File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/c81b9ef65fb148a171f44658d03d72/.command.log
Size
7.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-b6a2e8-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/8355028d2e9e164fe92db195ae8958/aih-tih-sc-b6a2e8-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/c81b9ef65fb148a171f44658d03d72/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/c81b9ef65fb148a171f44658d03d72/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/10302c83425aca04534c623e731490/aih-tih-sc-b6a2e8-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
GSG1L--AJ003147.2
starfusion
arriba
ABAT--GSG1L
starfusion
arriba
CCDC189--MROH1
starfusion
arriba
ZC3HAV1--CNTNAP2
starfusion
arriba
XRN2--GRM7
starfusion
arriba
LRMDA--ADK
starfusion
arriba
CUL1--RBMS3
starfusion
arriba
EZH1--TBC1D16
starfusion
TCF4--HNRNPA1P57
starfusion
TLK2P1--AC110079.1
starfusion
N4BP2L2--LITAFD
starfusion
SUCLG2-AS1--PTPRG
starfusion
arriba
GBE1--FOXP1
starfusion
arriba
TLK2--AC240565.1
starfusion
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
CCDC169--SOHLH2
arriba
SUCLG2--CNTN3
arriba
SUCLG2--NIPA2P2
arriba
CMTM8--RN7SL120P
arriba
CMTM8--CNTN6
arriba
AKAP10--KCNU1
arriba
AKAP10--AC090453.1
arriba
ZNF267--SPECC1
arriba
PCDHA3--PCDHAC1
arriba
PCDHA3--PCDHAC2
arriba
PCDHA3--PCDHA13
arriba
HSD17B7P2--RAD18
arriba
TDRD1--HECTD2
arriba
TDRD1--RPS27P1
arriba
IKZF2--LINC01953
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
AP3M2--NRG1
arriba

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Processing GSG1L--AJ003147.2:   0%|          | 0/35 [00:00<?, ?it/s]
Processing GSG1L--AJ003147.2:   3%|▎         | 1/35 [00:00<00:03,  9.23it/s]
Processing ABAT--GSG1L:   3%|▎         | 1/35 [00:00<00:03,  9.23it/s]      
Processing ABAT--GSG1L:   6%|▌         | 2/35 [00:00<00:03,  9.45it/s]
Processing CCDC189--MROH1:   6%|▌         | 2/35 [00:00<00:03,  9.45it/s]
Processing CCDC189--MROH1:   9%|▊         | 3/35 [00:00<00:03,  9.53it/s]
Processing ZC3HAV1--CNTNAP2:   9%|▊         | 3/35 [00:00<00:03,  9.53it/s]
Processing ZC3HAV1--CNTNAP2:  11%|█▏        | 4/35 [00:00<00:03,  9.55it/s]
Processing XRN2--GRM7:  11%|█▏        | 4/35 [00:00<00:03,  9.55it/s]      
Processing XRN2--GRM7:  14%|█▍        | 5/35 [00:00<00:03,  9.56it/s]
Processing LRMDA--ADK:  14%|█▍        | 5/35 [00:00<00:03,  9.56it/s]
Processing LRMDA--ADK:  17%|█▋        | 6/35 [00:00<00:03,  9.57it/s]
Processing CUL1--RBMS3:  17%|█▋        | 6/35 [00:00<00:03,  9.57it/s]
Processing CUL1--RBMS3:  20%|██        | 7/35 [00:00<00:02,  9.57it/s]
Processing EZH1--TBC1D16:  20%|██        | 7/35 [00:00<00:02,  9.57it/s]
Processing EZH1--TBC1D16:  23%|██▎       | 8/35 [00:00<00:02,  9.58it/s]
Processing TCF4--HNRNPA1P57:  23%|██▎       | 8/35 [00:00<00:02,  9.58it/s]
Processing TCF4--HNRNPA1P57:  26%|██▌       | 9/35 [00:00<00:02,  9.58it/s]
Processing TLK2P1--AC110079.1:  26%|██▌       | 9/35 [00:00<00:02,  9.58it/s]
Processing TLK2P1--AC110079.1:  29%|██▊       | 10/35 [00:01<00:02,  9.59it/s]
Processing N4BP2L2--LITAFD:  29%|██▊       | 10/35 [00:01<00:02,  9.59it/s]   
Processing N4BP2L2--LITAFD:  31%|███▏      | 11/35 [00:01<00:02,  9.59it/s]
Processing SUCLG2-AS1--PTPRG:  31%|███▏      | 11/35 [00:01<00:02,  9.59it/s]
Processing SUCLG2-AS1--PTPRG:  34%|███▍      | 12/35 [00:01<00:02,  9.58it/s]
Processing GBE1--FOXP1:  34%|███▍      | 12/35 [00:01<00:02,  9.58it/s]      
Processing GBE1--FOXP1:  37%|███▋      | 13/35 [00:01<00:02,  9.58it/s]
Processing TLK2--AC240565.1:  37%|███▋      | 13/35 [00:01<00:02,  9.58it/s]
Processing TLK2--AC240565.1:  40%|████      | 14/35 [00:01<00:02,  9.58it/s]
Processing STX16--NPEPL1:  40%|████      | 14/35 [00:01<00:02,  9.58it/s]   
Processing STX16--NPEPL1:  43%|████▎     | 15/35 [00:01<00:02,  9.58it/s]
Processing TVP23C--CDRT4:  43%|████▎     | 15/35 [00:01<00:02,  9.58it/s]
Processing TVP23C--CDRT4:  46%|████▌     | 16/35 [00:01<00:01,  9.58it/s]
Processing CCDC169--SOHLH2:  46%|████▌     | 16/35 [00:01<00:01,  9.58it/s]
Processing CCDC169--SOHLH2:  49%|████▊     | 17/35 [00:01<00:01,  9.58it/s]
Processing SUCLG2--CNTN3:  49%|████▊     | 17/35 [00:01<00:01,  9.58it/s]  
Processing SUCLG2--CNTN3:  51%|█████▏    | 18/35 [00:01<00:01,  9.58it/s]
Processing SUCLG2--NIPA2P2:  51%|█████▏    | 18/35 [00:01<00:01,  9.58it/s]
Processing SUCLG2--NIPA2P2:  54%|█████▍    | 19/35 [00:01<00:01,  9.58it/s]
Processing CMTM8--RN7SL120P:  54%|█████▍    | 19/35 [00:01<00:01,  9.58it/s]
Processing CMTM8--RN7SL120P:  57%|█████▋    | 20/35 [00:02<00:01,  9.58it/s]
Processing CMTM8--CNTN6:  57%|█████▋    | 20/35 [00:02<00:01,  9.58it/s]    
Processing CMTM8--CNTN6:  60%|██████    | 21/35 [00:02<00:01,  9.58it/s]
Processing AKAP10--KCNU1:  60%|██████    | 21/35 [00:02<00:01,  9.58it/s]
Processing AKAP10--KCNU1:  63%|██████▎   | 22/35 [00:02<00:01,  9.58it/s]
Processing AKAP10--AC090453.1:  63%|██████▎   | 22/35 [00:02<00:01,  9.58it/s]
Processing AKAP10--AC090453.1:  66%|██████▌   | 23/35 [00:02<00:01,  9.59it/s]
Processing ZNF267--SPECC1:  66%|██████▌   | 23/35 [00:02<00:01,  9.59it/s]    
Processing ZNF267--SPECC1:  69%|██████▊   | 24/35 [00:02<00:01,  9.60it/s]
Processing PCDHA3--PCDHAC1:  69%|██████▊   | 24/35 [00:02<00:01,  9.60it/s]
Processing PCDHA3--PCDHAC1:  71%|███████▏  | 25/35 [00:02<00:01,  9.61it/s]
Processing PCDHA3--PCDHAC2:  71%|███████▏  | 25/35 [00:02<00:01,  9.61it/s]
Processing PCDHA3--PCDHAC2:  74%|███████▍  | 26/35 [00:02<00:00,  9.62it/s]
Processing PCDHA3--PCDHA13:  74%|███████▍  | 26/35 [00:02<00:00,  9.62it/s]
Processing PCDHA3--PCDHA13:  77%|███████▋  | 27/35 [00:02<00:00,  9.63it/s]
Processing HSD17B7P2--RAD18:  77%|███████▋  | 27/35 [00:02<00:00,  9.63it/s]
Processing HSD17B7P2--RAD18:  80%|████████  | 28/35 [00:02<00:00,  9.63it/s]
Processing TDRD1--HECTD2:  80%|████████  | 28/35 [00:02<00:00,  9.63it/s]   
Processing TDRD1--HECTD2:  83%|████████▎ | 29/35 [00:03<00:00,  9.63it/s]
Processing TDRD1--RPS27P1:  83%|████████▎ | 29/35 [00:03<00:00,  9.63it/s]
Processing TDRD1--RPS27P1:  86%|████████▌ | 30/35 [00:03<00:00,  9.63it/s]
Processing IKZF2--LINC01953:  86%|████████▌ | 30/35 [00:03<00:00,  9.63it/s]
Processing IKZF2--LINC01953:  89%|████████▊ | 31/35 [00:03<00:00,  9.63it/s]
Processing PCDHA11--PCDHAC1:  89%|████████▊ | 31/35 [00:03<00:00,  9.63it/s]
Processing PCDHA11--PCDHAC1:  91%|█████████▏| 32/35 [00:03<00:00,  9.63it/s]
Processing PCDHA11--PCDHAC2:  91%|█████████▏| 32/35 [00:03<00:00,  9.63it/s]
Processing PCDHA11--PCDHAC2:  94%|█████████▍| 33/35 [00:03<00:00,  9.63it/s]
Processing PCDHA11--PCDHA13:  94%|█████████▍| 33/35 [00:03<00:00,  9.63it/s]
Processing PCDHA11--PCDHA13:  97%|█████████▋| 34/35 [00:03<00:00,  9.63it/s]
Processing AP3M2--NRG1:  97%|█████████▋| 34/35 [00:03<00:00,  9.63it/s]     
Processing AP3M2--NRG1: 100%|██████████| 35/35 [00:03<00:00,  9.63it/s]
Processing AP3M2--NRG1: 100%|██████████| 35/35 [00:03<00:00,  9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory