58 2021 59 1900 60 1766 61 1698 62 1583 63 1546 64 1447 65 1439 66 1307 67 1344 68 1245 69 1165 70 1147 71 1061 72 1032 73 995 74 960 75 834 76 884 77 796 78 843 79 761 80 700 81 698 82 673 83 671 84 634 85 618 86 640 87 598 88 552 89 560 90 551 91 518 92 500 93 503 94 468 95 485 96 464 97 419 98 408 99 392 100 379 101 347 102 391 103 390 104 335 105 342 106 353 107 310 108 277 109 300 110 260 111 323 112 266 113 295 114 265 115 267 116 255 117 231 118 268 119 258 120 235 121 240 122 206 123 215 124 227 125 221 126 204 127 205 128 193 129 201 130 203 131 190 132 170 133 173 134 186 135 164 136 160 137 153 138 165 139 150 140 153 141 159 142 144 143 128 144 127 145 140 146 124 147 152 148 130 149 153 150 150 151 121 152 124 153 110 154 120 155 136 156 124 157 142 158 94 159 109 160 121 161 104 162 99 163 99 164 99 165 97 166 104 167 102 168 99 169 104 170 100 171 91 172 78 173 87 174 84 175 104 176 95 177 86 178 88 179 74 180 95 181 73 182 80 183 55 184 69 185 91 186 58 187 62 188 62 189 70 190 89 191 72 192 75 193 49 194 51 195 69 196 67 197 71 198 56 199 76 200 59 201 69 202 61 203 73 204 58 205 61 206 61 207 67 208 54 209 52 210 31 211 51 212 55 213 44 214 45 215 41 216 45 217 49 218 60 219 56 220 46 221 48 222 55 223 43 224 39 225 39 226 35 227 43 228 44 229 42 230 44 231 36 232 44 233 41 234 40 235 40 236 30 237 39 238 35 239 34 240 55 241 39 242 36 243 27 244 40 245 39 246 39 247 34 248 27 249 32 250 40 251 39 252 31 253 28 254 35 255 22 256 23 257 28 258 37 259 32 260 31 261 25 262 28 263 30 264 29 265 31 266 28 267 36 268 26 269 23 270 29 271 23 272 24 273 35 274 23 275 24 276 24 277 26 278 22 279 12 280 23 281 33 282 20 283 27 284 24 285 21 286 19 287 27 288 17 289 20 290 31 291 21 292 29 293 26 294 23 295 21 296 18 297 15 298 18 299 22 300 17 301 21 302 20 303 15 304 13 305 17 306 18 307 22 308 20 309 22 310 20 311 19 312 18 313 17 314 21 315 15 316 14 317 16 318 17 319 20 320 15 321 10 322 18 323 11 324 14 325 17 326 12 327 16 328 17 329 9 330 12 331 11 332 18 333 14 334 9 335 10 336 10 337 17 338 20 339 9 340 9 341 11 342 14 343 17 344 17 345 13 346 16 347 10 348 16 349 12 350 8 351 14 352 9 353 10 354 16 355 7 356 19 357 21 358 14 359 9 360 12 361 15 362 6 363 9 364 13 365 14 366 5 367 10 368 6 369 8 370 4 371 19 372 9 373 12 374 5 375 8 376 10 377 8 378 8 379 8 380 8 381 8 382 7 383 5 384 15 385 3 386 9 387 16 388 5 389 8 390 6 391 7 392 5 393 7 394 10 395 8 396 8 397 11 398 10 399 15 400 9 401 8 402 7 403 3 404 14 405 7 406 5 407 3 408 10 409 10 410 7 411 4 412 5 413 3 414 10 415 5 416 10 417 7 418 8 419 10 420 7 421 10 422 3 423 12 424 10 425 11 426 8 427 10 428 9 429 8 430 8 431 8 432 5 433 12 434 9 435 9 436 7 437 9 438 4 439 6 440 3 441 6 442 9 443 7 444 6 445 2 446 5 447 6 448 8 449 7 450 7 451 10 452 11 453 10 454 5 455 4 456 6 457 6 458 9 459 9 460 4 461 10 462 8 463 5 464 5 465 4 466 3 467 6 468 3 469 3 470 8 471 6 472 4 473 8 474 6 475 4 476 2 477 3 478 1 479 5 480 4 481 4 482 3 483 11 484 8 485 5 486 3 487 4 488 5 489 7 490 13 491 6 492 9 493 3 494 3 495 6 496 5 497 4 498 4 499 7 500 4 501 2 502 10 503 3 504 7 505 6 506 1 507 3 508 5 509 8 510 9 511 1 512 9 513 10 514 4 515 4 516 2 517 8 518 3 519 4 520 5 521 1 522 4 523 7 524 3 525 3 526 5 527 3 528 6 529 6 530 5 531 4 532 4 533 3 534 3 535 4 536 4 537 3 538 4 539 6 542 3 543 1 544 6 545 2 546 1 547 4 548 2 549 4 550 4 551 4 552 5 553 1 555 1 556 4 557 2 558 2 559 1 560 4 561 4 562 2 563 2 564 3 565 4 566 6 567 3 568 4 569 2 571 3 572 7 573 5 574 1 575 5 576 5 577 1 578 2 579 1 580 4 581 6 582 5 583 3 584 3 585 2 586 1 587 3 588 2 589 2 590 4 591 4 592 3 593 3 594 3 595 3 596 2 597 1 598 1 599 1 600 3 601 1 602 5 603 5 604 4 605 3 606 3 607 2 608 4 609 1 610 1 612 2 614 2 615 1 616 3 617 9 618 3 619 1 620 3 621 3 622 2 623 1 624 2 625 2 626 3 627 1 629 2 630 4 631 4 632 3 633 3 634 1 635 2 636 3 638 2 639 2 640 5 641 1 642 2 643 3 644 1 645 3 646 3 647 1 648 3 649 4 650 3 651 2 652 1 653 3 654 1 655 7 656 3 658 4 660 2 661 4 662 3 663 2 664 2 665 2 667 2 668 1 669 2 670 3 671 1 672 2 673 2 674 2 675 1 677 2 678 4 679 2 680 3 681 2 682 2 683 5 684 3 685 3 686 2 687 2 688 1 689 5 690 2 692 2 693 1 694 1 695 1 696 4 697 1 698 1 699 2 700 1 701 1 703 2 704 1 706 1 707 2 708 2 709 2 710 1 711 1 714 2 716 2 717 1 718 3 719 2 720 4 721 1 722 1 723 1 724 2 725 2 726 2 727 3 728 1 729 1 730 1 731 1 733 3 736 2 739 1 740 5 741 2 742 3 743 1 744 1 746 3 751 2 752 1 753 2 755 2 756 1 757 2 758 1 759 1 761 1 762 2 766 1 768 1 769 1 770 3 771 2 772 2 774 2 775 3 776 2 777 1 778 1 780 1 781 1 783 1 784 1 785 1 788 1 789 2 791 1 793 1 794 3 795 1 797 2 799 1 802 1 803 3 804 1 805 3 807 1 810 1 811 1 813 2 815 1 816 1 817 2 818 1 821 1 822 2 823 1 824 3 826 3 828 1 829 1 830 1 832 2 833 2 834 1 835 1 836 1 837 3 838 1 839 1 840 1 844 1 847 4 848 1 851 1 852 2 853 1 854 2 855 4 859 1 861 1 863 1 864 2 865 2 866 3 868 2 871 3 874 1 876 1 877 1 878 2 884 3 885 1 887 1 888 2 889 1 890 1 891 2 894 1 895 1 896 1 897 1 898 1 899 3 901 1 905 3 906 2 908 1 909 3 910 1 911 1 913 2 915 1 918 1 919 2 920 2 921 1 923 1 924 3 926 1 932 1 934 1 936 1 937 1 938 1 939 2 940 1 941 1 943 1 946 1 947 2 948 1 950 1 951 1 952 1 953 1 956 1 960 1 963 1 964 2 965 2 968 1 969 1 971 1 972 1 973 1 978 1 982 1 986 2 989 1 990 1 995 1 997 1 1005 1 1011 1 1012 2 1015 1 1016 2 1017 3 1019 1 1021 1 1022 2 1028 1 1029 1 1031 1 1036 1 1037 4 1040 1 1044 1 1047 1 1052 1 1058 2 1060 1 1061 2 1063 2 1064 2 1070 2 1072 1 1074 1 1081 1 1083 1 1087 1 1093 1 1101 1 1107 1 1109 1 1117 1 1118 1 1130 1 1133 1 1145 1 1147 1 1151 1 1158 1 1159 2 1165 1 1166 1 1170 1 1171 1 1184 2 1192 2 1193 1 1195 1 1200 1 1204 1 1205 1 1206 1 1207 1 1209 2 1214 1 1221 1 1223 1 1231 1 1236 2 1240 1 1244 1 1246 1 1254 1 1256 1 1257 1 1268 1 1275 1 1277 1 1278 2 1291 1 1297 1 1299 1 1306 1 1319 1 1326 1 1330 1 1331 1 1350 1 1360 1 1365 1 1373 1 1381 1 1382 1 1393 1 1395 1 1406 1 1412 1 1427 1 1428 1 1433 1 1443 1 1450 1 1452 1 1453 1 1468 1 1474 1 1481 1 1483 1 1486 1 1490 1 1492 1 1514 1 1516 1 1554 1 1565 1 1576 1 1596 2 1602 1 1603 1 1606 2 1636 1 1637 1 1639 1 1640 1 1642 1 1674 1 1678 1 1706 1 1723 1 1767 1 1787 1 1803 1 1804 1 1831 1 1849 1 1853 1 1854 1 1939 1 1982 1 2036 1 2060 1 2133 1 2147 1 2166 1 2178 2 2180 1 2224 1 2243 1 2261 1 2264 1 2327 1 2425 1 2490 1 2492 1 2493 1 2519 1 2534 1 2588 1 2609 1 2795 1 2898 1 2926 1 3126 1 3595 1 3907 1 4222 1 4348 1 4404 1 6429 1 10958 1 23078 1 446337 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] _....__........__._..___...__....._..._....._....._...._._...__........_ _......____......_.._.._..._..._..........._..........._.... [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]